Wall clock time and date at job start Mon Mar 30 2020 05:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35709 * 117.00052 * 2 1 4 4 C 1.32416 * 124.29168 * 179.72052 * 3 2 1 5 5 C 1.45525 * 114.75434 * 179.84503 * 4 3 2 6 6 C 1.40632 * 129.07805 * 180.15779 * 5 4 3 7 7 C 1.39971 * 120.08649 * 180.28809 * 6 5 4 8 8 C 1.41250 * 120.04593 * 180.02562 * 7 6 5 9 9 H 1.07996 * 119.99662 * 154.50446 * 8 7 6 10 10 C 1.39829 * 120.00097 * 334.50224 * 8 7 6 11 11 N 1.30914 * 119.99992 * 342.44677 * 10 8 7 12 12 Si 1.86796 * 119.99848 * 162.44028 * 10 8 7 13 13 H 1.48498 * 109.47017 * 94.85266 * 12 10 8 14 14 H 1.48506 * 109.47277 * 214.85114 * 12 10 8 15 15 H 1.48501 * 109.47389 * 334.85106 * 12 10 8 16 16 C 1.41079 * 119.90626 * 0.02562 * 7 6 5 17 17 C 1.36172 * 120.05540 * 359.97438 * 16 7 6 18 18 O 1.35915 * 119.62727 * 180.02562 * 17 16 7 19 19 C 1.40053 * 111.85492 * 0.43173 * 5 4 3 20 20 S 1.75253 * 124.29090 * 0.02562 * 3 2 1 21 21 H 1.08998 * 109.46953 * 59.99607 * 1 2 3 22 22 H 1.08995 * 109.47325 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47219 * 300.00092 * 1 2 3 24 24 H 1.07992 * 122.62145 * 0.02562 * 4 3 2 25 25 H 1.08002 * 119.95593 * 0.29112 * 6 5 4 26 26 H 0.97001 * 119.99559 * 180.02562 * 11 10 8 27 27 H 1.08006 * 119.96855 * 180.02562 * 16 7 6 28 28 H 0.96701 * 114.00209 * 269.98495 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.3586 1.3772 0.0053 5 6 3.7953 2.7654 0.0006 6 6 5.1027 3.2834 0.0012 7 6 5.3090 4.6679 0.0021 8 6 6.6225 5.1872 0.0021 9 1 6.8141 6.1711 -0.3999 10 6 7.6747 4.4275 0.5226 11 7 7.4221 3.4105 1.3073 12 14 9.4407 4.8637 0.0982 13 1 10.0058 5.7314 1.1626 14 1 10.2462 3.6205 -0.0066 15 1 9.4742 5.5860 -1.1990 16 6 4.2030 5.5438 0.0029 17 6 2.9366 5.0432 0.0023 18 8 1.8775 5.8950 0.0026 19 6 2.7118 3.6528 0.0010 20 16 1.2033 2.7463 0.0006 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 4.0515 0.5489 0.0098 25 1 5.9488 2.6121 0.0009 26 1 8.1521 2.8838 1.6687 27 1 4.3610 6.6122 0.0032 28 1 1.5706 6.1408 0.8861 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396373407.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:41 Heat of formation + Delta-G solvation = -44.809979 kcal Electronic energy + Delta-G solvation = -15379.642179 eV Core-core repulsion = 12680.357083 eV Total energy + Delta-G solvation = -2699.285096 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.79384 -38.33103 -36.16833 -34.51237 -32.41352 -29.03038 -28.21859 -26.55597 -25.47412 -22.20778 -21.37103 -19.96533 -18.26618 -17.51789 -16.15448 -15.65454 -15.55497 -15.35710 -15.29540 -14.16802 -13.79881 -13.45702 -12.99249 -12.46221 -12.28071 -12.03257 -11.69171 -11.45892 -11.18530 -11.11659 -10.75173 -10.37837 -10.32205 -9.91925 -9.63651 -9.55006 -8.97826 -8.29245 -7.30656 -6.91327 -6.71299 -4.49611 1.85594 2.06384 2.48709 2.78490 2.96519 3.01539 3.07545 3.33316 3.58450 3.83063 4.40219 5.04132 5.19753 5.24095 5.48364 5.50217 6.01108 6.19034 6.40856 6.53251 6.76563 6.98324 7.03013 7.13427 7.30925 7.36663 7.60981 7.76333 7.94396 8.31276 8.49678 8.68772 8.73436 10.02774 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.030876 B = 0.006665 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.646164 B = 4200.148660 C = 5018.597407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.292 6.292 3 C 0.021 3.979 4 C -0.162 4.162 5 C -0.015 4.015 6 C -0.150 4.150 7 C 0.121 3.879 8 C -0.451 4.451 9 H 0.083 0.917 10 C 0.075 3.925 11 N -0.783 5.783 12 Si 0.911 3.089 13 H -0.269 1.269 14 H -0.274 1.274 15 H -0.259 1.259 16 C -0.208 4.208 17 C 0.154 3.846 18 O -0.508 6.508 19 C -0.261 4.261 20 S 0.000 6.000 21 H 0.056 0.944 22 H 0.100 0.900 23 H 0.055 0.945 24 H 0.137 0.863 25 H 0.127 0.873 26 H 0.284 0.716 27 H 0.111 0.889 28 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.698 -2.837 -0.036 7.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.207 6.207 3 C -0.137 4.137 4 C -0.193 4.193 5 C -0.020 4.020 6 C -0.172 4.172 7 C 0.117 3.883 8 C -0.481 4.481 9 H 0.101 0.899 10 C -0.145 4.145 11 N -0.408 5.408 12 Si 0.735 3.265 13 H -0.194 1.194 14 H -0.199 1.199 15 H -0.182 1.182 16 C -0.229 4.229 17 C 0.106 3.894 18 O -0.317 6.317 19 C -0.375 4.375 20 S 0.254 5.746 21 H 0.074 0.926 22 H 0.118 0.882 23 H 0.074 0.926 24 H 0.154 0.846 25 H 0.145 0.855 26 H 0.095 0.905 27 H 0.129 0.871 28 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -7.923 -2.919 -0.506 8.459 hybrid contribution 1.899 -0.143 0.491 1.966 sum -6.025 -3.062 -0.014 6.758 Atomic orbital electron populations 1.23097 0.78667 1.03690 1.01772 1.85915 1.20660 1.23848 1.90259 1.22585 0.95204 0.87797 1.08099 1.20422 0.92347 0.96918 1.09593 1.18583 0.93809 0.89046 1.00562 1.21155 0.92717 0.95490 1.07869 1.17247 0.92294 0.90871 0.87852 1.19551 0.91155 1.02766 1.34585 0.89855 1.25951 1.02061 0.93922 0.92546 1.69854 1.35181 1.14811 1.20919 0.86242 0.80894 0.79127 0.80231 1.19441 1.19861 1.18249 1.20973 0.90937 0.99134 1.11841 1.17159 0.86119 0.84752 1.01363 1.84788 1.49090 1.65338 1.32487 1.21938 0.93384 0.95824 1.26387 1.83430 1.10035 0.95871 1.85245 0.92586 0.88171 0.92627 0.84556 0.85539 0.90488 0.87131 0.77233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.23 101.05 1.03 1.34 15 2 O -0.29 -5.07 10.56 -18.83 -0.20 -5.27 15 3 C 0.02 0.42 7.10 28.81 0.20 0.62 15 4 C -0.16 -3.53 10.41 -38.60 -0.40 -3.93 15 5 C -0.01 -0.35 6.02 -105.41 -0.64 -0.99 15 6 C -0.15 -3.86 8.75 -38.03 -0.33 -4.19 15 7 C 0.12 3.12 5.55 -107.03 -0.59 2.53 15 8 C -0.45 -11.38 9.03 -37.84 -0.34 -11.72 15 9 H 0.08 2.00 7.90 -52.49 -0.41 1.58 15 10 C 0.07 1.78 5.12 -17.35 -0.09 1.69 15 11 N -0.78 -19.38 10.99 55.54 0.61 -18.77 15 12 Si 0.91 17.78 29.59 -169.99 -5.03 12.75 15 13 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 14 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 15 H -0.26 -5.03 7.11 56.52 0.40 -4.63 15 16 C -0.21 -4.98 9.62 -39.25 -0.38 -5.35 15 17 C 0.15 3.54 6.67 -39.34 -0.26 3.28 15 18 O -0.51 -10.09 13.45 -19.47 -0.26 -10.35 15 19 C -0.26 -6.09 6.45 -37.92 -0.24 -6.34 15 20 S 0.00 -0.01 21.82 -107.50 -2.35 -2.36 15 21 H 0.06 0.67 8.01 -51.93 -0.42 0.25 15 22 H 0.10 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.06 0.66 8.01 -51.93 -0.42 0.24 15 24 H 0.14 2.76 8.06 -52.49 -0.42 2.34 15 25 H 0.13 3.32 6.17 -52.49 -0.32 3.00 15 26 H 0.28 6.37 8.30 -40.82 -0.34 6.03 15 27 H 0.11 2.46 8.06 -52.48 -0.42 2.04 15 28 H 0.37 5.63 9.06 45.56 0.41 6.04 15 LS Contribution 264.40 15.07 3.98 3.98 Total: -1.00 -28.47 264.40 -6.84 -35.31 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -1.56 Total: 7.77 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: -2.04 Total: -23.07 kcal Atomic # 7 Polarization: -19.38 SS G_CDS: 0.61 Total: -18.77 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.46 Total: -15.62 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -2.35 Total: -2.36 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.47 -6.84 -35.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396373407.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.500 kcal (2) G-P(sol) polarization free energy of solvation -28.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds