Wall clock time and date at job start Mon Mar 30 2020 05:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50694 * 109.47487 * 2 1 4 4 C 1.37462 * 119.81956 * 265.78415 * 3 2 1 5 5 C 1.38611 * 120.28691 * 180.27194 * 4 3 2 6 6 C 1.37862 * 120.15732 * 359.47100 * 5 4 3 7 7 F 1.35107 * 119.83727 * 180.25078 * 6 5 4 8 8 C 1.39984 * 120.32769 * 0.26951 * 6 5 4 9 9 S 1.75784 * 130.19802 * 179.97438 * 8 6 5 10 10 C 1.69980 * 93.23021 * 180.02562 * 9 8 6 11 11 C 1.36444 * 111.94982 * 359.97438 * 10 9 8 12 12 C 1.40805 * 123.30248 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00344 * 149.00572 * 12 11 10 14 14 C 1.39712 * 120.00078 * 329.00982 * 12 11 10 15 15 N 1.31081 * 120.00208 * 167.60682 * 14 12 11 16 16 Si 1.86801 * 120.00108 * 347.60827 * 14 12 11 17 17 H 1.48504 * 109.47008 * 91.42604 * 16 14 12 18 18 H 1.48498 * 109.47348 * 211.42719 * 16 14 12 19 19 H 1.48502 * 109.47087 * 331.42946 * 16 14 12 20 20 C 1.39311 * 119.61230 * 359.97438 * 8 6 5 21 21 H 1.08997 * 109.47358 * 300.00140 * 1 2 3 22 22 H 1.09007 * 109.46976 * 60.00254 * 1 2 3 23 23 H 1.08995 * 109.47024 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47695 * 239.99499 * 2 1 3 25 25 H 1.09007 * 109.46976 * 119.99746 * 2 1 3 26 26 H 1.07996 * 119.85713 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.91960 * 179.73752 * 5 4 3 28 28 H 1.07998 * 124.02579 * 180.02562 * 10 9 8 29 29 H 0.96998 * 119.99882 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3429 2.0359 -1.1894 5 6 2.8112 3.3405 -1.2003 6 6 2.9581 4.0335 -0.0175 7 9 3.4102 5.3066 -0.0361 8 6 2.6415 3.4246 1.2025 9 16 2.7289 4.0544 2.8413 10 6 2.1607 2.6081 3.5302 11 6 1.9027 1.6594 2.5841 12 6 1.4225 0.3719 2.8912 13 1 0.7839 -0.1473 2.1919 14 6 1.7722 -0.2341 4.1005 15 7 1.1434 -1.3130 4.4990 16 14 3.1358 0.4933 5.1498 17 1 2.5541 1.4548 6.1206 18 1 3.8284 -0.5950 5.8855 19 1 4.1090 1.1984 4.2775 20 6 2.1756 2.1118 1.2162 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.2254 1.4992 -2.1191 27 1 3.0574 3.8167 -2.1378 28 1 2.0197 2.4583 4.5904 29 1 1.3864 -1.7338 5.3384 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396323999.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:43 Heat of formation + Delta-G solvation = -36.769791 kcal Electronic energy + Delta-G solvation = -15903.569109 eV Core-core repulsion = 13217.005452 eV Total energy + Delta-G solvation = -2686.563658 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.83670 -40.57325 -36.78385 -35.00819 -34.39855 -30.85618 -29.71087 -27.72781 -24.71781 -24.36223 -22.29412 -21.43721 -19.11350 -18.71229 -17.46892 -17.19176 -16.71505 -16.60971 -15.88643 -15.40440 -14.97238 -14.55539 -14.52807 -14.49810 -13.90139 -13.58315 -13.17175 -13.08309 -12.80487 -12.56445 -12.23134 -11.93051 -11.84849 -11.63315 -11.48774 -11.29768 -11.08945 -9.99337 -9.38103 -8.88091 -8.55245 -6.42616 -0.08850 0.17962 0.88195 1.12167 1.26975 1.40520 1.58828 1.69267 2.11887 2.59377 3.12355 3.30732 3.82698 3.93110 4.09768 4.32227 4.44729 4.65244 4.70229 4.75032 4.90114 4.96141 5.10850 5.17724 5.25646 5.32199 5.48954 5.51770 5.59836 5.79607 6.02898 6.32699 6.46928 6.80516 8.15787 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.021695 B = 0.011065 C = 0.007819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.312665 B = 2529.889062 C = 3580.296912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 C -0.046 4.046 4 C -0.103 4.103 5 C -0.122 4.122 6 C 0.087 3.913 7 F -0.145 7.145 8 C -0.186 4.186 9 S 0.081 5.919 10 C -0.458 4.458 11 C 0.075 3.925 12 C -0.446 4.446 13 H 0.110 0.890 14 C 0.057 3.943 15 N -0.841 5.841 16 Si 0.950 3.050 17 H -0.275 1.275 18 H -0.281 1.281 19 H -0.259 1.259 20 C -0.070 4.070 21 H 0.032 0.968 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.096 0.904 25 H 0.071 0.929 26 H 0.175 0.825 27 H 0.174 0.826 28 H 0.130 0.870 29 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.402 3.702 -10.093 11.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 C -0.048 4.048 4 C -0.124 4.124 5 C -0.143 4.143 6 C 0.062 3.938 7 F -0.124 7.124 8 C -0.302 4.302 9 S 0.343 5.657 10 C -0.593 4.593 11 C 0.065 3.935 12 C -0.478 4.478 13 H 0.127 0.873 14 C -0.158 4.158 15 N -0.468 5.468 16 Si 0.777 3.223 17 H -0.201 1.201 18 H -0.207 1.207 19 H -0.183 1.183 20 C -0.079 4.079 21 H 0.051 0.949 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.114 0.886 25 H 0.090 0.910 26 H 0.192 0.808 27 H 0.192 0.808 28 H 0.147 0.853 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.751 4.842 -9.175 10.733 hybrid contribution 0.025 -0.928 0.904 1.296 sum 2.775 3.913 -8.271 9.562 Atomic orbital electron populations 1.21662 0.94515 1.01890 1.01287 1.20765 0.96574 0.91770 1.03864 1.20106 0.96991 0.96886 0.90801 1.21030 0.99493 0.94051 0.97869 1.21266 1.01248 0.95442 0.96303 1.17177 1.04056 0.79948 0.92653 1.91434 1.87074 1.36592 1.97318 1.22954 1.09891 0.99523 0.97834 1.81651 1.73210 1.16262 0.94542 1.23978 1.33254 0.99867 1.02153 1.17721 0.92968 0.94025 0.88787 1.19471 1.26426 0.99004 1.02907 0.87262 1.26514 0.97666 0.94297 0.97352 1.69744 1.36993 1.18319 1.21751 0.85639 0.80503 0.77461 0.78703 1.20136 1.20747 1.18278 1.19445 1.01281 0.92281 0.94926 0.94873 0.91219 0.91782 0.88607 0.91043 0.80807 0.80837 0.85294 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.36 9.04 71.98 0.65 -3.71 15 2 C -0.09 -3.09 5.34 29.85 0.16 -2.93 15 3 C -0.05 -1.65 5.18 -19.47 -0.10 -1.75 15 4 C -0.10 -2.82 9.63 22.18 0.21 -2.61 15 5 C -0.12 -3.38 10.00 22.27 0.22 -3.16 15 6 C 0.09 3.11 7.32 22.60 0.17 3.28 15 7 F -0.15 -5.08 17.26 44.97 0.78 -4.31 15 8 C -0.19 -7.94 6.42 22.95 0.15 -7.79 15 9 S 0.08 3.55 22.96 -56.49 -1.30 2.26 15 10 C -0.46 -22.87 7.94 67.40 0.53 -22.34 15 11 C 0.07 3.76 5.20 -20.88 -0.11 3.66 15 12 C -0.45 -23.27 7.83 23.25 0.18 -23.09 15 13 H 0.11 5.65 3.98 -2.91 -0.01 5.64 15 14 C 0.06 2.99 5.49 85.16 0.47 3.46 15 15 N -0.84 -44.27 13.94 21.80 0.30 -43.97 15 16 Si 0.95 44.20 24.59 68.60 1.69 45.89 15 17 H -0.27 -12.69 6.69 99.48 0.67 -12.03 15 18 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 19 H -0.26 -12.58 6.73 99.48 0.67 -11.91 15 20 C -0.07 -3.10 5.99 -20.25 -0.12 -3.23 15 21 H 0.03 1.28 6.88 -2.39 -0.02 1.26 15 22 H 0.07 1.84 8.14 -2.38 -0.02 1.82 15 23 H 0.06 1.87 8.14 -2.39 -0.02 1.86 15 24 H 0.10 2.45 8.05 -2.39 -0.02 2.43 15 25 H 0.07 2.91 5.50 -2.38 -0.01 2.89 15 26 H 0.17 3.17 8.06 -2.91 -0.02 3.14 15 27 H 0.17 3.33 8.06 -2.91 -0.02 3.30 15 28 H 0.13 6.59 4.84 -2.91 -0.01 6.57 15 29 H 0.29 14.08 8.30 -92.71 -0.77 13.31 15 Total: -1.00 -58.58 254.62 5.00 -53.59 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 1.11 Total: 6.75 kcal Atomic # 6 Polarization: -62.62 SS G_CDS: 2.41 Total: -60.20 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.30 Total: -43.97 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.78 Total: -4.31 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.69 Total: 45.89 kcal Atomic # 16 Polarization: 3.55 SS G_CDS: -1.30 Total: 2.26 kcal Total: -58.58 5.00 -53.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396323999.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.816 kcal (2) G-P(sol) polarization free energy of solvation -58.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds