Wall clock time and date at job start Mon Mar 30 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35709 * 117.00052 * 2 1 4 4 C 1.32416 * 124.29168 * 179.72052 * 3 2 1 5 5 C 1.45525 * 114.75434 * 179.84503 * 4 3 2 6 6 C 1.40632 * 129.07805 * 180.15779 * 5 4 3 7 7 C 1.39971 * 120.08649 * 180.28809 * 6 5 4 8 8 C 1.41250 * 120.04593 * 180.02562 * 7 6 5 9 9 H 1.07996 * 119.99662 * 154.50446 * 8 7 6 10 10 C 1.39829 * 120.00097 * 334.50224 * 8 7 6 11 11 N 1.30914 * 119.99992 * 342.44677 * 10 8 7 12 12 Si 1.86796 * 119.99848 * 162.44028 * 10 8 7 13 13 H 1.48498 * 109.47017 * 94.85266 * 12 10 8 14 14 H 1.48506 * 109.47277 * 214.85114 * 12 10 8 15 15 H 1.48501 * 109.47389 * 334.85106 * 12 10 8 16 16 C 1.41079 * 119.90626 * 0.02562 * 7 6 5 17 17 C 1.36172 * 120.05540 * 359.97438 * 16 7 6 18 18 O 1.35915 * 119.62727 * 180.02562 * 17 16 7 19 19 C 1.40053 * 111.85492 * 0.43173 * 5 4 3 20 20 S 1.75253 * 124.29090 * 0.02562 * 3 2 1 21 21 H 1.08998 * 109.46953 * 59.99607 * 1 2 3 22 22 H 1.08995 * 109.47325 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47219 * 300.00092 * 1 2 3 24 24 H 1.07992 * 122.62145 * 0.02562 * 4 3 2 25 25 H 1.08002 * 119.95593 * 0.29112 * 6 5 4 26 26 H 0.97001 * 119.99559 * 180.02562 * 11 10 8 27 27 H 1.08006 * 119.96855 * 180.02562 * 16 7 6 28 28 H 0.96701 * 114.00209 * 269.98495 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.3586 1.3772 0.0053 5 6 3.7953 2.7654 0.0006 6 6 5.1027 3.2834 0.0012 7 6 5.3090 4.6679 0.0021 8 6 6.6225 5.1872 0.0021 9 1 6.8141 6.1711 -0.3999 10 6 7.6747 4.4275 0.5226 11 7 7.4221 3.4105 1.3073 12 14 9.4407 4.8637 0.0982 13 1 10.0058 5.7314 1.1626 14 1 10.2462 3.6205 -0.0066 15 1 9.4742 5.5860 -1.1990 16 6 4.2030 5.5438 0.0029 17 6 2.9366 5.0432 0.0023 18 8 1.8775 5.8950 0.0026 19 6 2.7118 3.6528 0.0010 20 16 1.2033 2.7463 0.0006 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 4.0515 0.5489 0.0098 25 1 5.9488 2.6121 0.0009 26 1 8.1521 2.8838 1.6687 27 1 4.3610 6.6122 0.0032 28 1 1.5706 6.1408 0.8861 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396373407.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:40 Heat of formation + Delta-G solvation = -63.343230 kcal Electronic energy + Delta-G solvation = -15380.445841 eV Core-core repulsion = 12680.357083 eV Total energy + Delta-G solvation = -2700.088758 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.42512 -39.86293 -37.84171 -36.26492 -34.16605 -30.75348 -29.87652 -27.88118 -27.24696 -23.89773 -23.12140 -21.69262 -19.87439 -19.19496 -17.84849 -17.29497 -17.04964 -16.88710 -16.83234 -15.82120 -15.45606 -15.11117 -14.61905 -14.12765 -13.87592 -13.37096 -13.25827 -13.05749 -12.79624 -12.59314 -12.40080 -12.07641 -11.96769 -11.63713 -11.33464 -11.26196 -10.70886 -10.02275 -9.05712 -8.69307 -8.42643 -6.38735 0.12502 0.45179 0.69086 1.07807 1.37814 1.41911 1.55522 1.62082 2.19374 2.23057 2.60351 3.35666 3.64061 4.26367 4.27484 4.28777 4.52871 4.59865 4.69483 4.87207 4.92400 5.18648 5.24459 5.43503 5.48252 5.74199 5.91584 5.99255 6.08088 6.50592 6.77138 6.81674 6.99406 8.26555 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.030876 B = 0.006665 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.646164 B = 4200.148660 C = 5018.597407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.297 6.297 3 C 0.042 3.958 4 C -0.203 4.203 5 C -0.021 4.021 6 C -0.183 4.183 7 C 0.100 3.900 8 C -0.483 4.483 9 H 0.086 0.914 10 C 0.036 3.964 11 N -0.814 5.814 12 Si 0.985 3.015 13 H -0.260 1.260 14 H -0.267 1.267 15 H -0.257 1.257 16 C -0.226 4.226 17 C 0.162 3.838 18 O -0.506 6.506 19 C -0.293 4.293 20 S 0.063 5.937 21 H 0.064 0.936 22 H 0.139 0.861 23 H 0.064 0.936 24 H 0.141 0.859 25 H 0.109 0.891 26 H 0.292 0.708 27 H 0.120 0.880 28 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.066 -3.165 -0.093 8.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.212 6.212 3 C -0.117 4.117 4 C -0.234 4.234 5 C -0.027 4.027 6 C -0.206 4.206 7 C 0.096 3.904 8 C -0.512 4.512 9 H 0.104 0.896 10 C -0.181 4.181 11 N -0.439 5.439 12 Si 0.805 3.195 13 H -0.185 1.185 14 H -0.191 1.191 15 H -0.181 1.181 16 C -0.248 4.248 17 C 0.114 3.886 18 O -0.318 6.318 19 C -0.407 4.407 20 S 0.318 5.682 21 H 0.083 0.917 22 H 0.157 0.843 23 H 0.083 0.917 24 H 0.158 0.842 25 H 0.127 0.873 26 H 0.102 0.898 27 H 0.138 0.862 28 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -9.335 -3.244 -0.544 9.898 hybrid contribution 2.039 -0.127 0.532 2.111 sum -7.296 -3.371 -0.012 8.037 Atomic orbital electron populations 1.23569 0.75660 1.06703 1.02574 1.85940 1.23579 1.22272 1.89412 1.22740 0.95041 0.89117 1.04771 1.20404 0.93650 0.96121 1.13177 1.18833 0.93696 0.90617 0.99564 1.21052 0.93101 0.95489 1.10924 1.17564 0.93313 0.91339 0.88186 1.19840 0.91941 1.03515 1.35901 0.89559 1.26817 1.06076 0.93463 0.91728 1.69916 1.36807 1.15688 1.21515 0.85139 0.75297 0.79043 0.79985 1.18465 1.19140 1.18063 1.21115 0.91271 0.99469 1.12906 1.17156 0.86466 0.85193 0.99768 1.84707 1.47902 1.64607 1.34564 1.22340 0.95603 0.96370 1.26387 1.83051 1.06770 0.94115 1.84300 0.91744 0.84291 0.91709 0.84177 0.87329 0.89767 0.86206 0.74409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 10.23 113.37 1.16 1.37 15 2 O -0.30 -9.54 10.56 -90.30 -0.95 -10.49 15 3 C 0.04 1.63 7.10 66.71 0.47 2.10 15 4 C -0.20 -8.91 10.41 23.04 0.24 -8.67 15 5 C -0.02 -1.06 6.02 -20.38 -0.12 -1.18 15 6 C -0.18 -9.90 8.75 23.27 0.20 -9.70 15 7 C 0.10 5.35 5.55 -21.42 -0.12 5.23 15 8 C -0.48 -25.21 9.03 23.40 0.21 -25.00 15 9 H 0.09 4.27 7.90 -2.91 -0.02 4.24 15 10 C 0.04 1.75 5.12 85.21 0.44 2.18 15 11 N -0.81 -41.66 10.99 21.81 0.24 -41.42 15 12 Si 0.99 36.80 29.59 68.60 2.03 38.83 15 13 H -0.26 -9.27 7.11 99.48 0.71 -8.57 15 14 H -0.27 -9.58 7.11 99.48 0.71 -8.87 15 15 H -0.26 -9.43 7.11 99.48 0.71 -8.72 15 16 C -0.23 -11.08 9.62 22.49 0.22 -10.87 15 17 C 0.16 7.41 6.67 22.43 0.15 7.56 15 18 O -0.51 -19.17 13.45 -92.59 -1.25 -20.41 15 19 C -0.29 -13.56 6.45 23.35 0.15 -13.41 15 20 S 0.06 2.32 21.82 -56.49 -1.23 1.08 15 21 H 0.06 1.28 8.01 -2.39 -0.02 1.26 15 22 H 0.14 1.89 8.14 -2.39 -0.02 1.87 15 23 H 0.06 1.28 8.01 -2.39 -0.02 1.26 15 24 H 0.14 5.85 8.06 -2.91 -0.02 5.83 15 25 H 0.11 6.09 6.17 -2.91 -0.02 6.07 15 26 H 0.29 13.42 8.30 -92.71 -0.77 12.65 15 27 H 0.12 5.43 8.06 -2.91 -0.02 5.41 15 28 H 0.40 11.03 9.06 -74.06 -0.67 10.35 15 Total: -1.00 -62.38 264.40 2.37 -60.00 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.53 Total: 22.78 kcal Atomic # 6 Polarization: -53.37 SS G_CDS: 3.00 Total: -50.37 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.24 Total: -41.42 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -2.20 Total: -30.90 kcal Atomic # 14 Polarization: 36.80 SS G_CDS: 2.03 Total: 38.83 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -1.23 Total: 1.08 kcal Total: -62.38 2.37 -60.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396373407.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.340 kcal (2) G-P(sol) polarization free energy of solvation -62.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds