Wall clock time and date at job start Mon Mar 30 2020 05:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35731 * 116.99774 * 2 1 4 4 C 1.38935 * 119.32647 * 359.97438 * 3 2 1 5 5 C 1.37366 * 121.00033 * 179.72146 * 4 3 2 6 6 C 1.40429 * 120.18177 * 0.25285 * 5 4 3 7 7 C 1.40474 * 120.34303 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00135 * 154.46579 * 7 6 5 9 9 C 1.39830 * 119.99882 * 334.46283 * 7 6 5 10 10 N 1.30967 * 120.00223 * 342.60856 * 9 7 6 11 11 Si 1.86808 * 119.99878 * 162.60641 * 9 7 6 12 12 H 1.48497 * 109.46897 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46947 * 120.00105 * 11 9 7 14 14 H 1.48495 * 109.46923 * 240.00211 * 11 9 7 15 15 C 1.47990 * 119.31455 * 0.02562 * 6 5 4 16 16 C 1.39873 * 129.09185 * 180.02562 * 15 6 5 17 17 C 1.33554 * 115.65558 * 179.97438 * 16 15 6 18 18 O 1.35601 * 124.72350 * 179.97438 * 17 16 15 19 19 S 1.75505 * 110.54827 * 0.02562 * 17 16 15 20 20 C 1.39582 * 118.11005 * 359.97438 * 15 6 5 21 21 H 1.09009 * 109.47098 * 60.00099 * 1 2 3 22 22 H 1.08997 * 109.47324 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47601 * 300.00210 * 1 2 3 24 24 H 1.08000 * 119.50196 * 359.97438 * 4 3 2 25 25 H 1.07997 * 119.90571 * 180.27559 * 5 4 3 26 26 H 0.97000 * 120.00323 * 179.97438 * 10 9 7 27 27 H 1.08006 * 122.17221 * 359.97438 * 16 15 6 28 28 H 0.96698 * 113.99690 * 90.00384 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.2748 2.3656 -0.0005 5 6 1.8624 3.6072 0.0052 6 6 3.2616 3.7262 0.0063 7 6 3.8660 4.9942 0.0127 8 1 4.8600 5.1166 0.4169 9 6 3.1807 6.0980 -0.5043 10 7 2.1478 5.9186 -1.2893 11 14 3.7384 7.8285 -0.0753 12 1 4.9202 7.7596 0.8212 13 1 4.1027 8.5537 -1.3189 14 1 2.6360 8.5476 0.6123 15 6 4.0929 2.5018 0.0008 16 6 5.4864 2.3819 0.0012 17 6 5.9593 1.1329 -0.0042 18 8 7.2751 0.8051 -0.0052 19 16 4.6405 -0.0251 -0.0113 20 6 3.4437 1.2662 -0.0049 21 1 -0.3634 0.5139 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.1977 2.2870 -0.0014 25 1 1.2465 4.4944 0.0091 26 1 1.6721 6.6843 -1.6477 27 1 6.1378 3.2434 0.0057 28 1 7.6564 0.7061 0.8779 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396373533.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:55 Heat of formation + Delta-G solvation = -60.323290 kcal Electronic energy + Delta-G solvation = -15570.233415 eV Core-core repulsion = 12870.275612 eV Total energy + Delta-G solvation = -2699.957803 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.55822 -39.25233 -38.08266 -35.90920 -34.25182 -31.35324 -29.78712 -27.79747 -26.49815 -24.34314 -22.79103 -21.29418 -20.01472 -19.03550 -18.37351 -17.30601 -16.64174 -16.51434 -16.38871 -16.26847 -15.62630 -15.03409 -14.24440 -13.98389 -13.87427 -13.58779 -13.33903 -13.06664 -12.84201 -12.48426 -12.29863 -12.12231 -11.69362 -11.44680 -11.38222 -11.10412 -10.87002 -9.80680 -9.09646 -8.80678 -8.43012 -6.22231 -0.07959 0.70844 0.84230 1.24097 1.40429 1.47622 1.56189 1.64125 2.16714 2.56420 2.77766 3.43545 3.51098 4.23671 4.42476 4.48675 4.58840 4.64958 4.73520 4.76911 4.98380 5.12618 5.14453 5.36920 5.52028 5.84106 5.87884 5.95250 6.41837 6.64432 6.70021 6.71780 6.94211 8.15831 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.019271 B = 0.009042 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.586148 B = 3095.770646 C = 4461.463863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.345 6.345 3 C 0.005 3.995 4 C -0.136 4.136 5 C -0.179 4.179 6 C 0.105 3.895 7 C -0.454 4.454 8 H 0.087 0.913 9 C 0.035 3.965 10 N -0.802 5.802 11 Si 0.989 3.011 12 H -0.255 1.255 13 H -0.265 1.265 14 H -0.260 1.260 15 C -0.180 4.180 16 C -0.103 4.103 17 C -0.039 4.039 18 O -0.456 6.456 19 S 0.038 5.962 20 C -0.120 4.120 21 H 0.049 0.951 22 H 0.117 0.883 23 H 0.054 0.946 24 H 0.133 0.867 25 H 0.119 0.881 26 H 0.297 0.703 27 H 0.139 0.861 28 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.139 -2.774 3.448 4.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.261 6.261 3 C -0.045 4.045 4 C -0.157 4.157 5 C -0.201 4.201 6 C 0.100 3.900 7 C -0.482 4.482 8 H 0.105 0.895 9 C -0.183 4.183 10 N -0.426 5.426 11 Si 0.809 3.191 12 H -0.179 1.179 13 H -0.190 1.190 14 H -0.184 1.184 15 C -0.186 4.186 16 C -0.135 4.135 17 C -0.198 4.198 18 O -0.266 6.266 19 S 0.297 5.703 20 C -0.235 4.235 21 H 0.068 0.932 22 H 0.136 0.864 23 H 0.072 0.928 24 H 0.150 0.850 25 H 0.137 0.863 26 H 0.108 0.892 27 H 0.157 0.843 28 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -0.219 -4.411 2.677 5.164 hybrid contribution -0.020 2.279 0.425 2.319 sum -0.239 -2.132 3.102 3.771 Atomic orbital electron populations 1.23095 0.77882 1.04508 1.01165 1.85829 1.22234 1.26979 1.91075 1.17649 0.88706 0.84638 1.13518 1.20914 0.99035 0.91731 1.04055 1.20887 0.94352 0.96096 1.08791 1.18766 0.91653 0.90785 0.88793 1.19775 1.02901 0.92223 1.33293 0.89530 1.26895 0.93785 1.05878 0.91721 1.69907 1.16485 1.35780 1.20469 0.85035 0.79742 0.74980 0.79349 1.17870 1.18998 1.18422 1.18863 0.92437 0.92428 1.14913 1.20198 0.94376 0.96996 1.01910 1.21823 0.87455 0.93170 1.17361 1.84744 1.16933 1.90036 1.34937 1.83518 0.96094 1.09058 1.81635 1.21621 0.94543 0.96120 1.11257 0.93226 0.86444 0.92773 0.84973 0.86285 0.89228 0.84292 0.74182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 9.79 113.37 1.11 1.94 15 2 O -0.35 -14.15 10.44 -90.54 -0.95 -15.09 15 3 C 0.00 0.22 6.72 22.86 0.15 0.38 15 4 C -0.14 -6.20 8.94 22.23 0.20 -6.00 15 5 C -0.18 -9.03 8.64 22.60 0.20 -8.83 15 6 C 0.11 5.52 5.75 -19.61 -0.11 5.41 15 7 C -0.45 -22.85 8.80 23.20 0.20 -22.65 15 8 H 0.09 4.17 7.52 -2.91 -0.02 4.15 15 9 C 0.04 1.64 5.13 85.21 0.44 2.08 15 10 N -0.80 -38.60 10.99 21.81 0.24 -38.36 15 11 Si 0.99 34.77 29.59 68.60 2.03 36.80 15 12 H -0.26 -8.82 7.11 99.48 0.71 -8.11 15 13 H -0.27 -9.02 7.11 99.48 0.71 -8.31 15 14 H -0.26 -8.70 7.11 99.48 0.71 -8.00 15 15 C -0.18 -9.10 6.01 -19.97 -0.12 -9.22 15 16 C -0.10 -4.65 9.78 21.60 0.21 -4.44 15 17 C -0.04 -1.59 7.55 66.76 0.50 -1.09 15 18 O -0.46 -15.16 13.64 -89.11 -1.22 -16.37 15 19 S 0.04 1.59 23.25 -56.49 -1.31 0.27 15 20 C -0.12 -5.84 6.41 23.01 0.15 -5.70 15 21 H 0.05 1.40 7.61 -2.38 -0.02 1.38 15 22 H 0.12 2.60 8.14 -2.39 -0.02 2.58 15 23 H 0.05 1.47 7.62 -2.39 -0.02 1.45 15 24 H 0.13 5.08 6.15 -2.91 -0.02 5.07 15 25 H 0.12 6.04 6.19 -2.91 -0.02 6.02 15 26 H 0.30 12.64 8.30 -92.71 -0.77 11.87 15 27 H 0.14 5.91 7.72 -2.91 -0.02 5.88 15 28 H 0.40 8.75 9.06 -74.06 -0.67 8.08 15 Total: -1.00 -61.08 261.07 2.27 -58.81 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.54 Total: 22.07 kcal Atomic # 6 Polarization: -51.06 SS G_CDS: 2.93 Total: -48.14 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.24 Total: -38.36 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -2.16 Total: -31.47 kcal Atomic # 14 Polarization: 34.77 SS G_CDS: 2.03 Total: 36.80 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -1.31 Total: 0.27 kcal Total: -61.08 2.27 -58.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396373533.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.509 kcal (2) G-P(sol) polarization free energy of solvation -61.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds