Wall clock time and date at job start Mon Mar 30 2020 05:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47149 * 2 1 4 4 C 1.35753 * 119.94720 * 265.00387 * 3 2 1 5 5 C 1.40373 * 120.83644 * 180.27459 * 4 3 2 6 6 S 1.75990 * 130.23225 * 179.70044 * 5 4 3 7 7 C 1.75254 * 92.27919 * 180.02562 * 6 5 4 8 8 F 1.35105 * 124.25498 * 180.02562 * 7 6 5 9 9 C 1.32022 * 111.49574 * 359.45550 * 7 6 5 10 10 C 1.40206 * 120.16064 * 359.48904 * 5 4 3 11 11 C 1.40473 * 119.04237 * 0.50019 * 10 5 4 12 12 C 1.39960 * 119.98591 * 359.75079 * 11 10 5 13 13 C 1.41268 * 120.06749 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00438 * 149.67980 * 13 12 11 15 15 C 1.39854 * 119.99929 * 329.68266 * 13 12 11 16 16 N 1.30902 * 120.00386 * 161.97929 * 15 13 12 17 17 Si 1.86803 * 120.00071 * 341.98307 * 15 13 12 18 18 H 1.48498 * 109.47350 * 95.38441 * 17 15 13 19 19 H 1.48502 * 109.47454 * 215.39117 * 17 15 13 20 20 H 1.48503 * 109.46792 * 335.38795 * 17 15 13 21 21 H 1.08997 * 109.47150 * 299.99758 * 1 2 3 22 22 H 1.09001 * 109.47281 * 60.00174 * 1 2 3 23 23 H 1.09001 * 109.46807 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47150 * 240.00242 * 2 1 3 25 25 H 1.09001 * 109.47281 * 119.99826 * 2 1 3 26 26 H 1.08000 * 119.58345 * 359.97438 * 4 3 2 27 27 H 1.08000 * 122.58754 * 179.97438 * 9 7 6 28 28 H 1.08006 * 120.00926 * 179.77847 * 11 10 5 29 29 H 0.96993 * 120.00206 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3548 2.0256 -1.1718 5 6 2.8299 3.3464 -1.1930 6 16 3.3214 4.3559 -2.5482 7 6 3.7041 5.7039 -1.4956 8 9 4.1722 6.8959 -1.9262 9 6 3.4662 5.4123 -0.2302 10 6 2.9677 4.0647 0.0031 11 6 2.6342 3.4397 1.2162 12 6 2.1671 2.1204 1.2181 13 6 1.8307 1.4904 2.4370 14 1 1.0587 0.7355 2.4597 15 6 2.4975 1.8443 3.6143 16 7 1.9760 1.5451 4.7771 17 14 4.1322 2.7441 3.5276 18 1 3.8998 4.2058 3.6491 19 1 5.0078 2.2882 4.6370 20 1 4.7887 2.4537 2.2276 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.2491 1.4821 -2.0991 27 1 3.6399 6.1151 0.5713 28 1 2.7378 3.9774 2.1472 29 1 2.4386 1.7902 5.5936 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396328501.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:07 Heat of formation + Delta-G solvation = -34.884865 kcal Electronic energy + Delta-G solvation = -15545.153629 eV Core-core repulsion = 12858.671708 eV Total energy + Delta-G solvation = -2686.481921 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.09917 -40.35369 -36.99533 -35.39967 -33.30478 -32.16221 -29.28472 -27.24009 -24.52660 -23.86578 -22.79703 -21.07493 -19.36751 -19.21481 -17.20849 -17.08222 -16.91903 -16.77576 -15.99957 -15.33094 -15.13514 -14.65850 -14.59356 -14.21952 -14.04067 -13.58382 -13.39672 -13.02922 -12.75168 -12.61812 -12.21431 -12.06446 -11.74365 -11.50869 -11.42912 -11.26549 -10.95731 -10.30934 -9.17332 -8.92827 -8.66247 -6.47363 -0.21768 0.21702 0.58381 0.98932 1.19632 1.27000 1.45105 1.46414 2.09408 2.47724 3.19390 3.37928 4.01043 4.13310 4.31260 4.44626 4.50242 4.65687 4.72585 4.78210 4.90267 4.98407 5.12210 5.20496 5.28798 5.37964 5.52270 5.52586 5.68068 5.91587 6.11320 6.33568 6.63642 6.80029 8.13119 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.021102 B = 0.009291 C = 0.006791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.560578 B = 3012.891389 C = 4121.856288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.066 4.066 3 C -0.130 4.130 4 C -0.053 4.053 5 C -0.237 4.237 6 S 0.104 5.896 7 C 0.003 3.997 8 F -0.107 7.107 9 C -0.166 4.166 10 C -0.039 4.039 11 C -0.237 4.237 12 C 0.082 3.918 13 C -0.456 4.456 14 H 0.082 0.918 15 C 0.056 3.944 16 N -0.836 5.836 17 Si 0.949 3.051 18 H -0.266 1.266 19 H -0.278 1.278 20 H -0.256 1.256 21 H 0.034 0.966 22 H 0.056 0.944 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.060 0.940 26 H 0.137 0.863 27 H 0.156 0.844 28 H 0.099 0.901 29 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.236 1.846 -9.380 9.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 C -0.133 4.133 4 C -0.075 4.075 5 C -0.352 4.352 6 S 0.362 5.638 7 C -0.130 4.130 8 F -0.086 7.086 9 C -0.199 4.199 10 C -0.045 4.045 11 C -0.260 4.260 12 C 0.078 3.922 13 C -0.485 4.485 14 H 0.100 0.900 15 C -0.160 4.160 16 N -0.461 5.461 17 Si 0.774 3.226 18 H -0.192 1.192 19 H -0.205 1.205 20 H -0.180 1.180 21 H 0.053 0.947 22 H 0.076 0.924 23 H 0.089 0.911 24 H 0.100 0.900 25 H 0.079 0.921 26 H 0.155 0.845 27 H 0.174 0.826 28 H 0.116 0.884 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.310 1.700 -10.658 11.037 hybrid contribution 0.553 1.038 2.137 2.439 sum 2.864 2.738 -8.521 9.397 Atomic orbital electron populations 1.21659 0.94884 1.01743 1.01134 1.20322 0.96152 0.91607 1.02259 1.19876 1.04287 0.97089 0.92027 1.19925 0.98264 0.91273 0.98015 1.22211 1.17812 1.00406 0.94776 1.83443 1.71315 1.02476 1.06548 1.21333 1.08425 0.87020 0.96192 1.91478 1.86378 1.41103 1.89670 1.21292 1.04716 0.97541 0.96394 1.18675 1.00048 0.91916 0.93891 1.20776 1.14663 0.95758 0.94769 1.17598 0.90123 0.90817 0.93629 1.19487 1.18582 1.19910 0.90494 0.90014 1.26655 1.01388 0.93590 0.94376 1.69730 1.38507 1.38289 0.99621 0.85692 0.79091 0.78950 0.78822 1.19159 1.20497 1.18012 0.94694 0.92449 0.91143 0.89965 0.92123 0.84505 0.82635 0.88374 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.34 9.79 71.98 0.70 -3.63 15 2 C -0.07 -2.28 5.40 29.85 0.16 -2.12 15 3 C -0.13 -5.32 5.14 -19.73 -0.10 -5.42 15 4 C -0.05 -1.97 9.60 22.21 0.21 -1.76 15 5 C -0.24 -9.26 6.50 23.27 0.15 -9.10 15 6 S 0.10 3.34 23.23 -56.49 -1.31 2.03 15 7 C 0.00 0.12 8.18 66.90 0.55 0.66 15 8 F -0.11 -3.39 17.32 44.97 0.78 -2.61 15 9 C -0.17 -6.18 10.40 23.24 0.24 -5.93 15 10 C -0.04 -1.68 6.03 -20.36 -0.12 -1.81 15 11 C -0.24 -11.13 7.22 23.23 0.17 -10.97 15 12 C 0.08 3.90 5.08 -21.41 -0.11 3.79 15 13 C -0.46 -23.24 8.50 23.41 0.20 -23.04 15 14 H 0.08 4.34 6.31 -2.91 -0.02 4.33 15 15 C 0.06 2.85 5.40 85.22 0.46 3.31 15 16 N -0.84 -43.26 13.93 21.81 0.30 -42.96 15 17 Si 0.95 41.79 24.52 68.60 1.68 43.47 15 18 H -0.27 -11.39 6.72 99.48 0.67 -10.72 15 19 H -0.28 -11.55 7.11 99.48 0.71 -10.85 15 20 H -0.26 -11.70 6.87 99.48 0.68 -11.02 15 21 H 0.03 1.28 7.20 -2.39 -0.02 1.26 15 22 H 0.06 1.66 8.14 -2.39 -0.02 1.64 15 23 H 0.07 1.85 8.14 -2.39 -0.02 1.83 15 24 H 0.08 2.33 8.03 -2.39 -0.02 2.31 15 25 H 0.06 2.29 7.11 -2.39 -0.02 2.28 15 26 H 0.14 4.15 8.04 -2.91 -0.02 4.12 15 27 H 0.16 5.21 8.06 -2.91 -0.02 5.18 15 28 H 0.10 4.67 4.75 -2.91 -0.01 4.66 15 29 H 0.29 13.81 8.30 -92.71 -0.77 13.04 15 Total: -1.00 -53.11 261.02 5.08 -48.02 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 1.12 Total: 8.06 kcal Atomic # 6 Polarization: -58.53 SS G_CDS: 2.51 Total: -56.01 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.30 Total: -42.96 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.78 Total: -2.61 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.68 Total: 43.47 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -1.31 Total: 2.03 kcal Total: -53.11 5.08 -48.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396328501.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.137 kcal (2) G-P(sol) polarization free energy of solvation -53.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds