Wall clock time and date at job start Mon Mar 30 2020 05:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35731 * 116.99774 * 2 1 4 4 C 1.38935 * 119.32647 * 359.97438 * 3 2 1 5 5 C 1.37366 * 121.00033 * 179.72146 * 4 3 2 6 6 C 1.40429 * 120.18177 * 0.25285 * 5 4 3 7 7 C 1.40474 * 120.34303 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00135 * 154.46579 * 7 6 5 9 9 C 1.39830 * 119.99882 * 334.46283 * 7 6 5 10 10 N 1.30967 * 120.00223 * 342.60856 * 9 7 6 11 11 Si 1.86808 * 119.99878 * 162.60641 * 9 7 6 12 12 H 1.48497 * 109.46897 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46947 * 120.00105 * 11 9 7 14 14 H 1.48495 * 109.46923 * 240.00211 * 11 9 7 15 15 C 1.47990 * 119.31455 * 0.02562 * 6 5 4 16 16 C 1.39873 * 129.09185 * 180.02562 * 15 6 5 17 17 C 1.33554 * 115.65558 * 179.97438 * 16 15 6 18 18 O 1.35601 * 124.72350 * 179.97438 * 17 16 15 19 19 S 1.75505 * 110.54827 * 0.02562 * 17 16 15 20 20 C 1.39582 * 118.11005 * 359.97438 * 15 6 5 21 21 H 1.09009 * 109.47098 * 60.00099 * 1 2 3 22 22 H 1.08997 * 109.47324 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47601 * 300.00210 * 1 2 3 24 24 H 1.08000 * 119.50196 * 359.97438 * 4 3 2 25 25 H 1.07997 * 119.90571 * 180.27559 * 5 4 3 26 26 H 0.97000 * 120.00323 * 179.97438 * 10 9 7 27 27 H 1.08006 * 122.17221 * 359.97438 * 16 15 6 28 28 H 0.96698 * 113.99690 * 90.00384 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.2748 2.3656 -0.0005 5 6 1.8624 3.6072 0.0052 6 6 3.2616 3.7262 0.0063 7 6 3.8660 4.9942 0.0127 8 1 4.8600 5.1166 0.4169 9 6 3.1807 6.0980 -0.5043 10 7 2.1478 5.9186 -1.2893 11 14 3.7384 7.8285 -0.0753 12 1 4.9202 7.7596 0.8212 13 1 4.1027 8.5537 -1.3189 14 1 2.6360 8.5476 0.6123 15 6 4.0929 2.5018 0.0008 16 6 5.4864 2.3819 0.0012 17 6 5.9593 1.1329 -0.0042 18 8 7.2751 0.8051 -0.0052 19 16 4.6405 -0.0251 -0.0113 20 6 3.4437 1.2662 -0.0049 21 1 -0.3634 0.5139 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.1977 2.2870 -0.0014 25 1 1.2465 4.4944 0.0091 26 1 1.6721 6.6843 -1.6477 27 1 6.1378 3.2434 0.0057 28 1 7.6564 0.7061 0.8779 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396373533.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:56 Heat of formation + Delta-G solvation = -42.010132 kcal Electronic energy + Delta-G solvation = -15569.439297 eV Core-core repulsion = 12870.275612 eV Total energy + Delta-G solvation = -2699.163685 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.87353 -37.65232 -36.45436 -34.19136 -32.53655 -29.61794 -28.12231 -26.30974 -24.78409 -22.60437 -21.06911 -19.58086 -18.33499 -17.32812 -16.76785 -15.65450 -14.94713 -14.90049 -14.87495 -14.64724 -14.04053 -13.42544 -12.64224 -12.30664 -12.20254 -11.94783 -11.67557 -11.39137 -11.35981 -10.98995 -10.77665 -10.59281 -10.00375 -9.72978 -9.70998 -9.43435 -9.16763 -8.06993 -7.34062 -7.09738 -6.67832 -4.42058 1.65484 2.43431 2.58249 2.91994 2.96948 2.99912 3.02679 3.39536 3.70219 4.27066 4.30282 4.96680 5.32862 5.63357 5.69919 5.84674 6.01873 6.28655 6.37591 6.44416 6.72502 6.87164 6.88761 7.12169 7.23567 7.59582 7.67547 7.76612 8.03308 8.20615 8.36559 8.49424 8.67565 9.81599 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.019271 B = 0.009042 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.586148 B = 3095.770646 C = 4461.463863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.330 6.330 3 C 0.007 3.993 4 C -0.133 4.133 5 C -0.159 4.159 6 C 0.136 3.864 7 C -0.425 4.425 8 H 0.087 0.913 9 C 0.071 3.929 10 N -0.771 5.771 11 Si 0.917 3.083 12 H -0.256 1.256 13 H -0.271 1.271 14 H -0.268 1.268 15 C -0.164 4.164 16 C -0.076 4.076 17 C -0.065 4.065 18 O -0.457 6.457 19 S 0.010 5.990 20 C -0.084 4.084 21 H 0.044 0.956 22 H 0.083 0.917 23 H 0.043 0.957 24 H 0.106 0.894 25 H 0.127 0.873 26 H 0.287 0.713 27 H 0.132 0.868 28 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.512 -2.412 3.122 3.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.246 6.246 3 C -0.042 4.042 4 C -0.154 4.154 5 C -0.181 4.181 6 C 0.131 3.869 7 C -0.452 4.452 8 H 0.105 0.895 9 C -0.150 4.150 10 N -0.394 5.394 11 Si 0.740 3.260 12 H -0.180 1.180 13 H -0.196 1.196 14 H -0.193 1.193 15 C -0.170 4.170 16 C -0.108 4.108 17 C -0.223 4.223 18 O -0.264 6.264 19 S 0.269 5.731 20 C -0.200 4.200 21 H 0.063 0.937 22 H 0.101 0.899 23 H 0.062 0.938 24 H 0.124 0.876 25 H 0.145 0.855 26 H 0.099 0.901 27 H 0.150 0.850 28 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -0.589 -4.018 2.334 4.684 hybrid contribution 0.046 2.391 0.530 2.450 sum -0.543 -1.627 2.864 3.338 Atomic orbital electron populations 1.22729 0.80665 1.01896 1.00443 1.85858 1.19349 1.28117 1.91287 1.17479 0.88530 0.83687 1.14531 1.20682 0.97612 0.92451 1.04687 1.20871 0.94438 0.95588 1.07229 1.18404 0.90890 0.89893 0.87743 1.19574 1.02352 0.91495 1.31798 0.89490 1.26077 0.93992 1.02414 0.92541 1.69881 1.15482 1.34181 1.19845 0.86101 0.80145 0.80156 0.79606 1.17980 1.19577 1.19312 1.18542 0.91298 0.92180 1.14973 1.20123 0.94939 0.95968 0.99761 1.21778 0.86323 0.93697 1.20497 1.84836 1.18745 1.90457 1.32316 1.83733 0.96979 1.10195 1.82172 1.21222 0.93284 0.95147 1.10303 0.93738 0.89899 0.93808 0.87646 0.85508 0.90147 0.84986 0.77742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 9.79 101.05 0.99 1.60 15 2 O -0.33 -6.98 10.44 -18.90 -0.20 -7.17 15 3 C 0.01 0.17 6.72 -38.68 -0.26 -0.09 15 4 C -0.13 -3.01 8.94 -39.64 -0.35 -3.36 15 5 C -0.16 -3.90 8.64 -39.07 -0.34 -4.24 15 6 C 0.14 3.46 5.75 -104.23 -0.60 2.86 15 7 C -0.42 -10.38 8.80 -38.14 -0.34 -10.72 15 8 H 0.09 2.03 7.52 -52.49 -0.39 1.64 15 9 C 0.07 1.62 5.13 -17.32 -0.09 1.53 15 10 N -0.77 -18.20 10.99 55.54 0.61 -17.59 15 11 Si 0.92 16.99 29.59 -169.99 -5.03 11.96 15 12 H -0.26 -4.72 7.11 56.52 0.40 -4.32 15 13 H -0.27 -4.98 7.11 56.52 0.40 -4.58 15 14 H -0.27 -4.87 7.11 56.52 0.40 -4.47 15 15 C -0.16 -4.07 6.01 -104.79 -0.63 -4.70 15 16 C -0.08 -1.72 9.78 -40.61 -0.40 -2.12 15 17 C -0.06 -1.37 7.55 29.09 0.22 -1.15 15 18 O -0.46 -8.25 13.64 -18.50 -0.25 -8.50 15 19 S 0.01 0.22 23.25 -107.50 -2.50 -2.28 15 20 C -0.08 -2.04 6.41 -38.43 -0.25 -2.29 15 21 H 0.04 0.67 7.61 -51.92 -0.40 0.28 15 22 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 23 H 0.04 0.64 7.62 -51.93 -0.40 0.25 15 24 H 0.11 2.06 6.15 -52.49 -0.32 1.74 15 25 H 0.13 3.10 6.19 -52.49 -0.32 2.78 15 26 H 0.29 6.07 8.30 -40.82 -0.34 5.73 15 27 H 0.13 2.79 7.72 -52.48 -0.41 2.38 15 28 H 0.37 4.70 9.06 45.56 0.41 5.11 15 LS Contribution 261.07 15.07 3.93 3.93 Total: -1.00 -28.31 261.07 -6.86 -35.17 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -1.38 Total: 7.15 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -2.04 Total: -22.67 kcal Atomic # 7 Polarization: -18.20 SS G_CDS: 0.61 Total: -17.59 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.45 Total: -15.67 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.96 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -2.50 Total: -2.28 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.31 -6.86 -35.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396373533.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.842 kcal (2) G-P(sol) polarization free energy of solvation -28.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds