Wall clock time and date at job start Mon Mar 30 2020 05:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50693 * 109.47399 * 2 1 4 4 C 1.38656 * 119.90793 * 89.99606 * 3 2 1 5 5 C 1.37437 * 120.25368 * 180.02562 * 4 3 2 6 6 C 1.40607 * 120.31077 * 359.97438 * 5 4 3 7 7 C 1.39358 * 119.24960 * 0.02602 * 6 5 4 8 8 C 1.37649 * 119.90279 * 270.01953 * 3 2 1 9 9 S 1.75787 * 110.24720 * 180.02562 * 7 6 5 10 10 C 1.69979 * 93.26167 * 359.96195 * 9 7 6 11 11 F 1.35101 * 124.04873 * 180.02562 * 10 9 7 12 12 C 1.36886 * 111.90180 * 0.02562 * 10 9 7 13 13 C 1.40756 * 123.33207 * 179.97438 * 12 10 9 14 14 H 1.07996 * 119.99773 * 140.47885 * 13 12 10 15 15 C 1.39637 * 120.00085 * 320.46743 * 13 12 10 16 16 N 1.31167 * 119.99661 * 158.92346 * 15 13 12 17 17 Si 1.86795 * 120.00132 * 338.93218 * 15 13 12 18 18 H 1.48503 * 109.47241 * 95.59450 * 17 15 13 19 19 H 1.48508 * 109.47086 * 215.59258 * 17 15 13 20 20 H 1.48496 * 109.47595 * 335.59316 * 17 15 13 21 21 H 1.09005 * 109.47308 * 300.00562 * 1 2 3 22 22 H 1.09001 * 109.46929 * 60.00248 * 1 2 3 23 23 H 1.09000 * 109.47568 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47483 * 239.99320 * 2 1 3 25 25 H 1.09001 * 109.46929 * 119.99752 * 2 1 3 26 26 H 1.07997 * 119.86977 * 0.02562 * 4 3 2 27 27 H 1.07992 * 119.83899 * 179.69995 * 5 4 3 28 28 H 1.08006 * 119.80617 * 0.02562 * 8 3 2 29 29 H 0.97004 * 119.99711 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2628 2.0725 1.2019 5 6 2.7204 3.3684 1.2102 6 6 2.9595 4.0444 0.0006 7 6 2.7266 3.3855 -1.2051 8 6 2.2607 2.0678 -1.1932 9 16 3.1014 4.4430 -2.5584 10 6 3.5567 5.7332 -1.5498 11 9 3.9808 6.9336 -2.0020 12 6 3.4422 5.4103 -0.2245 13 6 3.7570 6.3013 0.8187 14 1 3.1383 6.3374 1.7031 15 6 4.8695 7.1382 0.7102 16 7 4.9454 8.2260 1.4392 17 14 6.2494 6.7089 -0.4734 18 1 6.0427 7.4276 -1.7564 19 1 7.5511 7.1133 0.1162 20 1 6.2517 5.2447 -0.7210 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.0819 1.5599 2.1351 27 1 2.8930 3.8714 2.1502 28 1 2.0784 1.5545 -2.1258 29 1 5.7181 8.8076 1.3636 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396322534.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:13 Heat of formation + Delta-G solvation = -36.341063 kcal Electronic energy + Delta-G solvation = -15548.165880 eV Core-core repulsion = 12861.620814 eV Total energy + Delta-G solvation = -2686.545066 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.49113 -40.49032 -37.12665 -35.16750 -33.30640 -31.82784 -29.43550 -27.77309 -24.78900 -23.59815 -22.45375 -21.31913 -19.46269 -19.01249 -17.29269 -16.96734 -16.77945 -16.29058 -15.96104 -15.16264 -15.07820 -14.85260 -14.61331 -14.23343 -14.04137 -13.65386 -13.45694 -13.21757 -12.73461 -12.56655 -12.20149 -11.91880 -11.77722 -11.60701 -11.37938 -11.24557 -11.14491 -10.29935 -9.12043 -9.03142 -8.65687 -6.59445 -0.10505 0.37965 0.66866 1.04608 1.21375 1.26463 1.32793 1.51174 2.06777 2.61807 2.99381 3.71239 3.93753 4.01684 4.30015 4.43255 4.56461 4.62602 4.67497 4.81420 4.92446 5.03627 5.17127 5.19641 5.22291 5.27317 5.47901 5.51009 5.61473 5.71023 6.03813 6.07751 6.33993 6.61757 8.03363 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.032729 B = 0.007767 C = 0.006817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.297839 B = 3604.262141 C = 4106.442386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 C -0.063 4.063 4 C -0.118 4.118 5 C -0.080 4.080 6 C -0.097 4.097 7 C -0.134 4.134 8 C -0.094 4.094 9 S 0.093 5.907 10 C -0.265 4.265 11 F -0.134 7.134 12 C 0.047 3.953 13 C -0.458 4.458 14 H 0.075 0.925 15 C 0.062 3.938 16 N -0.835 5.835 17 Si 0.953 3.047 18 H -0.266 1.266 19 H -0.270 1.270 20 H -0.262 1.262 21 H 0.052 0.948 22 H 0.048 0.952 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.157 0.843 27 H 0.121 0.879 28 H 0.147 0.853 29 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.636 -15.812 -2.502 16.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.066 4.066 4 C -0.139 4.139 5 C -0.099 4.099 6 C -0.106 4.106 7 C -0.250 4.250 8 C -0.117 4.117 9 S 0.352 5.648 10 C -0.397 4.397 11 F -0.114 7.114 12 C 0.035 3.965 13 C -0.489 4.489 14 H 0.093 0.907 15 C -0.155 4.155 16 N -0.461 5.461 17 Si 0.777 3.223 18 H -0.192 1.192 19 H -0.196 1.196 20 H -0.186 1.186 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.095 0.905 24 H 0.103 0.897 25 H 0.108 0.892 26 H 0.175 0.825 27 H 0.139 0.861 28 H 0.164 0.836 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.530 -15.541 -3.952 16.663 hybrid contribution 0.933 1.556 1.168 2.158 sum -3.597 -13.986 -2.784 14.707 Atomic orbital electron populations 1.21754 0.94085 1.02601 1.01877 1.20585 0.96504 0.89838 1.04384 1.20117 0.97365 0.97564 0.91577 1.21135 1.00162 0.93310 0.99289 1.21059 0.97814 0.95228 0.95831 1.19321 1.03680 0.92898 0.94660 1.22655 1.07137 0.99469 0.95700 1.20584 1.00920 0.90483 0.99729 1.81591 1.73023 1.03200 1.06985 1.20952 1.33905 0.88874 0.96013 1.91106 1.89017 1.42700 1.88598 1.18007 0.94883 0.92204 0.91435 1.18750 1.10910 1.15819 1.03452 0.90698 1.26553 1.00938 0.92087 0.95901 1.69846 1.30257 1.08980 1.37018 0.85764 0.76975 0.80548 0.79041 1.19193 1.19611 1.18629 0.92927 0.93262 0.90493 0.89682 0.89161 0.82534 0.86099 0.83571 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.89 71.98 0.71 -1.52 15 2 C -0.08 -1.27 6.06 29.85 0.18 -1.09 15 3 C -0.06 -1.64 5.13 -19.91 -0.10 -1.74 15 4 C -0.12 -3.36 9.67 22.18 0.21 -3.15 15 5 C -0.08 -3.03 9.86 22.66 0.22 -2.80 15 6 C -0.10 -4.44 6.02 -20.25 -0.12 -4.56 15 7 C -0.13 -5.38 6.44 22.91 0.15 -5.24 15 8 C -0.09 -2.85 9.71 22.50 0.22 -2.63 15 9 S 0.09 3.93 22.96 -56.49 -1.30 2.63 15 10 C -0.26 -13.93 6.37 67.50 0.43 -13.50 15 11 F -0.13 -7.49 13.14 44.97 0.59 -6.90 15 12 C 0.05 2.49 4.86 -20.80 -0.10 2.39 15 13 C -0.46 -26.44 9.46 23.22 0.22 -26.22 15 14 H 0.08 4.49 8.06 -2.91 -0.02 4.47 15 15 C 0.06 3.52 5.16 85.13 0.44 3.96 15 16 N -0.83 -47.52 13.95 21.79 0.30 -47.22 15 17 Si 0.95 47.53 24.71 68.60 1.70 49.23 15 18 H -0.27 -13.56 6.19 99.48 0.62 -12.94 15 19 H -0.27 -12.24 7.11 99.48 0.71 -11.54 15 20 H -0.26 -13.31 7.11 99.48 0.71 -12.60 15 21 H 0.05 0.85 8.14 -2.38 -0.02 0.84 15 22 H 0.05 0.83 8.14 -2.39 -0.02 0.81 15 23 H 0.08 0.86 8.14 -2.39 -0.02 0.84 15 24 H 0.08 1.22 8.08 -2.39 -0.02 1.20 15 25 H 0.09 1.22 8.08 -2.39 -0.02 1.21 15 26 H 0.16 3.26 8.06 -2.91 -0.02 3.23 15 27 H 0.12 4.59 8.06 -2.91 -0.02 4.57 15 28 H 0.15 3.55 8.06 -2.91 -0.02 3.53 15 29 H 0.29 15.18 8.30 -92.71 -0.77 14.41 15 Total: -1.00 -65.17 264.91 4.82 -60.34 By element: Atomic # 1 Polarization: -3.05 SS G_CDS: 1.07 Total: -1.98 kcal Atomic # 6 Polarization: -58.56 SS G_CDS: 2.46 Total: -56.10 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.30 Total: -47.22 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 0.59 Total: -6.90 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 1.70 Total: 49.23 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -1.30 Total: 2.63 kcal Total: -65.17 4.82 -60.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396322534.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.002 kcal (2) G-P(sol) polarization free energy of solvation -65.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds