Wall clock time and date at job start Mon Mar 30 2020 05:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47252 * 2 1 4 4 C 1.38923 * 119.89349 * 89.99676 * 3 2 1 5 5 C 1.35965 * 120.63495 * 180.02562 * 4 3 2 6 6 C 1.41852 * 120.48250 * 359.97438 * 5 4 3 7 7 C 1.40077 * 128.50128 * 179.97438 * 6 5 4 8 8 F 1.35101 * 122.54826 * 0.04155 * 7 6 5 9 9 C 1.37256 * 114.90114 * 180.02562 * 7 6 5 10 10 C 1.39791 * 124.83427 * 179.97438 * 9 7 6 11 11 H 1.08001 * 119.99718 * 359.97438 * 10 9 7 12 12 C 1.40112 * 119.99808 * 180.02562 * 10 9 7 13 13 N 1.30830 * 120.00528 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99891 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47641 * 89.99596 * 14 12 10 16 16 H 1.48509 * 109.46998 * 209.99598 * 14 12 10 17 17 H 1.48499 * 109.47205 * 329.99287 * 14 12 10 18 18 S 1.75445 * 110.32994 * 0.02562 * 9 7 6 19 19 C 1.40240 * 118.61144 * 0.04370 * 6 5 4 20 20 C 1.37692 * 119.89395 * 270.02418 * 3 2 1 21 21 H 1.09009 * 109.46964 * 60.00205 * 1 2 3 22 22 H 1.09002 * 109.47665 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47363 * 300.00242 * 1 2 3 24 24 H 1.09006 * 109.46970 * 239.99578 * 2 1 3 25 25 H 1.08996 * 109.46681 * 119.99920 * 2 1 3 26 26 H 1.07998 * 119.68614 * 0.02562 * 4 3 2 27 27 H 1.07993 * 119.75969 * 179.70484 * 5 4 3 28 28 H 0.96995 * 120.00315 * 179.97438 * 13 12 10 29 29 H 1.08001 * 119.84971 * 359.97438 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2631 2.0735 1.2044 5 6 2.7158 3.3555 1.2220 6 6 2.9610 4.0487 0.0089 7 6 3.4233 5.3591 -0.1685 8 9 3.7113 6.1750 0.8691 9 6 3.5616 5.7509 -1.4766 10 6 4.0054 7.0103 -1.8903 11 1 4.2682 7.7580 -1.1566 12 6 4.1082 7.3029 -3.2566 13 7 3.7893 6.3974 -4.1454 14 14 4.7005 8.9861 -3.8093 15 1 6.1781 8.9674 -3.9559 16 1 4.0779 9.3261 -5.1141 17 1 4.3163 10.0029 -2.7976 18 16 3.1007 4.4466 -2.5557 19 6 2.7258 3.3845 -1.2035 20 6 2.2606 2.0679 -1.1937 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5138 0.8900 26 1 2.0811 1.5578 2.1357 27 1 2.8858 3.8510 2.1663 28 1 3.8602 6.6001 -5.0913 29 1 2.0792 1.5548 -2.1266 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396322560.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:18 Heat of formation + Delta-G solvation = -47.382455 kcal Electronic energy + Delta-G solvation = -15290.818139 eV Core-core repulsion = 12603.794282 eV Total energy + Delta-G solvation = -2687.023857 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.87014 -38.38807 -35.14715 -34.06931 -31.68901 -29.77571 -28.66581 -25.50899 -23.11628 -21.91252 -20.76448 -19.22805 -17.99285 -16.11260 -15.91186 -15.11591 -14.51979 -14.35184 -13.98471 -13.69703 -13.04154 -12.96432 -12.80467 -12.49983 -12.22210 -12.04927 -11.78048 -11.46027 -11.26586 -10.95627 -10.74763 -10.47679 -10.29439 -10.18385 -9.87553 -9.26180 -9.24017 -8.41246 -7.48422 -7.29719 -6.41386 -4.71589 1.91925 2.35491 2.74667 2.80436 2.87747 3.09535 3.37529 3.49018 3.68934 4.50231 4.87912 5.36087 5.39127 5.75259 5.78540 5.82267 6.02829 6.10897 6.16893 6.25227 6.41771 6.50250 6.56226 6.82441 6.89036 7.03196 7.12908 7.37327 7.49252 7.65399 7.76605 7.96998 8.20487 8.31945 9.53321 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.039257 B = 0.006470 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.068737 B = 4326.655307 C = 4942.152811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.067 4.067 3 C -0.156 4.156 4 C -0.102 4.102 5 C -0.140 4.140 6 C -0.007 4.007 7 C -0.172 4.172 8 F -0.160 7.160 9 C 0.019 3.981 10 C -0.368 4.368 11 H 0.103 0.897 12 C 0.052 3.948 13 N -0.772 5.772 14 Si 0.942 3.058 15 H -0.261 1.261 16 H -0.269 1.269 17 H -0.255 1.255 18 S 0.175 5.825 19 C -0.255 4.255 20 C -0.048 4.048 21 H 0.053 0.947 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.304 0.696 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.020 -4.418 -0.023 4.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 C -0.158 4.158 4 C -0.122 4.122 5 C -0.160 4.160 6 C -0.015 4.015 7 C -0.197 4.197 8 F -0.140 7.140 9 C -0.102 4.102 10 C -0.402 4.402 11 H 0.121 0.879 12 C -0.170 4.170 13 N -0.398 5.398 14 Si 0.765 3.235 15 H -0.186 1.186 16 H -0.194 1.194 17 H -0.178 1.178 18 S 0.435 5.565 19 C -0.370 4.370 20 C -0.070 4.070 21 H 0.072 0.928 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.121 0.879 27 H 0.122 0.878 28 H 0.117 0.883 29 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.074 -4.551 -1.780 5.309 hybrid contribution 0.355 1.019 1.518 1.863 sum -1.719 -3.532 -0.262 3.937 Atomic orbital electron populations 1.21766 0.95918 1.00448 1.02068 1.20283 0.95238 0.93594 1.01382 1.19250 1.07609 0.96007 0.92981 1.20119 1.01020 0.94634 0.96436 1.20462 1.04622 0.94968 0.95975 1.17759 0.97959 0.92451 0.93343 1.16098 1.29785 0.90573 0.83242 1.91186 1.93708 1.72281 1.56803 1.21380 0.97408 0.97794 0.93572 1.19289 1.31478 0.96778 0.92633 0.87928 1.26345 0.93384 1.01060 0.96168 1.68617 1.32249 1.34527 1.04410 0.85685 0.79766 0.79155 0.78924 1.18605 1.19394 1.17832 1.84759 1.68756 1.00876 1.02157 1.23353 1.13372 0.99961 1.00309 1.20011 0.98463 0.92061 0.96464 0.92776 0.93422 0.92879 0.92154 0.92191 0.87868 0.87805 0.88267 0.87749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.89 37.16 0.37 -1.53 15 2 C -0.07 -0.99 6.06 -27.89 -0.17 -1.15 15 3 C -0.16 -2.94 5.14 -104.57 -0.54 -3.48 15 4 C -0.10 -1.98 9.60 -40.14 -0.39 -2.37 15 5 C -0.14 -3.14 10.02 -39.02 -0.39 -3.53 15 6 C -0.01 -0.17 5.86 -107.07 -0.63 -0.80 15 7 C -0.17 -4.65 7.46 -39.25 -0.29 -4.94 15 8 F -0.16 -4.31 17.07 2.25 0.04 -4.28 15 9 C 0.02 0.50 6.12 -39.36 -0.24 0.26 15 10 C -0.37 -9.32 9.14 -38.30 -0.35 -9.67 15 11 H 0.10 2.54 7.80 -52.49 -0.41 2.13 15 12 C 0.05 1.18 5.50 -17.28 -0.09 1.09 15 13 N -0.77 -17.61 10.58 55.56 0.59 -17.02 15 14 Si 0.94 16.85 29.56 -169.99 -5.03 11.82 15 15 H -0.26 -4.61 7.11 56.52 0.40 -4.20 15 16 H -0.27 -4.62 7.11 56.52 0.40 -4.21 15 17 H -0.25 -4.57 7.11 56.52 0.40 -4.17 15 18 S 0.17 4.23 20.12 -107.50 -2.16 2.07 15 19 C -0.26 -6.11 6.47 -38.31 -0.25 -6.35 15 20 C -0.05 -0.99 9.71 -39.26 -0.38 -1.37 15 21 H 0.05 0.74 8.14 -51.92 -0.42 0.31 15 22 H 0.05 0.52 8.14 -51.93 -0.42 0.09 15 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 15 24 H 0.06 0.82 8.08 -51.93 -0.42 0.40 15 25 H 0.06 0.80 8.08 -51.93 -0.42 0.38 15 26 H 0.10 1.70 8.06 -52.49 -0.42 1.27 15 27 H 0.10 2.19 8.06 -52.49 -0.42 1.77 15 28 H 0.30 6.12 8.30 -40.82 -0.34 5.78 15 29 H 0.10 1.93 8.06 -52.49 -0.42 1.51 15 LS Contribution 270.46 15.07 4.08 4.08 Total: -1.00 -27.06 270.46 -8.75 -35.81 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -2.92 Total: 1.35 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: -3.35 Total: -33.84 kcal Atomic # 7 Polarization: -17.61 SS G_CDS: 0.59 Total: -17.02 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.04 Total: -4.28 kcal Atomic # 14 Polarization: 16.85 SS G_CDS: -5.03 Total: 11.82 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -2.16 Total: 2.07 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.06 -8.75 -35.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396322560.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.569 kcal (2) G-P(sol) polarization free energy of solvation -27.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds