Wall clock time and date at job start Mon Mar 30 2020 05:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50694 * 109.47487 * 2 1 4 4 C 1.37462 * 119.81956 * 265.78415 * 3 2 1 5 5 C 1.38611 * 120.28691 * 180.27194 * 4 3 2 6 6 C 1.37862 * 120.15732 * 359.47100 * 5 4 3 7 7 F 1.35107 * 119.83727 * 180.25078 * 6 5 4 8 8 C 1.39984 * 120.32769 * 0.26951 * 6 5 4 9 9 S 1.75784 * 130.19802 * 179.97438 * 8 6 5 10 10 C 1.69980 * 93.23021 * 180.02562 * 9 8 6 11 11 C 1.36444 * 111.94982 * 359.97438 * 10 9 8 12 12 C 1.40805 * 123.30248 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00344 * 149.00572 * 12 11 10 14 14 C 1.39712 * 120.00078 * 329.00982 * 12 11 10 15 15 N 1.31081 * 120.00208 * 167.60682 * 14 12 11 16 16 Si 1.86801 * 120.00108 * 347.60827 * 14 12 11 17 17 H 1.48504 * 109.47008 * 91.42604 * 16 14 12 18 18 H 1.48498 * 109.47348 * 211.42719 * 16 14 12 19 19 H 1.48502 * 109.47087 * 331.42946 * 16 14 12 20 20 C 1.39311 * 119.61230 * 359.97438 * 8 6 5 21 21 H 1.08997 * 109.47358 * 300.00140 * 1 2 3 22 22 H 1.09007 * 109.46976 * 60.00254 * 1 2 3 23 23 H 1.08995 * 109.47024 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47695 * 239.99499 * 2 1 3 25 25 H 1.09007 * 109.46976 * 119.99746 * 2 1 3 26 26 H 1.07996 * 119.85713 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.91960 * 179.73752 * 5 4 3 28 28 H 1.07998 * 124.02579 * 180.02562 * 10 9 8 29 29 H 0.96998 * 119.99882 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3429 2.0359 -1.1894 5 6 2.8112 3.3405 -1.2003 6 6 2.9581 4.0335 -0.0175 7 9 3.4102 5.3066 -0.0361 8 6 2.6415 3.4246 1.2025 9 16 2.7289 4.0544 2.8413 10 6 2.1607 2.6081 3.5302 11 6 1.9027 1.6594 2.5841 12 6 1.4225 0.3719 2.8912 13 1 0.7839 -0.1473 2.1919 14 6 1.7722 -0.2341 4.1005 15 7 1.1434 -1.3130 4.4990 16 14 3.1358 0.4933 5.1498 17 1 2.5541 1.4548 6.1206 18 1 3.8284 -0.5950 5.8855 19 1 4.1090 1.1984 4.2775 20 6 2.1756 2.1118 1.2162 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.2254 1.4992 -2.1191 27 1 3.0574 3.8167 -2.1378 28 1 2.0197 2.4583 4.5904 29 1 1.3864 -1.7338 5.3384 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396323999.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:43 Heat of formation + Delta-G solvation = -23.439806 kcal Electronic energy + Delta-G solvation = -15902.991078 eV Core-core repulsion = 13217.005452 eV Total energy + Delta-G solvation = -2685.985626 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.37559 -39.03975 -35.06191 -33.51886 -32.64604 -29.25507 -28.25154 -25.90231 -23.19563 -22.86433 -20.77406 -19.75213 -17.45643 -16.96526 -15.95706 -15.59303 -15.16521 -14.94971 -14.33010 -13.85379 -13.43265 -13.00410 -12.93966 -12.81125 -12.37018 -11.91724 -11.66416 -11.43783 -11.10103 -10.94247 -10.65618 -10.42075 -10.29342 -9.99071 -9.83263 -9.54927 -9.25218 -8.38755 -7.75058 -6.96308 -6.87240 -4.51682 1.47109 1.66425 2.51741 2.96368 3.15882 3.23492 3.39533 3.48904 3.99483 4.16464 4.76268 5.00079 5.21923 5.31514 5.57410 5.69108 5.84947 6.02009 6.08520 6.19774 6.39377 6.45429 6.57529 6.65680 6.71928 6.86563 6.91284 7.11217 7.27446 7.45356 7.57511 8.22380 8.34799 8.71202 10.03821 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.021695 B = 0.011065 C = 0.007819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.312665 B = 2529.889062 C = 3580.296912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 C -0.035 4.035 4 C -0.123 4.123 5 C -0.145 4.145 6 C 0.102 3.898 7 F -0.147 7.147 8 C -0.167 4.167 9 S 0.077 5.923 10 C -0.439 4.439 11 C 0.086 3.914 12 C -0.430 4.430 13 H 0.114 0.886 14 C 0.086 3.914 15 N -0.812 5.812 16 Si 0.910 3.090 17 H -0.273 1.273 18 H -0.294 1.294 19 H -0.243 1.243 20 C -0.037 4.037 21 H 0.068 0.932 22 H 0.044 0.956 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.105 0.895 26 H 0.126 0.874 27 H 0.129 0.871 28 H 0.141 0.859 29 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.834 3.317 -7.055 8.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.037 4.037 4 C -0.145 4.145 5 C -0.167 4.167 6 C 0.076 3.924 7 F -0.125 7.125 8 C -0.283 4.283 9 S 0.341 5.659 10 C -0.573 4.573 11 C 0.076 3.924 12 C -0.461 4.461 13 H 0.131 0.869 14 C -0.133 4.133 15 N -0.437 5.437 16 Si 0.737 3.263 17 H -0.199 1.199 18 H -0.222 1.222 19 H -0.166 1.166 20 C -0.047 4.047 21 H 0.087 0.913 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.123 0.877 26 H 0.144 0.856 27 H 0.147 0.853 28 H 0.159 0.841 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.184 4.462 -6.135 7.894 hybrid contribution 0.211 -0.879 0.152 0.917 sum 2.394 3.584 -5.983 7.373 Atomic orbital electron populations 1.21727 0.94972 1.01360 1.01890 1.20802 0.96235 0.92488 1.03732 1.19777 0.96887 0.96219 0.90827 1.20495 1.02511 0.94193 0.97348 1.20709 1.04348 0.95785 0.95809 1.16911 1.03353 0.79544 0.92551 1.91429 1.87048 1.36715 1.97345 1.22737 1.08865 0.99352 0.97380 1.81912 1.72784 1.17568 0.93682 1.23870 1.32742 0.98311 1.02424 1.17460 0.93518 0.94331 0.87061 1.19325 1.25778 0.98339 1.02662 0.86857 1.26066 0.96555 0.94003 0.96646 1.69733 1.35791 1.17347 1.20836 0.86248 0.82300 0.77886 0.79838 1.19944 1.22192 1.16571 1.19334 0.99241 0.91381 0.94740 0.91330 0.93738 0.92803 0.92333 0.87670 0.85617 0.85314 0.84142 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.04 37.16 0.34 -2.05 15 2 C -0.10 -1.69 5.34 -27.89 -0.15 -1.84 15 3 C -0.04 -0.68 5.18 -104.01 -0.54 -1.22 15 4 C -0.12 -2.02 9.63 -39.73 -0.38 -2.40 15 5 C -0.15 -2.40 10.00 -39.58 -0.40 -2.80 15 6 C 0.10 1.96 7.32 -39.06 -0.29 1.68 15 7 F -0.15 -2.75 17.26 2.25 0.04 -2.71 15 8 C -0.17 -3.64 6.42 -38.53 -0.25 -3.88 15 9 S 0.08 1.68 22.96 -107.50 -2.47 -0.79 15 10 C -0.44 -10.64 7.94 30.09 0.24 -10.40 15 11 C 0.09 2.10 5.20 -106.18 -0.55 1.55 15 12 C -0.43 -10.82 7.83 -38.06 -0.30 -11.12 15 13 H 0.11 2.81 3.98 -52.49 -0.21 2.60 15 14 C 0.09 2.17 5.49 -17.32 -0.10 2.08 15 15 N -0.81 -20.82 13.94 55.54 0.77 -20.05 15 16 Si 0.91 20.89 24.59 -169.99 -4.18 16.71 15 17 H -0.27 -6.22 6.69 56.52 0.38 -5.84 15 18 H -0.29 -6.54 7.11 56.52 0.40 -6.13 15 19 H -0.24 -5.77 6.73 56.52 0.38 -5.39 15 20 C -0.04 -0.82 5.99 -105.21 -0.63 -1.45 15 21 H 0.07 1.32 6.88 -51.93 -0.36 0.96 15 22 H 0.04 0.66 8.14 -51.93 -0.42 0.24 15 23 H 0.05 0.83 8.14 -51.93 -0.42 0.40 15 24 H 0.06 0.87 8.05 -51.93 -0.42 0.45 15 25 H 0.11 2.13 5.50 -51.93 -0.29 1.85 15 26 H 0.13 1.64 8.06 -52.49 -0.42 1.22 15 27 H 0.13 1.70 8.06 -52.49 -0.42 1.28 15 28 H 0.14 3.45 4.84 -52.49 -0.25 3.20 15 29 H 0.29 6.73 8.30 -40.82 -0.34 6.39 15 LS Contribution 254.62 15.07 3.84 3.84 Total: -1.00 -26.23 254.62 -7.39 -33.63 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -2.39 Total: 1.23 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: -3.00 Total: -31.85 kcal Atomic # 7 Polarization: -20.82 SS G_CDS: 0.77 Total: -20.05 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.18 Total: 16.71 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.47 Total: -0.79 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -26.23 -7.39 -33.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396323999.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.186 kcal (2) G-P(sol) polarization free energy of solvation -26.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds