Wall clock time and date at job start Mon Mar 30 2020 05:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47384 * 2 1 4 4 C 1.35438 * 119.81210 * 270.27190 * 3 2 1 5 5 F 1.35097 * 119.59307 * 359.73078 * 4 3 2 6 6 C 1.42182 * 120.81727 * 180.21870 * 4 3 2 7 7 C 1.40422 * 128.63426 * 179.81121 * 6 4 3 8 8 C 1.32546 * 115.87994 * 179.71788 * 7 6 4 9 9 S 1.75480 * 110.83448 * 359.97438 * 8 7 6 10 10 C 1.40326 * 118.99875 * 359.51439 * 6 4 3 11 11 C 1.38879 * 120.17727 * 0.23331 * 10 6 4 12 12 C 1.40412 * 120.01560 * 359.97438 * 11 10 6 13 13 C 1.41002 * 120.19262 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00023 * 153.73063 * 13 12 11 15 15 C 1.39860 * 119.99817 * 333.73963 * 13 12 11 16 16 N 1.30897 * 120.00121 * 343.29124 * 15 13 12 17 17 Si 1.86803 * 119.99892 * 163.29547 * 15 13 12 18 18 H 1.48500 * 109.46898 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47125 * 120.00071 * 17 15 13 20 20 H 1.48501 * 109.47069 * 239.99757 * 17 15 13 21 21 H 1.08995 * 109.47125 * 300.00310 * 1 2 3 22 22 H 1.09003 * 109.46873 * 60.00063 * 1 2 3 23 23 H 1.09001 * 109.47055 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47335 * 240.00161 * 2 1 3 25 25 H 1.09004 * 109.47616 * 119.99953 * 2 1 3 26 26 H 1.08002 * 122.05958 * 359.72290 * 7 6 4 27 27 H 1.07995 * 124.58400 * 180.02562 * 8 7 6 28 28 H 1.08001 * 119.99388 * 179.97438 * 11 10 6 29 29 H 0.97000 * 119.99794 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2516 2.0575 -1.1751 5 9 2.0224 1.4092 -2.3380 6 6 2.7298 3.3962 -1.2001 7 6 3.0147 4.2048 -2.3122 8 6 3.4467 5.4285 -2.0423 9 16 3.5387 5.6899 -0.3096 10 6 2.9638 4.0578 0.0151 11 6 2.7340 3.4066 1.2200 12 6 2.2659 2.0828 1.2249 13 6 2.0308 1.4183 2.4461 14 1 1.3084 0.6170 2.4945 15 6 2.7332 1.7970 3.5947 16 7 3.8195 2.5196 3.4892 17 14 2.1210 1.2714 5.2795 18 1 0.8817 0.4675 5.1272 19 1 3.1625 0.4539 5.9517 20 1 1.8318 2.4757 6.0989 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.8896 3.8514 -3.3251 27 1 3.7060 6.1654 -2.7880 28 1 2.9154 3.9185 2.1536 29 1 4.3064 2.7825 4.2859 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396330659.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:12 Heat of formation + Delta-G solvation = -40.195356 kcal Electronic energy + Delta-G solvation = -15807.358018 eV Core-core repulsion = 13120.645817 eV Total energy + Delta-G solvation = -2686.712201 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.69813 -40.03150 -37.21319 -35.35649 -33.48406 -30.70468 -29.95901 -27.21139 -24.78235 -23.69322 -22.60274 -20.60409 -19.71611 -18.43718 -17.44831 -16.78297 -16.60109 -16.45752 -15.78519 -15.09477 -14.87680 -14.72995 -14.16894 -13.94467 -13.75895 -13.57701 -13.09785 -12.99455 -12.82492 -12.54754 -12.29316 -12.00452 -11.79965 -11.57186 -11.48881 -11.23130 -10.90082 -10.11561 -9.20917 -8.78560 -8.39582 -6.41420 0.08511 0.69980 0.92668 1.32909 1.34678 1.42237 1.57375 1.74904 2.16681 2.57478 3.41688 3.67989 3.97962 4.26386 4.39163 4.44263 4.64435 4.76568 4.82770 4.89903 5.02684 5.13092 5.14577 5.24216 5.33510 5.44010 5.49278 5.68484 5.79897 5.95991 6.06149 6.44343 6.72432 6.76802 8.17260 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.020216 B = 0.009665 C = 0.006797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.680626 B = 2896.209229 C = 4118.701100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.063 4.063 3 C -0.203 4.203 4 C 0.138 3.862 5 F -0.151 7.151 6 C -0.255 4.255 7 C -0.090 4.090 8 C -0.240 4.240 9 S 0.024 5.976 10 C -0.085 4.085 11 C -0.188 4.188 12 C 0.119 3.881 13 C -0.446 4.446 14 H 0.101 0.899 15 C 0.034 3.966 16 N -0.803 5.803 17 Si 0.986 3.014 18 H -0.249 1.249 19 H -0.265 1.265 20 H -0.267 1.267 21 H 0.049 0.951 22 H 0.042 0.958 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.143 0.857 27 H 0.188 0.812 28 H 0.110 0.890 29 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.575 -0.362 -2.116 3.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.101 4.101 3 C -0.205 4.205 4 C 0.117 3.883 5 F -0.130 7.130 6 C -0.262 4.262 7 C -0.119 4.119 8 C -0.373 4.373 9 S 0.284 5.716 10 C -0.200 4.200 11 C -0.215 4.215 12 C 0.113 3.887 13 C -0.474 4.474 14 H 0.119 0.881 15 C -0.185 4.185 16 N -0.427 5.427 17 Si 0.806 3.194 18 H -0.172 1.172 19 H -0.190 1.190 20 H -0.192 1.192 21 H 0.068 0.932 22 H 0.061 0.939 23 H 0.095 0.905 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.161 0.839 27 H 0.205 0.795 28 H 0.128 0.872 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.935 0.979 -1.270 2.513 hybrid contribution -0.254 -1.169 -0.410 1.264 sum -2.189 -0.189 -1.680 2.766 Atomic orbital electron populations 1.21638 0.94274 1.02055 1.01135 1.20203 0.96630 0.91286 1.01931 1.19752 1.10974 0.98414 0.91386 1.17078 1.01222 0.89398 0.80582 1.91326 1.92568 1.81273 1.47830 1.18016 1.18811 0.95720 0.93615 1.19836 1.00101 0.93509 0.98464 1.24985 1.13454 1.01314 0.97531 1.83551 1.73179 1.11805 1.03056 1.22446 1.03422 0.97407 0.96705 1.20556 1.11475 0.95302 0.94175 1.17428 0.88585 0.90458 0.92226 1.19967 1.19212 1.15898 0.92351 0.88062 1.26942 0.93026 0.93019 1.05505 1.69914 1.12050 1.26759 1.33949 0.85070 0.79835 0.79173 0.75307 1.17157 1.18997 1.19179 0.93191 0.93902 0.90513 0.92182 0.90755 0.83893 0.79464 0.87197 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 9.86 71.98 0.71 -3.77 15 2 C -0.06 -2.47 5.22 29.85 0.16 -2.31 15 3 C -0.20 -9.52 5.14 -19.79 -0.10 -9.62 15 4 C 0.14 6.50 7.25 22.60 0.16 6.66 15 5 F -0.15 -6.51 16.24 44.97 0.73 -5.78 15 6 C -0.26 -12.01 5.89 -21.26 -0.13 -12.14 15 7 C -0.09 -3.57 10.04 21.65 0.22 -3.35 15 8 C -0.24 -8.57 11.09 66.67 0.74 -7.83 15 9 S 0.02 0.99 23.29 -56.49 -1.32 -0.33 15 10 C -0.08 -4.14 6.46 22.93 0.15 -4.00 15 11 C -0.19 -9.84 8.70 22.95 0.20 -9.64 15 12 C 0.12 6.06 5.55 -21.35 -0.12 5.94 15 13 C -0.45 -21.36 8.08 23.34 0.19 -21.17 15 14 H 0.10 4.49 6.54 -2.91 -0.02 4.47 15 15 C 0.03 1.53 5.14 85.22 0.44 1.96 15 16 N -0.80 -39.06 11.00 21.81 0.24 -38.82 15 17 Si 0.99 34.23 29.59 68.60 2.03 36.26 15 18 H -0.25 -8.24 7.11 99.48 0.71 -7.53 15 19 H -0.27 -8.90 7.11 99.48 0.71 -8.19 15 20 H -0.27 -9.13 7.11 99.48 0.71 -8.42 15 21 H 0.05 1.74 7.84 -2.39 -0.02 1.72 15 22 H 0.04 1.44 8.14 -2.39 -0.02 1.42 15 23 H 0.08 2.07 8.14 -2.39 -0.02 2.05 15 24 H 0.06 2.21 7.56 -2.39 -0.02 2.19 15 25 H 0.07 2.89 6.76 -2.39 -0.02 2.88 15 26 H 0.14 4.93 8.06 -2.91 -0.02 4.91 15 27 H 0.19 5.07 8.06 -2.91 -0.02 5.05 15 28 H 0.11 5.96 6.22 -2.91 -0.02 5.94 15 29 H 0.29 12.87 8.30 -92.71 -0.77 12.10 15 Total: -1.00 -54.83 265.49 5.48 -49.35 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 1.18 Total: 18.59 kcal Atomic # 6 Polarization: -61.88 SS G_CDS: 2.62 Total: -59.26 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.24 Total: -38.82 kcal Atomic # 9 Polarization: -6.51 SS G_CDS: 0.73 Total: -5.78 kcal Atomic # 14 Polarization: 34.23 SS G_CDS: 2.03 Total: 36.26 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -1.32 Total: -0.33 kcal Total: -54.83 5.48 -49.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396330659.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.156 kcal (2) G-P(sol) polarization free energy of solvation -54.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds