Wall clock time and date at job start Mon Mar 30 2020 05:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.46906 * 2 1 4 4 C 1.38985 * 119.90184 * 265.00377 * 3 2 1 5 5 C 1.35887 * 120.67408 * 179.70301 * 4 3 2 6 6 C 1.41994 * 120.51539 * 0.02562 * 5 4 3 7 7 C 1.39806 * 128.50948 * 180.02562 * 6 5 4 8 8 C 1.36952 * 115.02193 * 179.97438 * 7 6 5 9 9 C 1.39939 * 124.83384 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99731 * 0.02562 * 9 8 7 11 11 C 1.40175 * 119.99854 * 180.02562 * 9 8 7 12 12 N 1.30760 * 120.00257 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99903 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47243 * 90.00019 * 13 11 9 15 15 H 1.48503 * 109.47207 * 210.00501 * 13 11 9 16 16 H 1.48501 * 109.46924 * 330.00231 * 13 11 9 17 17 S 1.75454 * 110.32949 * 359.97438 * 8 7 6 18 18 C 1.40253 * 118.59679 * 359.97438 * 6 5 4 19 19 C 1.37841 * 119.89532 * 84.72394 * 3 2 1 20 20 F 1.35097 * 119.87443 * 0.27783 * 19 3 2 21 21 H 1.08997 * 109.46892 * 299.99568 * 1 2 3 22 22 H 1.08997 * 109.47017 * 59.99685 * 1 2 3 23 23 H 1.08998 * 109.46765 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46916 * 240.00883 * 2 1 3 25 25 H 1.08997 * 109.47144 * 119.99776 * 2 1 3 26 26 H 1.08001 * 119.66020 * 359.71772 * 4 3 2 27 27 H 1.07992 * 119.74100 * 179.97438 * 5 4 3 28 28 H 1.08001 * 122.48675 * 359.97438 * 7 6 5 29 29 H 0.96992 * 120.00064 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3622 2.0391 -1.2003 5 6 2.8109 3.3217 -1.2190 6 6 2.9515 4.0541 -0.0107 7 6 3.3927 5.3692 0.1637 8 6 3.4204 5.8034 1.4623 9 6 3.8262 7.0791 1.8701 10 1 4.1481 7.8035 1.1365 11 6 3.8149 7.4167 3.2305 12 7 3.4256 6.5394 4.1186 13 14 4.3559 9.1197 3.7748 14 1 3.1822 10.0293 3.7943 15 1 4.9439 9.0409 5.1362 16 1 5.3718 9.6430 2.8264 17 16 2.8746 4.5325 2.5418 18 6 2.6173 3.4258 1.1979 19 6 2.1577 2.1052 1.1899 20 9 1.8352 1.4978 2.3528 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5137 -0.8901 25 1 1.8934 -0.5138 0.8900 26 1 2.2607 1.4947 -2.1275 27 1 3.0633 3.7872 -2.1602 28 1 3.6896 5.9961 -0.6641 29 1 3.4181 6.7729 5.0600 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396325586.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:31 Heat of formation + Delta-G solvation = -46.693800 kcal Electronic energy + Delta-G solvation = -15346.626867 eV Core-core repulsion = 12659.632872 eV Total energy + Delta-G solvation = -2686.993995 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.00784 -38.24860 -35.31242 -34.08027 -31.81598 -29.36876 -28.51668 -25.61761 -23.03916 -22.15724 -20.65045 -19.35737 -18.11261 -16.15479 -16.01632 -15.33379 -14.95418 -14.77928 -13.89255 -13.49178 -13.45026 -13.24961 -12.72624 -12.32185 -12.20394 -11.91606 -11.55213 -11.50194 -11.31575 -11.17829 -10.67795 -10.55325 -10.28496 -10.24829 -10.00858 -9.35262 -9.12242 -8.31458 -7.43658 -7.26780 -6.41488 -4.78553 1.89912 2.28085 2.74716 2.80358 2.86963 3.17143 3.43604 3.52134 3.77404 4.48467 4.96297 5.21231 5.37213 5.45764 5.77912 5.80105 6.03361 6.10935 6.15822 6.33644 6.43698 6.56301 6.58284 6.80023 7.00125 7.06141 7.25796 7.29548 7.45532 7.66876 7.81425 7.99710 8.21696 8.31388 9.56807 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.045727 B = 0.006244 C = 0.005607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.177563 B = 4483.027764 C = 4992.582003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.064 4.064 3 C -0.202 4.202 4 C -0.080 4.080 5 C -0.160 4.160 6 C 0.039 3.961 7 C -0.363 4.363 8 C 0.054 3.946 9 C -0.378 4.378 10 H 0.101 0.899 11 C 0.051 3.949 12 N -0.772 5.772 13 Si 0.941 3.059 14 H -0.262 1.262 15 H -0.270 1.270 16 H -0.256 1.256 17 S 0.157 5.843 18 C -0.308 4.308 19 C 0.162 3.838 20 F -0.151 7.151 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.048 0.952 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.378 -3.187 -2.174 4.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 C -0.205 4.205 4 C -0.101 4.101 5 C -0.180 4.180 6 C 0.030 3.970 7 C -0.387 4.387 8 C -0.066 4.066 9 C -0.411 4.411 10 H 0.119 0.881 11 C -0.171 4.171 12 N -0.398 5.398 13 Si 0.763 3.237 14 H -0.187 1.187 15 H -0.195 1.195 16 H -0.179 1.179 17 S 0.418 5.582 18 C -0.423 4.423 19 C 0.139 3.861 20 F -0.130 7.130 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.127 0.873 27 H 0.125 0.875 28 H 0.128 0.872 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.600 -3.325 -0.337 3.705 hybrid contribution 0.353 0.727 -1.122 1.382 sum -1.247 -2.598 -1.459 3.230 Atomic orbital electron populations 1.21749 0.95851 1.00546 1.02012 1.20167 0.95365 0.93026 1.01587 1.19114 1.12452 0.97053 0.91912 1.19948 0.99720 0.94689 0.95713 1.20550 1.06317 0.94803 0.96349 1.17839 0.94611 0.93274 0.91249 1.19615 1.27126 0.96346 0.95648 1.21522 0.94285 0.96331 0.94449 1.19392 1.32356 0.96596 0.92804 0.88089 1.26374 0.93213 1.01155 0.96337 1.68602 1.31428 1.35217 1.04548 0.85717 0.79984 0.79122 0.78845 1.18688 1.19483 1.17911 1.84961 1.68661 1.01247 1.03337 1.23624 1.17103 0.98755 1.02847 1.16706 0.99731 0.89319 0.80360 1.91368 1.90517 1.83288 1.47836 0.92832 0.92837 0.93295 0.91865 0.92086 0.87271 0.87540 0.87222 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.90 37.16 0.37 -1.72 15 2 C -0.06 -1.03 5.82 -27.88 -0.16 -1.19 15 3 C -0.20 -4.04 5.14 -104.49 -0.54 -4.58 15 4 C -0.08 -1.54 9.58 -40.15 -0.38 -1.92 15 5 C -0.16 -3.39 10.04 -38.99 -0.39 -3.78 15 6 C 0.04 0.95 5.85 -107.11 -0.63 0.32 15 7 C -0.36 -9.15 10.14 -39.46 -0.40 -9.55 15 8 C 0.05 1.40 6.11 -39.41 -0.24 1.16 15 9 C -0.38 -9.19 9.27 -38.22 -0.35 -9.54 15 10 H 0.10 2.29 7.85 -52.48 -0.41 1.88 15 11 C 0.05 1.15 5.50 -17.28 -0.10 1.06 15 12 N -0.77 -17.96 10.58 55.56 0.59 -17.37 15 13 Si 0.94 16.58 29.56 -169.99 -5.03 11.55 15 14 H -0.26 -4.56 7.11 56.52 0.40 -4.16 15 15 H -0.27 -4.64 7.11 56.52 0.40 -4.24 15 16 H -0.26 -4.44 7.11 56.52 0.40 -4.04 15 17 S 0.16 3.99 20.13 -107.50 -2.16 1.83 15 18 C -0.31 -7.69 6.45 -38.23 -0.25 -7.93 15 19 C 0.16 3.72 7.26 -39.13 -0.28 3.43 15 20 F -0.15 -3.38 16.53 2.25 0.04 -3.35 15 21 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 22 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 23 H 0.05 0.59 8.14 -51.93 -0.42 0.16 15 24 H 0.06 0.88 8.05 -51.93 -0.42 0.47 15 25 H 0.06 0.98 7.77 -51.93 -0.40 0.58 15 26 H 0.11 1.72 8.06 -52.49 -0.42 1.30 15 27 H 0.11 2.00 8.06 -52.49 -0.42 1.57 15 28 H 0.11 2.60 8.06 -52.49 -0.42 2.18 15 29 H 0.30 6.28 8.29 -40.82 -0.34 5.94 15 LS Contribution 269.76 15.07 4.07 4.07 Total: -1.00 -26.37 269.76 -8.76 -35.13 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -2.90 Total: 2.39 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: -3.36 Total: -34.25 kcal Atomic # 7 Polarization: -17.96 SS G_CDS: 0.59 Total: -17.37 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.04 Total: -3.35 kcal Atomic # 14 Polarization: 16.58 SS G_CDS: -5.03 Total: 11.55 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -2.16 Total: 1.83 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -26.37 -8.76 -35.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396325586.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.568 kcal (2) G-P(sol) polarization free energy of solvation -26.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds