Wall clock time and date at job start Mon Mar 30 2020 05:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47482 * 2 1 4 4 C 1.35174 * 119.78952 * 264.99970 * 3 2 1 5 5 C 1.42083 * 120.93662 * 179.97438 * 4 3 2 6 6 C 1.40473 * 128.59288 * 180.02562 * 5 4 3 7 7 C 1.32516 * 115.87338 * 179.97438 * 6 5 4 8 8 S 1.75472 * 110.81585 * 0.02562 * 7 6 5 9 9 C 1.40189 * 119.03379 * 0.02562 * 5 4 3 10 10 C 1.39161 * 120.15509 * 0.02562 * 9 5 4 11 11 F 1.35097 * 120.03942 * 180.02562 * 10 9 5 12 12 C 1.40650 * 119.91087 * 359.72237 * 10 9 5 13 13 C 1.40930 * 120.22861 * 180.28949 * 12 10 9 14 14 H 1.08001 * 120.00133 * 217.28867 * 13 12 10 15 15 C 1.39844 * 119.99739 * 37.29473 * 13 12 10 16 16 N 1.30932 * 120.00197 * 19.31872 * 15 13 12 17 17 Si 1.86800 * 120.00054 * 199.31620 * 15 13 12 18 18 H 1.48500 * 109.46871 * 89.99915 * 17 15 13 19 19 H 1.48500 * 109.47225 * 210.00024 * 17 15 13 20 20 H 1.48500 * 109.47180 * 330.00035 * 17 15 13 21 21 H 1.09004 * 109.47058 * 59.99794 * 1 2 3 22 22 H 1.08998 * 109.47545 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46863 * 300.00570 * 1 2 3 24 24 H 1.09004 * 109.47058 * 120.00206 * 2 1 3 25 25 H 1.09007 * 109.46964 * 240.00164 * 2 1 3 26 26 H 1.07999 * 119.52996 * 359.97438 * 4 3 2 27 27 H 1.08000 * 122.06184 * 359.97438 * 6 5 4 28 28 H 1.08003 * 124.59235 * 180.02562 * 7 6 5 29 29 H 0.97000 * 120.00140 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3527 2.0198 -1.1686 5 6 2.8281 3.3585 -1.1970 6 6 3.2040 4.1315 -2.3081 7 6 3.6140 5.3635 -2.0434 8 16 3.5661 5.6794 -0.3180 9 6 2.9635 4.0581 0.0102 10 6 2.6355 3.4436 1.2149 11 9 2.7664 4.1202 2.3769 12 6 2.1616 2.1194 1.2206 13 6 1.8217 1.4926 2.4362 14 1 2.0372 0.4444 2.5821 15 6 1.2052 2.2279 3.4535 16 7 0.6056 3.3577 3.1735 17 14 1.2369 1.5981 5.2118 18 1 2.4420 2.1222 5.9035 19 1 0.0179 2.0580 5.9244 20 1 1.2762 0.1137 5.2054 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 2.2457 1.4732 -2.0939 27 1 3.1614 3.7455 -3.3159 28 1 3.9344 6.0765 -2.7886 29 1 0.1777 3.8675 3.8791 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396322917.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:45 Heat of formation + Delta-G solvation = -33.598860 kcal Electronic energy + Delta-G solvation = -15975.749254 eV Core-core repulsion = 13289.323099 eV Total energy + Delta-G solvation = -2686.426156 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.95919 -40.09880 -37.07936 -35.18397 -33.28108 -30.94728 -29.91974 -27.02800 -24.74966 -23.55787 -22.60262 -20.45942 -19.43592 -18.59966 -17.20405 -16.77237 -16.70372 -15.85033 -15.34576 -15.10710 -14.99839 -14.59669 -14.06358 -14.02526 -13.62479 -13.36145 -13.06957 -13.01053 -12.82477 -12.44924 -12.36039 -11.95783 -11.73899 -11.59170 -11.32955 -11.15922 -10.82684 -10.07760 -9.14457 -8.74197 -8.32906 -6.38227 0.11928 0.73428 0.86245 1.31669 1.35623 1.38256 1.49007 1.76123 2.17379 2.70670 3.35652 3.99841 4.05824 4.35192 4.46228 4.51517 4.70247 4.78044 4.90055 5.00450 5.07713 5.10764 5.24366 5.27918 5.39946 5.50425 5.61830 5.66996 5.86421 6.03705 6.15604 6.38285 6.77065 6.83636 8.25791 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.023089 B = 0.009929 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.403671 B = 2819.276805 C = 3825.827846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.058 4.058 3 C -0.139 4.139 4 C -0.071 4.071 5 C -0.181 4.181 6 C -0.089 4.089 7 C -0.234 4.234 8 S 0.007 5.993 9 C -0.147 4.147 10 C -0.007 4.007 11 F -0.158 7.158 12 C 0.079 3.921 13 C -0.467 4.467 14 H 0.099 0.901 15 C 0.035 3.965 16 N -0.807 5.807 17 Si 0.975 3.025 18 H -0.273 1.273 19 H -0.270 1.270 20 H -0.244 1.244 21 H 0.048 0.952 22 H 0.072 0.928 23 H 0.032 0.968 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.141 0.859 27 H 0.166 0.834 28 H 0.191 0.809 29 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.417 -2.984 -6.198 7.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.095 4.095 3 C -0.140 4.140 4 C -0.091 4.091 5 C -0.187 4.187 6 C -0.118 4.118 7 C -0.366 4.366 8 S 0.267 5.733 9 C -0.262 4.262 10 C -0.034 4.034 11 F -0.137 7.137 12 C 0.073 3.927 13 C -0.496 4.496 14 H 0.116 0.884 15 C -0.183 4.183 16 N -0.431 5.431 17 Si 0.796 3.204 18 H -0.198 1.198 19 H -0.195 1.195 20 H -0.167 1.167 21 H 0.067 0.933 22 H 0.091 0.909 23 H 0.051 0.949 24 H 0.081 0.919 25 H 0.101 0.899 26 H 0.159 0.841 27 H 0.183 0.817 28 H 0.208 0.792 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.643 -1.482 -5.281 5.725 hybrid contribution -0.431 -0.579 0.532 0.897 sum 1.212 -2.061 -4.749 5.317 Atomic orbital electron populations 1.21583 0.95178 1.01453 1.00823 1.20265 0.95981 0.91106 1.02137 1.19744 1.04329 0.98512 0.91445 1.20567 0.98238 0.92345 0.97944 1.18199 1.12697 0.96859 0.90955 1.20065 0.99365 0.93219 0.99184 1.25145 1.13159 1.01664 0.96672 1.83789 1.71919 1.12573 1.05001 1.22737 1.08214 0.98272 0.97008 1.17350 1.13227 0.94033 0.78745 1.91246 1.94163 1.80114 1.48157 1.17672 0.90632 0.89633 0.94800 1.19601 1.33919 0.98425 0.97623 0.88363 1.26699 0.92424 0.94078 1.05085 1.69882 1.22932 1.13368 1.36957 0.85286 0.78425 0.80406 0.76318 1.19797 1.19480 1.16723 0.93323 0.90872 0.94924 0.91850 0.89944 0.84118 0.81667 0.79181 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 9.89 71.98 0.71 -3.75 15 2 C -0.06 -2.03 5.56 29.85 0.17 -1.87 15 3 C -0.14 -6.08 5.13 -19.84 -0.10 -6.18 15 4 C -0.07 -2.86 9.59 22.52 0.22 -2.64 15 5 C -0.18 -7.79 5.89 -21.31 -0.13 -7.92 15 6 C -0.09 -3.09 10.13 21.67 0.22 -2.87 15 7 C -0.23 -7.83 11.09 66.68 0.74 -7.09 15 8 S 0.01 0.30 23.29 -56.49 -1.32 -1.02 15 9 C -0.15 -7.28 6.44 22.97 0.15 -7.13 15 10 C -0.01 -0.36 6.71 23.08 0.15 -0.21 15 11 F -0.16 -9.24 14.28 44.97 0.64 -8.60 15 12 C 0.08 4.10 5.38 -21.30 -0.11 3.99 15 13 C -0.47 -23.89 7.90 23.32 0.18 -23.70 15 14 H 0.10 4.67 6.68 -2.91 -0.02 4.65 15 15 C 0.03 1.75 4.51 85.22 0.38 2.14 15 16 N -0.81 -43.83 11.13 21.81 0.24 -43.59 15 17 Si 0.97 38.62 29.60 68.60 2.03 40.65 15 18 H -0.27 -10.99 7.11 99.48 0.71 -10.28 15 19 H -0.27 -10.27 7.11 99.48 0.71 -9.56 15 20 H -0.24 -8.92 7.11 99.48 0.71 -8.21 15 21 H 0.05 1.56 8.14 -2.38 -0.02 1.54 15 22 H 0.07 1.96 8.14 -2.39 -0.02 1.94 15 23 H 0.03 1.29 7.92 -2.39 -0.02 1.27 15 24 H 0.06 2.29 6.60 -2.38 -0.02 2.27 15 25 H 0.08 2.35 8.01 -2.38 -0.02 2.34 15 26 H 0.14 4.48 8.02 -2.91 -0.02 4.45 15 27 H 0.17 4.33 8.06 -2.91 -0.02 4.31 15 28 H 0.19 4.72 8.06 -2.91 -0.02 4.69 15 29 H 0.29 14.45 8.30 -92.71 -0.77 13.68 15 Total: -1.00 -62.06 265.78 5.35 -56.71 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 1.17 Total: 13.09 kcal Atomic # 6 Polarization: -59.82 SS G_CDS: 2.58 Total: -57.23 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.24 Total: -43.59 kcal Atomic # 9 Polarization: -9.24 SS G_CDS: 0.64 Total: -8.60 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -1.32 Total: -1.02 kcal Total: -62.06 5.35 -56.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396322917.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.106 kcal (2) G-P(sol) polarization free energy of solvation -62.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds