Wall clock time and date at job start Mon Mar 30 2020 05:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35561 * 117.00050 * 2 1 4 4 C 1.33676 * 124.70992 * 179.97438 * 3 2 1 5 5 C 1.39767 * 115.67016 * 179.97438 * 4 3 2 6 6 C 1.39942 * 112.76028 * 0.02562 * 5 4 3 7 7 C 1.39261 * 120.09974 * 180.02562 * 6 5 4 8 8 C 1.38864 * 121.44055 * 359.97081 * 7 6 5 9 9 O 1.35919 * 119.50638 * 180.02562 * 8 7 6 10 10 C 1.37921 * 120.98541 * 0.02562 * 8 7 6 11 11 C 1.40300 * 120.07898 * 0.05783 * 10 8 7 12 12 C 1.40531 * 120.37440 * 179.97438 * 11 10 8 13 13 H 1.08005 * 120.00229 * 154.18825 * 12 11 10 14 14 C 1.39864 * 120.00127 * 334.18586 * 12 11 10 15 15 N 1.30922 * 120.00060 * 343.33768 * 14 12 11 16 16 Si 1.86800 * 120.00237 * 163.32956 * 14 12 11 17 17 H 1.48500 * 109.47082 * 89.99997 * 16 14 12 18 18 H 1.48501 * 109.47462 * 210.00523 * 16 14 12 19 19 H 1.48502 * 109.47333 * 330.00583 * 16 14 12 20 20 S 1.75506 * 124.70335 * 359.69868 * 3 2 1 21 21 H 1.09006 * 109.47084 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.47640 * 299.99577 * 1 2 3 23 23 H 1.09004 * 109.47595 * 60.00008 * 1 2 3 24 24 H 1.08003 * 122.16178 * 359.97438 * 4 3 2 25 25 H 1.08001 * 119.28446 * 180.02562 * 7 6 5 26 26 H 0.96699 * 113.99908 * 90.00188 * 9 8 7 27 27 H 1.08003 * 119.96118 * 180.02562 * 10 8 7 28 28 H 0.97000 * 119.99909 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0444 1.2078 0.0000 4 6 3.3691 1.3872 0.0005 5 6 3.8000 2.7167 -0.0002 6 6 2.7394 3.6297 -0.0007 7 6 2.9961 4.9984 -0.0019 8 6 4.2941 5.4920 -0.0020 9 8 4.4994 6.8356 -0.0027 10 6 5.3780 4.6392 -0.0015 11 6 5.1799 3.2502 -0.0020 12 6 6.2799 2.3756 -0.0020 13 1 6.1784 1.3802 0.4049 14 6 7.5060 2.7939 -0.5290 15 7 7.5600 3.8472 -1.3047 16 14 9.0668 1.8500 -0.1260 17 1 9.2769 0.7851 -1.1394 18 1 10.2246 2.7797 -0.1375 19 1 8.9396 1.2345 1.2195 20 16 1.2124 2.7532 -0.0076 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3635 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8900 24 1 4.0614 0.5583 0.0013 25 1 2.1676 5.6913 -0.0018 26 1 4.5587 7.2248 0.8805 27 1 6.3805 5.0410 -0.0012 28 1 8.4103 4.1371 -1.6704 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396373501.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:42 Heat of formation + Delta-G solvation = -63.008977 kcal Electronic energy + Delta-G solvation = -15448.091234 eV Core-core repulsion = 12748.016970 eV Total energy + Delta-G solvation = -2700.074264 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.31700 -39.64378 -37.94714 -36.09226 -33.97689 -31.69879 -29.35655 -27.97831 -26.66873 -24.28320 -22.96032 -21.45209 -20.14406 -18.84972 -18.32937 -17.11425 -16.89201 -16.72464 -16.47682 -16.13191 -15.38332 -15.15461 -14.63907 -14.01783 -13.84036 -13.40875 -13.30729 -13.01032 -12.85195 -12.54688 -12.44733 -12.16595 -12.01686 -11.64413 -11.26427 -11.03953 -10.77217 -10.08700 -8.90442 -8.80866 -8.45016 -6.39610 0.06513 0.51898 0.78022 0.94565 1.38416 1.47216 1.55210 1.65578 2.14851 2.38884 2.52601 3.38297 3.71715 4.30283 4.31582 4.33979 4.55596 4.66664 4.78241 4.96702 5.01271 5.05444 5.21486 5.40125 5.71179 5.83075 5.89157 6.00969 6.18583 6.38919 6.67513 6.71620 7.14391 8.12283 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.020753 B = 0.008298 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.902720 B = 3373.533293 C = 4632.981744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.300 6.300 3 C -0.027 4.027 4 C -0.138 4.138 5 C -0.186 4.186 6 C -0.095 4.095 7 C -0.259 4.259 8 C 0.150 3.850 9 O -0.512 6.512 10 C -0.237 4.237 11 C 0.131 3.869 12 C -0.453 4.453 13 H 0.089 0.911 14 C 0.034 3.966 15 N -0.797 5.797 16 Si 0.991 3.009 17 H -0.260 1.260 18 H -0.262 1.262 19 H -0.254 1.254 20 S 0.058 5.942 21 H 0.135 0.865 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.130 0.870 25 H 0.115 0.885 26 H 0.399 0.601 27 H 0.116 0.884 28 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.056 -3.174 3.356 7.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.216 6.216 3 C -0.185 4.185 4 C -0.168 4.168 5 C -0.192 4.192 6 C -0.210 4.210 7 C -0.285 4.285 8 C 0.103 3.897 9 O -0.324 6.324 10 C -0.259 4.259 11 C 0.126 3.874 12 C -0.480 4.480 13 H 0.107 0.893 14 C -0.185 4.185 15 N -0.420 5.420 16 Si 0.810 3.190 17 H -0.184 1.184 18 H -0.186 1.186 19 H -0.177 1.177 20 S 0.315 5.685 21 H 0.153 0.847 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.148 0.852 25 H 0.133 0.867 26 H 0.257 0.743 27 H 0.134 0.866 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.351 -2.961 2.580 8.334 hybrid contribution 1.892 -0.265 0.394 1.950 sum -5.459 -3.226 2.974 7.004 Atomic orbital electron populations 1.23464 0.76253 1.06275 1.02120 1.85825 1.22949 1.22377 1.90416 1.22627 0.94394 0.88170 1.13352 1.19142 0.92903 0.96736 1.07994 1.19009 0.93661 0.91295 1.15276 1.22044 0.94941 0.97207 1.06760 1.19769 0.95767 0.91932 1.21012 1.18044 0.91580 0.82288 0.97773 1.84698 1.94872 1.18325 1.34537 1.21162 0.97828 0.92804 1.14118 1.18564 0.89605 0.92283 0.86926 1.19835 0.94505 1.00860 1.32821 0.89293 1.26988 1.04096 0.95731 0.91656 1.69922 1.30116 1.21993 1.20003 0.85055 0.75065 0.78575 0.80278 1.18403 1.18581 1.17715 1.83133 1.06845 0.96005 1.82519 0.84696 0.92016 0.92250 0.85181 0.86698 0.74343 0.86604 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.33 10.24 113.37 1.16 1.49 15 2 O -0.30 -10.44 10.56 -88.67 -0.94 -11.38 15 3 C -0.03 -1.12 7.18 66.78 0.48 -0.64 15 4 C -0.14 -6.44 9.78 21.60 0.21 -6.22 15 5 C -0.19 -9.49 6.02 -19.92 -0.12 -9.61 15 6 C -0.09 -4.47 6.47 22.93 0.15 -4.32 15 7 C -0.26 -12.04 9.94 22.67 0.23 -11.81 15 8 C 0.15 7.19 6.66 22.34 0.15 7.34 15 9 O -0.51 -21.04 13.47 -92.64 -1.25 -22.28 15 10 C -0.24 -12.50 8.56 22.70 0.19 -12.31 15 11 C 0.13 7.08 5.75 -19.64 -0.11 6.97 15 12 C -0.45 -23.44 8.80 23.22 0.20 -23.23 15 13 H 0.09 4.40 7.52 -2.91 -0.02 4.38 15 14 C 0.03 1.64 5.15 85.22 0.44 2.08 15 15 N -0.80 -39.95 10.97 21.82 0.24 -39.71 15 16 Si 0.99 35.60 29.59 68.60 2.03 37.63 15 17 H -0.26 -9.03 7.11 99.48 0.71 -8.32 15 18 H -0.26 -8.87 7.11 99.48 0.71 -8.16 15 19 H -0.25 -8.91 7.11 99.48 0.71 -8.21 15 20 S 0.06 2.18 21.98 -56.49 -1.24 0.94 15 21 H 0.14 2.14 8.14 -2.38 -0.02 2.12 15 22 H 0.06 1.34 8.04 -2.38 -0.02 1.32 15 23 H 0.06 1.32 8.02 -2.38 -0.02 1.30 15 24 H 0.13 5.92 7.72 -2.91 -0.02 5.90 15 25 H 0.12 4.79 8.06 -2.91 -0.02 4.76 15 26 H 0.40 11.67 9.06 -74.06 -0.67 11.00 15 27 H 0.12 6.28 6.19 -2.91 -0.02 6.27 15 28 H 0.30 13.28 8.30 -92.71 -0.77 12.51 15 Total: -1.00 -62.55 263.49 2.36 -60.19 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.54 Total: 24.87 kcal Atomic # 6 Polarization: -53.24 SS G_CDS: 2.98 Total: -50.26 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.24 Total: -39.71 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -2.18 Total: -33.66 kcal Atomic # 14 Polarization: 35.60 SS G_CDS: 2.03 Total: 37.63 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -1.24 Total: 0.94 kcal Total: -62.55 2.36 -60.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396373501.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.820 kcal (2) G-P(sol) polarization free energy of solvation -62.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds