Wall clock time and date at job start Mon Mar 30 2020 05:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47227 * 2 1 4 4 C 1.35217 * 119.80938 * 265.00014 * 3 2 1 5 5 C 1.42013 * 120.85943 * 180.02562 * 4 3 2 6 6 C 1.40332 * 128.59422 * 179.97438 * 5 4 3 7 7 C 1.32988 * 115.80872 * 180.02562 * 6 5 4 8 8 F 1.35100 * 124.59809 * 180.02562 * 7 6 5 9 9 S 1.75473 * 110.79936 * 359.97438 * 7 6 5 10 10 C 1.40436 * 119.01135 * 359.97438 * 5 4 3 11 11 C 1.38720 * 120.16167 * 0.02562 * 10 5 4 12 12 C 1.40455 * 119.98840 * 359.74350 * 11 10 5 13 13 C 1.40959 * 120.20094 * 180.24712 * 12 11 10 14 14 H 1.08001 * 120.00399 * 206.04633 * 13 12 11 15 15 C 1.39836 * 120.00233 * 26.05668 * 13 12 11 16 16 N 1.30926 * 119.99682 * 15.22435 * 15 13 12 17 17 Si 1.86793 * 120.00354 * 195.22593 * 15 13 12 18 18 H 1.48500 * 109.47073 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47016 * 119.99549 * 17 15 13 20 20 H 1.48491 * 109.47230 * 239.99801 * 17 15 13 21 21 H 1.08997 * 109.47100 * 60.00333 * 1 2 3 22 22 H 1.09000 * 109.47286 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47345 * 300.00249 * 1 2 3 24 24 H 1.08998 * 109.46672 * 119.99976 * 2 1 3 25 25 H 1.08996 * 109.47225 * 239.99889 * 2 1 3 26 26 H 1.08002 * 119.57163 * 359.97438 * 4 3 2 27 27 H 1.07998 * 122.09567 * 359.97438 * 6 5 4 28 28 H 1.08003 * 120.01039 * 180.02562 * 11 10 5 29 29 H 0.96994 * 120.00055 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3528 2.0204 -1.1688 5 6 2.8288 3.3582 -1.1947 6 6 3.2058 4.1319 -2.3031 7 6 3.6186 5.3670 -2.0335 8 9 4.0212 6.2613 -2.9628 9 16 3.5679 5.6782 -0.3073 10 6 2.9634 4.0567 0.0162 11 6 2.6349 3.4422 1.2156 12 6 2.1611 2.1200 1.2203 13 6 1.8210 1.4929 2.4361 14 1 1.8659 0.4171 2.5200 15 6 1.4252 2.2638 3.5336 16 7 1.0825 3.5160 3.3645 17 14 1.3855 1.5070 5.2409 18 1 1.8148 0.0875 5.1633 19 1 2.3056 2.2546 6.1353 20 1 0.0043 1.5770 5.7814 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 2.2462 1.4747 -2.0947 27 1 3.1643 3.7481 -3.3117 28 1 2.7389 3.9819 2.1454 29 1 0.8083 4.0508 4.1258 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396328895.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:47 Heat of formation + Delta-G solvation = -26.215772 kcal Electronic energy + Delta-G solvation = -15471.913346 eV Core-core repulsion = 12785.807345 eV Total energy + Delta-G solvation = -2686.106001 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.16501 -38.56572 -35.38943 -33.74774 -31.67559 -29.20609 -28.28344 -25.20954 -23.10066 -21.93668 -21.12129 -19.04955 -17.70385 -17.24346 -15.57537 -15.31454 -15.03842 -14.73711 -14.21628 -13.81581 -13.17547 -12.96109 -12.73637 -12.47368 -12.19625 -11.80283 -11.58990 -11.30146 -11.22135 -11.00487 -10.72051 -10.38771 -10.13915 -9.84007 -9.73117 -9.47581 -9.14830 -8.58242 -7.34547 -7.04528 -6.80365 -4.56865 1.65732 2.14974 2.63692 2.80933 2.85486 2.93541 2.97920 3.35186 3.71183 4.36254 5.17766 5.27487 5.78121 5.81619 5.94402 6.11564 6.20280 6.39556 6.44981 6.51152 6.56459 6.72500 6.85130 6.92647 6.98190 7.12490 7.17934 7.55684 7.60456 7.71888 7.91574 8.25946 8.53429 8.60133 9.85989 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.024908 B = 0.007718 C = 0.006102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.868729 B = 3626.796602 C = 4587.468271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.062 4.062 3 C -0.158 4.158 4 C -0.047 4.047 5 C -0.203 4.203 6 C -0.093 4.093 7 C -0.081 4.081 8 F -0.126 7.126 9 S 0.023 5.977 10 C -0.068 4.068 11 C -0.155 4.155 12 C 0.132 3.868 13 C -0.426 4.426 14 H 0.091 0.909 15 C 0.070 3.930 16 N -0.772 5.772 17 Si 0.912 3.088 18 H -0.257 1.257 19 H -0.269 1.269 20 H -0.271 1.271 21 H 0.044 0.956 22 H 0.040 0.960 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.048 0.952 26 H 0.098 0.902 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.398 -2.587 -1.811 3.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.100 4.100 3 C -0.159 4.159 4 C -0.067 4.067 5 C -0.208 4.208 6 C -0.125 4.125 7 C -0.213 4.213 8 F -0.105 7.105 9 S 0.281 5.719 10 C -0.183 4.183 11 C -0.182 4.182 12 C 0.126 3.874 13 C -0.455 4.455 14 H 0.109 0.891 15 C -0.151 4.151 16 N -0.395 5.395 17 Si 0.736 3.264 18 H -0.180 1.180 19 H -0.194 1.194 20 H -0.197 1.197 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.066 0.934 26 H 0.116 0.884 27 H 0.146 0.854 28 H 0.144 0.856 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.694 -1.054 -0.956 1.583 hybrid contribution -0.354 -0.998 -0.376 1.124 sum 0.341 -2.052 -1.332 2.470 Atomic orbital electron populations 1.21678 0.96073 0.99850 1.02231 1.20214 0.95331 0.93682 1.00731 1.19411 1.06801 0.96786 0.92952 1.20044 0.98015 0.92087 0.96593 1.17245 1.16464 0.96432 0.90628 1.19882 1.00449 0.92351 0.99822 1.21030 1.18168 0.91813 0.90245 1.91362 1.89645 1.66598 1.62927 1.83875 1.73965 1.15725 0.98343 1.22146 1.04241 0.94019 0.97937 1.20577 1.06498 0.96869 0.94260 1.17335 0.87548 0.90806 0.91707 1.19729 1.36098 0.95405 0.94270 0.89140 1.26057 0.92629 0.94610 1.01797 1.69858 1.28123 1.07893 1.33615 0.86167 0.78946 0.80675 0.80618 1.18037 1.19392 1.19656 0.93661 0.94077 0.91738 0.91479 0.93371 0.88400 0.85380 0.85572 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.89 37.16 0.37 -2.02 15 2 C -0.06 -1.13 5.55 -27.88 -0.15 -1.28 15 3 C -0.16 -3.42 5.13 -104.56 -0.54 -3.96 15 4 C -0.05 -0.99 9.59 -39.21 -0.38 -1.37 15 5 C -0.20 -4.56 5.89 -106.84 -0.63 -5.19 15 6 C -0.09 -1.92 10.14 -40.61 -0.41 -2.34 15 7 C -0.08 -1.69 8.27 28.91 0.24 -1.45 15 8 F -0.13 -2.51 17.32 2.25 0.04 -2.47 15 9 S 0.02 0.49 23.29 -107.50 -2.50 -2.01 15 10 C -0.07 -1.62 6.45 -38.58 -0.25 -1.87 15 11 C -0.16 -3.85 8.70 -38.57 -0.34 -4.19 15 12 C 0.13 3.18 5.56 -106.90 -0.59 2.58 15 13 C -0.43 -9.86 8.22 -37.95 -0.31 -10.17 15 14 H 0.09 1.97 6.33 -52.49 -0.33 1.63 15 15 C 0.07 1.57 5.17 -17.34 -0.09 1.48 15 16 N -0.77 -18.24 10.89 55.54 0.61 -17.63 15 17 Si 0.91 16.77 29.59 -169.99 -5.03 11.74 15 18 H -0.26 -4.64 7.11 56.52 0.40 -4.23 15 19 H -0.27 -4.95 7.11 56.52 0.40 -4.54 15 20 H -0.27 -4.95 7.11 56.52 0.40 -4.55 15 21 H 0.04 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.04 0.58 8.14 -51.93 -0.42 0.16 15 23 H 0.06 1.21 7.92 -51.93 -0.41 0.80 15 24 H 0.07 1.21 6.47 -51.93 -0.34 0.87 15 25 H 0.05 0.77 8.01 -51.93 -0.42 0.36 15 26 H 0.10 1.80 8.02 -52.49 -0.42 1.37 15 27 H 0.13 2.28 8.06 -52.49 -0.42 1.86 15 28 H 0.13 3.24 6.15 -52.48 -0.32 2.92 15 29 H 0.29 6.15 8.30 -40.82 -0.34 5.81 15 LS Contribution 266.53 15.07 4.02 4.02 Total: -1.00 -24.76 266.53 -8.60 -33.36 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -2.64 Total: 2.77 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: -3.08 Total: -29.78 kcal Atomic # 7 Polarization: -18.24 SS G_CDS: 0.61 Total: -17.63 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.03 Total: 11.74 kcal Atomic # 16 Polarization: 0.49 SS G_CDS: -2.50 Total: -2.01 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -24.76 -8.60 -33.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396328895.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.144 kcal (2) G-P(sol) polarization free energy of solvation -24.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds