Wall clock time and date at job start Mon Mar 30 2020 05:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.46906 * 2 1 4 4 C 1.38985 * 119.90184 * 265.00377 * 3 2 1 5 5 C 1.35887 * 120.67408 * 179.70301 * 4 3 2 6 6 C 1.41994 * 120.51539 * 0.02562 * 5 4 3 7 7 C 1.39806 * 128.50948 * 180.02562 * 6 5 4 8 8 C 1.36952 * 115.02193 * 179.97438 * 7 6 5 9 9 C 1.39939 * 124.83384 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99731 * 0.02562 * 9 8 7 11 11 C 1.40175 * 119.99854 * 180.02562 * 9 8 7 12 12 N 1.30760 * 120.00257 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99903 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47243 * 90.00019 * 13 11 9 15 15 H 1.48503 * 109.47207 * 210.00501 * 13 11 9 16 16 H 1.48501 * 109.46924 * 330.00231 * 13 11 9 17 17 S 1.75454 * 110.32949 * 359.97438 * 8 7 6 18 18 C 1.40253 * 118.59679 * 359.97438 * 6 5 4 19 19 C 1.37841 * 119.89532 * 84.72394 * 3 2 1 20 20 F 1.35097 * 119.87443 * 0.27783 * 19 3 2 21 21 H 1.08997 * 109.46892 * 299.99568 * 1 2 3 22 22 H 1.08997 * 109.47017 * 59.99685 * 1 2 3 23 23 H 1.08998 * 109.46765 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46916 * 240.00883 * 2 1 3 25 25 H 1.08997 * 109.47144 * 119.99776 * 2 1 3 26 26 H 1.08001 * 119.66020 * 359.71772 * 4 3 2 27 27 H 1.07992 * 119.74100 * 179.97438 * 5 4 3 28 28 H 1.08001 * 122.48675 * 359.97438 * 7 6 5 29 29 H 0.96992 * 120.00064 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3622 2.0391 -1.2003 5 6 2.8109 3.3217 -1.2190 6 6 2.9515 4.0541 -0.0107 7 6 3.3927 5.3692 0.1637 8 6 3.4204 5.8034 1.4623 9 6 3.8262 7.0791 1.8701 10 1 4.1481 7.8035 1.1365 11 6 3.8149 7.4167 3.2305 12 7 3.4256 6.5394 4.1186 13 14 4.3559 9.1197 3.7748 14 1 3.1822 10.0293 3.7943 15 1 4.9439 9.0409 5.1362 16 1 5.3718 9.6430 2.8264 17 16 2.8746 4.5325 2.5418 18 6 2.6173 3.4258 1.1979 19 6 2.1577 2.1052 1.1899 20 9 1.8352 1.4978 2.3528 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5137 -0.8901 25 1 1.8934 -0.5138 0.8900 26 1 2.2607 1.4947 -2.1275 27 1 3.0633 3.7872 -2.1602 28 1 3.6896 5.9961 -0.6641 29 1 3.4181 6.7729 5.0600 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396325586.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:30 Heat of formation + Delta-G solvation = -58.470671 kcal Electronic energy + Delta-G solvation = -15347.137550 eV Core-core repulsion = 12659.632872 eV Total energy + Delta-G solvation = -2687.504678 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.75619 -39.94760 -37.02675 -35.71051 -33.35935 -31.09004 -30.17824 -27.27472 -24.62539 -23.80817 -22.23290 -21.10430 -19.93172 -17.91518 -17.70611 -17.00079 -16.53713 -16.52395 -15.51814 -15.12354 -14.94255 -14.73290 -14.19213 -13.97551 -13.89674 -13.37729 -13.18396 -13.04472 -12.98454 -12.68271 -12.11103 -11.99642 -11.86150 -11.71093 -11.64449 -11.02397 -11.01250 -10.11652 -9.21401 -8.97463 -8.30356 -6.62943 0.16813 0.54586 1.26242 1.29891 1.34844 1.53370 1.77976 1.82656 2.10636 2.75359 3.16091 3.54532 3.97029 4.10967 4.35926 4.52413 4.57129 4.68631 4.78645 4.85232 4.96562 5.07687 5.13786 5.31490 5.37445 5.42504 5.45517 5.60401 5.72584 5.88415 6.01512 6.26493 6.42789 6.48008 7.89788 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.045727 B = 0.006244 C = 0.005607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.177563 B = 4483.027764 C = 4992.582003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.065 4.065 3 C -0.185 4.185 4 C -0.072 4.072 5 C -0.164 4.164 6 C 0.014 3.986 7 C -0.390 4.390 8 C 0.029 3.971 9 C -0.405 4.405 10 H 0.109 0.891 11 C 0.014 3.986 12 N -0.798 5.798 13 Si 1.017 2.983 14 H -0.255 1.255 15 H -0.260 1.260 16 H -0.250 1.250 17 S 0.120 5.880 18 C -0.333 4.333 19 C 0.132 3.868 20 F -0.155 7.155 21 H 0.031 0.969 22 H 0.059 0.941 23 H 0.078 0.922 24 H 0.096 0.904 25 H 0.058 0.942 26 H 0.158 0.842 27 H 0.131 0.869 28 H 0.114 0.886 29 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.543 -3.910 -3.460 5.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 C -0.188 4.188 4 C -0.092 4.092 5 C -0.184 4.184 6 C 0.006 3.994 7 C -0.414 4.414 8 C -0.091 4.091 9 C -0.439 4.439 10 H 0.127 0.873 11 C -0.205 4.205 12 N -0.424 5.424 13 Si 0.834 3.166 14 H -0.180 1.180 15 H -0.184 1.184 16 H -0.173 1.173 17 S 0.379 5.621 18 C -0.448 4.448 19 C 0.108 3.892 20 F -0.134 7.134 21 H 0.050 0.950 22 H 0.078 0.922 23 H 0.097 0.903 24 H 0.115 0.885 25 H 0.077 0.923 26 H 0.175 0.825 27 H 0.149 0.851 28 H 0.132 0.868 29 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.773 -4.075 -1.637 4.736 hybrid contribution 0.354 0.786 -0.796 1.173 sum -1.419 -3.289 -2.433 4.330 Atomic orbital electron populations 1.21722 0.94486 1.02364 1.01280 1.20322 0.96434 0.90363 1.03158 1.19742 1.09416 0.98722 0.90938 1.20482 0.97467 0.94003 0.97230 1.20922 1.05777 0.95593 0.96062 1.18164 0.95300 0.93373 0.92544 1.19789 1.28743 0.97283 0.95628 1.21846 0.95316 0.97126 0.94807 1.19776 1.33257 0.96471 0.94359 0.87276 1.27413 0.92357 1.05215 0.95499 1.68656 1.31267 1.37141 1.05358 0.84632 0.79697 0.73560 0.78667 1.17953 1.18391 1.17324 1.84783 1.69895 1.02464 1.04910 1.23832 1.18511 0.99763 1.02665 1.17057 1.01386 0.89235 0.81499 1.91347 1.90678 1.83136 1.48222 0.94989 0.92184 0.90268 0.88548 0.92303 0.82465 0.85105 0.86832 0.87253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.90 71.98 0.71 -2.91 15 2 C -0.07 -1.87 5.82 29.85 0.17 -1.69 15 3 C -0.19 -6.98 5.14 -19.78 -0.10 -7.08 15 4 C -0.07 -2.51 9.58 21.90 0.21 -2.30 15 5 C -0.16 -6.65 10.04 22.65 0.23 -6.43 15 6 C 0.01 0.71 5.85 -21.48 -0.13 0.58 15 7 C -0.39 -20.42 10.14 22.35 0.23 -20.19 15 8 C 0.03 1.55 6.11 22.38 0.14 1.68 15 9 C -0.41 -20.37 9.27 23.15 0.21 -20.16 15 10 H 0.11 5.09 7.85 -2.91 -0.02 5.07 15 11 C 0.01 0.65 5.50 85.32 0.47 1.12 15 12 N -0.80 -38.07 10.58 21.87 0.23 -37.84 15 13 Si 1.02 33.48 29.56 68.60 2.03 35.51 15 14 H -0.26 -8.09 7.11 99.48 0.71 -7.39 15 15 H -0.26 -8.06 7.11 99.48 0.71 -7.36 15 16 H -0.25 -7.95 7.11 99.48 0.71 -7.24 15 17 S 0.12 6.40 20.13 -56.49 -1.14 5.26 15 18 C -0.33 -17.09 6.45 23.15 0.15 -16.95 15 19 C 0.13 6.06 7.26 22.56 0.16 6.22 15 20 F -0.16 -7.05 16.53 44.97 0.74 -6.30 15 21 H 0.03 0.94 8.14 -2.39 -0.02 0.92 15 22 H 0.06 1.46 8.14 -2.39 -0.02 1.44 15 23 H 0.08 1.57 8.14 -2.39 -0.02 1.55 15 24 H 0.10 2.17 8.05 -2.39 -0.02 2.15 15 25 H 0.06 1.73 7.77 -2.39 -0.02 1.71 15 26 H 0.16 4.02 8.06 -2.91 -0.02 4.00 15 27 H 0.13 4.58 8.06 -2.91 -0.02 4.56 15 28 H 0.11 5.60 8.06 -2.91 -0.02 5.58 15 29 H 0.31 13.17 8.29 -92.71 -0.77 12.40 15 Total: -1.00 -59.56 269.76 5.48 -54.08 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 1.16 Total: 17.40 kcal Atomic # 6 Polarization: -70.56 SS G_CDS: 2.46 Total: -68.11 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.23 Total: -37.84 kcal Atomic # 9 Polarization: -7.05 SS G_CDS: 0.74 Total: -6.30 kcal Atomic # 14 Polarization: 33.48 SS G_CDS: 2.03 Total: 35.51 kcal Atomic # 16 Polarization: 6.40 SS G_CDS: -1.14 Total: 5.26 kcal Total: -59.56 5.48 -54.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396325586.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.393 kcal (2) G-P(sol) polarization free energy of solvation -59.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds