Wall clock time and date at job start Mon Mar 30 2020 05:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47069 * 2 1 4 4 C 1.35925 * 119.66433 * 90.00176 * 3 2 1 5 5 C 1.41953 * 120.51971 * 179.72167 * 4 3 2 6 6 C 1.39803 * 128.52423 * 179.97438 * 5 4 3 7 7 C 1.36952 * 115.02739 * 180.02562 * 6 5 4 8 8 C 1.39935 * 124.83318 * 179.97438 * 7 6 5 9 9 H 1.07997 * 119.99981 * 359.97438 * 8 7 6 10 10 C 1.40177 * 120.00276 * 179.97438 * 8 7 6 11 11 N 1.30762 * 119.99346 * 0.02562 * 10 8 7 12 12 Si 1.86792 * 120.00355 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47058 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47318 * 119.99810 * 12 10 8 15 15 H 1.48505 * 109.47228 * 240.00233 * 12 10 8 16 16 S 1.75461 * 110.33311 * 359.97438 * 7 6 5 17 17 C 1.40290 * 118.59542 * 359.97438 * 5 4 3 18 18 C 1.39799 * 119.76289 * 359.96965 * 17 5 4 19 19 F 1.35105 * 119.87356 * 180.02562 * 18 17 5 20 20 C 1.37875 * 120.24550 * 0.06647 * 18 17 5 21 21 H 1.08997 * 109.47373 * 300.00227 * 1 2 3 22 22 H 1.09006 * 109.47241 * 59.99930 * 1 2 3 23 23 H 1.09002 * 109.47186 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47265 * 240.00330 * 2 1 3 25 25 H 1.08994 * 109.47544 * 120.00270 * 2 1 3 26 26 H 1.08001 * 119.73343 * 359.74352 * 4 3 2 27 27 H 1.08000 * 122.48504 * 0.02562 * 6 5 4 28 28 H 0.97000 * 119.99866 * 180.02562 * 11 10 8 29 29 H 1.08001 * 119.89303 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2566 2.0550 1.1811 5 6 2.7353 3.3912 1.2023 6 6 3.0205 4.1966 2.3089 7 6 3.4715 5.4545 2.0092 8 6 3.8163 6.4264 2.9550 9 1 3.7340 6.2071 4.0093 10 6 4.2684 7.6848 2.5342 11 7 4.3675 7.9504 1.2577 12 14 4.7280 8.9824 3.7967 13 1 4.5266 8.4368 5.1632 14 1 6.1526 9.3625 3.6200 15 1 3.8694 10.1798 3.6109 16 16 3.5555 5.6738 0.2704 17 6 2.9712 4.0394 -0.0193 18 6 2.7336 3.3645 -1.2203 19 9 2.9605 3.9864 -2.3980 20 6 2.2678 2.0668 -1.2073 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 2.0694 1.5381 2.1107 27 1 2.8945 3.8522 3.3248 28 1 4.6807 8.8210 0.9664 29 1 2.0859 1.5509 -2.1385 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396327472.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:52 Heat of formation + Delta-G solvation = -59.458170 kcal Electronic energy + Delta-G solvation = -15223.142368 eV Core-core repulsion = 12535.594869 eV Total energy + Delta-G solvation = -2687.547500 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.77800 -40.06584 -37.05247 -35.69417 -33.43220 -30.91333 -30.05134 -27.39035 -25.04595 -23.41950 -22.64759 -20.57192 -19.95536 -18.04064 -17.57880 -17.17306 -16.53974 -16.50854 -15.61815 -15.21271 -15.00468 -14.72142 -14.25136 -13.97906 -13.64380 -13.46109 -13.26378 -13.14749 -12.93764 -12.38831 -12.23574 -11.99394 -11.84615 -11.73638 -11.63983 -11.03014 -11.00421 -10.07446 -9.31031 -8.98516 -8.27823 -6.65677 0.16186 0.50349 1.25508 1.29783 1.34915 1.55355 1.77401 1.82343 2.10544 2.73646 3.13998 3.47367 3.96258 4.13848 4.39726 4.47209 4.60421 4.70843 4.75274 4.84739 5.09038 5.10161 5.14257 5.26961 5.32210 5.43075 5.45525 5.52442 5.80183 5.88077 6.01183 6.25155 6.41785 6.47223 7.88927 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.038606 B = 0.006239 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.098253 B = 4486.719463 C = 5116.149320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 C -0.042 4.042 4 C -0.167 4.167 5 C 0.023 3.977 6 C -0.391 4.391 7 C 0.030 3.970 8 C -0.403 4.403 9 H 0.110 0.890 10 C 0.014 3.986 11 N -0.797 5.797 12 Si 1.018 2.982 13 H -0.249 1.249 14 H -0.258 1.258 15 H -0.258 1.258 16 S 0.122 5.878 17 C -0.339 4.339 18 C 0.135 3.865 19 F -0.156 7.156 20 C -0.217 4.217 21 H 0.046 0.954 22 H 0.049 0.951 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.126 0.874 27 H 0.113 0.887 28 H 0.314 0.686 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.412 -5.373 0.108 5.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 C -0.044 4.044 4 C -0.186 4.186 5 C 0.015 3.985 6 C -0.415 4.415 7 C -0.090 4.090 8 C -0.436 4.436 9 H 0.128 0.872 10 C -0.205 4.205 11 N -0.422 5.422 12 Si 0.835 3.165 13 H -0.172 1.172 14 H -0.182 1.182 15 H -0.182 1.182 16 S 0.381 5.619 17 C -0.454 4.454 18 C 0.112 3.888 19 F -0.135 7.135 20 C -0.238 4.238 21 H 0.065 0.935 22 H 0.069 0.931 23 H 0.099 0.901 24 H 0.104 0.896 25 H 0.100 0.900 26 H 0.144 0.856 27 H 0.131 0.869 28 H 0.128 0.872 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.924 -4.009 -1.017 4.562 hybrid contribution -0.088 -0.241 0.958 0.992 sum -2.012 -4.250 -0.059 4.703 Atomic orbital electron populations 1.21721 0.93991 1.02581 1.01644 1.20555 0.96715 0.90107 1.03781 1.19320 0.96809 0.97241 0.91052 1.20710 1.06272 0.93180 0.98475 1.18127 0.94946 0.94402 0.90982 1.19766 1.28494 0.96002 0.97253 1.21858 0.95142 0.96217 0.95750 1.19818 1.32657 0.95566 0.95539 0.87233 1.27427 0.92320 1.01919 0.98856 1.68661 1.30515 1.25459 1.17600 0.84583 0.79051 0.75489 0.77384 1.17195 1.18227 1.18239 1.84768 1.69846 1.04820 1.02452 1.23807 1.19960 1.05473 0.96196 1.17229 1.01444 0.92003 0.78145 1.91374 1.92720 1.83372 1.46002 1.20654 1.10486 0.92818 0.99849 0.93513 0.93136 0.90116 0.89628 0.90043 0.85603 0.86862 0.87198 0.83653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.89 71.98 0.71 -2.45 15 2 C -0.07 -1.87 6.04 29.85 0.18 -1.69 15 3 C -0.04 -1.50 5.08 -20.23 -0.10 -1.60 15 4 C -0.17 -6.91 9.65 22.65 0.22 -6.69 15 5 C 0.02 1.17 5.85 -21.48 -0.13 1.05 15 6 C -0.39 -20.47 10.14 22.35 0.23 -20.25 15 7 C 0.03 1.62 6.11 22.38 0.14 1.75 15 8 C -0.40 -20.13 9.27 23.15 0.21 -19.92 15 9 H 0.11 5.10 7.85 -2.91 -0.02 5.08 15 10 C 0.01 0.64 5.50 85.32 0.47 1.11 15 11 N -0.80 -37.73 10.58 21.87 0.23 -37.50 15 12 Si 1.02 33.25 29.56 68.60 2.03 35.28 15 13 H -0.25 -7.84 7.11 99.48 0.71 -7.14 15 14 H -0.26 -8.05 7.11 99.48 0.71 -7.34 15 15 H -0.26 -8.06 7.11 99.48 0.71 -7.35 15 16 S 0.12 6.48 20.13 -56.49 -1.14 5.34 15 17 C -0.34 -17.49 6.45 23.15 0.15 -17.34 15 18 C 0.14 6.27 7.32 22.56 0.17 6.43 15 19 F -0.16 -7.10 17.26 44.97 0.78 -6.32 15 20 C -0.22 -8.40 9.66 22.35 0.22 -8.18 15 21 H 0.05 1.12 8.14 -2.39 -0.02 1.11 15 22 H 0.05 1.16 8.14 -2.38 -0.02 1.15 15 23 H 0.08 1.35 8.14 -2.39 -0.02 1.33 15 24 H 0.09 1.84 8.08 -2.38 -0.02 1.82 15 25 H 0.08 1.84 8.07 -2.39 -0.02 1.82 15 26 H 0.13 4.60 8.06 -2.91 -0.02 4.58 15 27 H 0.11 5.60 8.06 -2.91 -0.02 5.57 15 28 H 0.31 13.04 8.29 -92.71 -0.77 12.27 15 29 H 0.15 4.64 8.06 -2.91 -0.02 4.62 15 Total: -1.00 -58.97 270.72 5.52 -53.44 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 1.16 Total: 17.52 kcal Atomic # 6 Polarization: -70.23 SS G_CDS: 2.46 Total: -67.77 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.23 Total: -37.50 kcal Atomic # 9 Polarization: -7.10 SS G_CDS: 0.78 Total: -6.32 kcal Atomic # 14 Polarization: 33.25 SS G_CDS: 2.03 Total: 35.28 kcal Atomic # 16 Polarization: 6.48 SS G_CDS: -1.14 Total: 5.34 kcal Total: -58.97 5.52 -53.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396327472.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.013 kcal (2) G-P(sol) polarization free energy of solvation -58.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds