Wall clock time and date at job start Mon Mar 30 2020 05:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35663 * 116.99873 * 2 1 4 4 C 1.38621 * 120.14607 * 359.97438 * 3 2 1 5 5 C 1.37445 * 120.65673 * 180.02562 * 4 3 2 6 6 C 1.41606 * 121.02925 * 0.02562 * 5 4 3 7 7 C 1.45483 * 128.97115 * 179.97438 * 6 5 4 8 8 C 1.32551 * 114.75366 * 180.02562 * 7 6 5 9 9 O 1.35765 * 124.38675 * 179.97438 * 8 7 6 10 10 S 1.75293 * 111.22893 * 0.02562 * 8 7 6 11 11 C 1.39231 * 119.11888 * 359.97438 * 6 5 4 12 12 C 1.41023 * 120.14776 * 179.73018 * 3 2 1 13 13 C 1.40796 * 120.12364 * 359.96818 * 12 3 2 14 14 H 1.07997 * 120.00248 * 38.70531 * 13 12 3 15 15 C 1.39829 * 120.00126 * 218.69534 * 13 12 3 16 16 N 1.30965 * 119.99671 * 20.97895 * 15 13 12 17 17 Si 1.86797 * 120.00341 * 200.97444 * 15 13 12 18 18 H 1.48504 * 109.46771 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47084 * 120.00213 * 17 15 13 20 20 H 1.48493 * 109.47511 * 240.00509 * 17 15 13 21 21 H 1.09002 * 109.46910 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47390 * 299.99986 * 1 2 3 23 23 H 1.08998 * 109.47439 * 60.00347 * 1 2 3 24 24 H 1.08001 * 119.67096 * 0.03347 * 4 3 2 25 25 H 1.07996 * 119.48488 * 180.02562 * 5 4 3 26 26 H 1.08005 * 122.62356 * 0.02693 * 7 6 5 27 27 H 0.96700 * 113.99785 * 90.00177 * 9 8 7 28 28 H 0.97005 * 119.99964 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2928 2.3733 -0.0005 5 6 1.9059 3.6034 -0.0011 6 6 3.3175 3.7155 -0.0016 7 6 4.1400 4.9155 -0.0027 8 6 5.4467 4.6927 -0.0036 9 8 6.3909 5.6683 -0.0052 10 16 5.7977 2.9753 -0.0038 11 6 4.0892 2.5567 -0.0011 12 6 3.4530 1.2863 0.0057 13 6 4.2254 0.1091 0.0122 14 1 3.9139 -0.7444 -0.5717 15 6 5.3959 0.0451 0.7744 16 7 5.5715 0.8711 1.7754 17 14 6.7093 -1.2186 0.3649 18 1 6.2724 -2.0259 -0.8024 19 1 7.9801 -0.5235 0.0378 20 1 6.9194 -2.1105 1.5334 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 0.2145 2.3133 -0.0004 25 1 1.3015 4.4985 -0.0011 26 1 3.7189 5.9101 -0.0029 27 1 6.6651 5.9517 0.8778 28 1 6.3833 0.8265 2.3044 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396373638.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:43 Heat of formation + Delta-G solvation = -60.545696 kcal Electronic energy + Delta-G solvation = -15837.361180 eV Core-core repulsion = 13137.393732 eV Total energy + Delta-G solvation = -2699.967448 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.53312 -39.22057 -37.99296 -35.79770 -33.91569 -31.87382 -28.88311 -27.85318 -27.04052 -23.80335 -23.02316 -21.29360 -19.96554 -18.72342 -18.43819 -17.20866 -16.82907 -16.58096 -16.21968 -16.00023 -15.51637 -14.75846 -14.47337 -14.04188 -13.92885 -13.56502 -13.33512 -12.92528 -12.78192 -12.49628 -12.23711 -12.14950 -11.92133 -11.35360 -11.24955 -10.88981 -10.54947 -10.01501 -8.78721 -8.69021 -8.01168 -6.29532 0.12407 0.80141 0.87935 1.33490 1.37671 1.49588 1.62383 1.69741 2.22445 2.70542 2.92073 3.34518 3.43105 4.25935 4.41797 4.46693 4.52927 4.59160 4.77949 4.85602 4.93628 5.03997 5.19733 5.41880 5.61532 5.69325 5.89357 6.15684 6.29890 6.59569 6.65609 6.84626 7.16451 8.32683 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.015488 B = 0.013698 C = 0.007559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.406435 B = 2043.620231 C = 3703.378141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.335 6.335 3 C 0.018 3.982 4 C -0.168 4.168 5 C -0.156 4.156 6 C -0.096 4.096 7 C -0.155 4.155 8 C -0.007 4.007 9 O -0.463 6.463 10 S 0.075 5.925 11 C -0.167 4.167 12 C 0.091 3.909 13 C -0.490 4.490 14 H 0.071 0.929 15 C 0.038 3.962 16 N -0.801 5.801 17 Si 0.954 3.046 18 H -0.262 1.262 19 H -0.261 1.261 20 H -0.263 1.263 21 H 0.111 0.889 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.142 0.858 25 H 0.136 0.864 26 H 0.159 0.841 27 H 0.406 0.594 28 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.872 3.902 -0.384 4.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.250 6.250 3 C -0.030 4.030 4 C -0.188 4.188 5 C -0.178 4.178 6 C -0.103 4.103 7 C -0.188 4.188 8 C -0.167 4.167 9 O -0.275 6.275 10 S 0.337 5.663 11 C -0.284 4.284 12 C 0.084 3.916 13 C -0.520 4.520 14 H 0.089 0.911 15 C -0.178 4.178 16 N -0.428 5.428 17 Si 0.776 3.224 18 H -0.185 1.185 19 H -0.185 1.185 20 H -0.188 1.188 21 H 0.129 0.871 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.159 0.841 25 H 0.154 0.846 26 H 0.177 0.823 27 H 0.264 0.736 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.269 2.984 -0.795 3.339 hybrid contribution -0.847 0.371 0.594 1.099 sum -2.116 3.355 -0.201 3.972 Atomic orbital electron populations 1.23143 0.78244 1.04395 1.01278 1.85935 1.21735 1.27402 1.89946 1.19168 0.91609 0.84320 1.07921 1.20874 0.99635 0.91599 1.06711 1.20455 0.91127 0.97182 1.08992 1.19061 0.94690 0.90993 1.05558 1.21446 0.92098 0.98977 1.06323 1.22655 0.90931 0.92987 1.10116 1.84724 1.56046 1.51569 1.35147 1.83964 1.06618 0.97362 1.78326 1.22245 0.94898 0.96179 1.15036 1.16513 0.89209 0.91710 0.94120 1.19268 1.06809 0.99649 1.26243 0.91093 1.26388 0.99727 0.98520 0.93115 1.69877 1.26710 1.34111 1.12114 0.85529 0.78332 0.78932 0.79630 1.18530 1.18516 1.18778 0.87089 0.92832 0.92433 0.84073 0.84649 0.82333 0.73621 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 9.81 113.37 1.11 1.86 15 2 O -0.34 -15.25 9.91 -89.79 -0.89 -16.14 15 3 C 0.02 0.89 6.71 23.04 0.15 1.04 15 4 C -0.17 -7.02 8.98 22.17 0.20 -6.82 15 5 C -0.16 -6.47 10.08 22.91 0.23 -6.24 15 6 C -0.10 -4.45 6.03 -20.34 -0.12 -4.57 15 7 C -0.16 -6.22 10.42 22.99 0.24 -5.98 15 8 C -0.01 -0.29 7.47 66.67 0.50 0.21 15 9 O -0.46 -15.16 13.64 -90.92 -1.24 -16.40 15 10 S 0.07 3.54 19.85 -56.49 -1.12 2.42 15 11 C -0.17 -8.68 5.73 23.46 0.13 -8.54 15 12 C 0.09 4.98 5.38 -21.02 -0.11 4.87 15 13 C -0.49 -27.33 8.43 23.28 0.20 -27.13 15 14 H 0.07 4.01 7.90 -2.91 -0.02 3.98 15 15 C 0.04 1.98 4.25 85.21 0.36 2.34 15 16 N -0.80 -42.00 10.70 21.81 0.23 -41.77 15 17 Si 0.95 39.88 29.61 68.60 2.03 41.91 15 18 H -0.26 -10.90 7.11 99.48 0.71 -10.19 15 19 H -0.26 -10.46 7.11 99.48 0.71 -9.75 15 20 H -0.26 -10.42 7.11 99.48 0.71 -9.71 15 21 H 0.11 2.73 8.14 -2.39 -0.02 2.71 15 22 H 0.05 1.51 7.66 -2.39 -0.02 1.49 15 23 H 0.06 1.56 7.66 -2.39 -0.02 1.54 15 24 H 0.14 4.70 6.27 -2.91 -0.02 4.68 15 25 H 0.14 4.53 8.06 -2.91 -0.02 4.51 15 26 H 0.16 5.20 8.06 -2.91 -0.02 5.17 15 27 H 0.41 8.94 9.06 -74.06 -0.67 8.27 15 28 H 0.29 13.85 8.30 -92.70 -0.77 13.08 15 Total: -1.00 -65.60 259.43 2.44 -63.16 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.54 Total: 15.79 kcal Atomic # 6 Polarization: -51.86 SS G_CDS: 2.89 Total: -48.97 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.23 Total: -41.77 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -2.13 Total: -32.54 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -1.12 Total: 2.42 kcal Total: -65.60 2.44 -63.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396373638.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.616 kcal (2) G-P(sol) polarization free energy of solvation -65.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds