Wall clock time and date at job start Mon Mar 30 2020 05:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35817 * 117.00187 * 2 1 4 4 C 1.37949 * 119.85857 * 359.97438 * 3 2 1 5 5 C 1.38962 * 120.14722 * 179.97438 * 4 3 2 6 6 O 1.35891 * 119.93895 * 180.02562 * 5 4 3 7 7 C 1.38237 * 120.12768 * 0.02562 * 5 4 3 8 8 C 1.39785 * 120.44396 * 0.02562 * 7 5 4 9 9 S 1.75802 * 130.11568 * 180.31675 * 8 7 5 10 10 C 1.69987 * 93.22644 * 180.02562 * 9 8 7 11 11 C 1.36490 * 111.93596 * 359.64573 * 10 9 8 12 12 C 1.40818 * 123.29268 * 180.24203 * 11 10 9 13 13 H 1.07998 * 119.99724 * 203.39838 * 12 11 10 14 14 C 1.39641 * 119.99868 * 23.40688 * 12 11 10 15 15 N 1.31110 * 120.00124 * 10.67179 * 14 12 11 16 16 Si 1.86797 * 120.00075 * 190.67468 * 14 12 11 17 17 H 1.48501 * 109.47289 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47250 * 119.99864 * 16 14 12 19 19 H 1.48500 * 109.47153 * 239.99915 * 16 14 12 20 20 C 1.39329 * 119.69917 * 359.97299 * 8 7 5 21 21 H 1.09004 * 109.46967 * 300.00180 * 1 2 3 22 22 H 1.09000 * 109.47005 * 60.00263 * 1 2 3 23 23 H 1.08998 * 109.46661 * 180.02562 * 1 2 3 24 24 H 1.08004 * 119.92502 * 359.97438 * 4 3 2 25 25 H 0.96700 * 113.99224 * 270.02241 * 6 5 4 26 26 H 1.07999 * 119.77607 * 179.97438 * 7 5 4 27 27 H 1.07991 * 124.03048 * 179.90646 * 10 9 8 28 28 H 0.97006 * 119.99923 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2101 0.0000 4 6 1.2915 2.3652 -0.0005 5 6 1.9162 3.6065 0.0000 6 8 1.1692 4.7417 0.0000 7 6 3.2961 3.6889 0.0005 8 6 4.0749 2.5281 0.0000 9 16 5.8224 2.3364 0.0079 10 6 5.7326 0.6390 0.0003 11 6 4.4413 0.1967 -0.0002 12 6 4.0914 -1.1673 -0.0010 13 1 3.1258 -1.4768 -0.3727 14 6 4.9929 -2.1196 0.4791 15 7 6.0711 -1.7373 1.1196 16 14 4.6626 -3.9382 0.2086 17 1 3.3882 -4.1046 -0.5353 18 1 5.7752 -4.5321 -0.5753 19 1 4.5616 -4.6236 1.5221 20 6 3.4545 1.2805 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 0.2132 2.3047 -0.0014 25 1 0.9531 5.0702 -0.8835 26 1 3.7757 4.6565 0.0005 27 1 6.5943 -0.0119 0.0004 28 1 6.6971 -2.3989 1.4534 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396374872.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:04 Heat of formation + Delta-G solvation = -46.146272 kcal Electronic energy + Delta-G solvation = -15772.215016 eV Core-core repulsion = 13072.871974 eV Total energy + Delta-G solvation = -2699.343042 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.68412 -37.79436 -36.39333 -34.22169 -31.77410 -29.49049 -27.99954 -26.74842 -25.56929 -22.35310 -21.59587 -19.66524 -18.61476 -16.79005 -16.51897 -15.88521 -15.29886 -15.18808 -14.84818 -14.45266 -14.18881 -13.46339 -12.94601 -12.50860 -12.05214 -11.89873 -11.40155 -11.20284 -11.08213 -10.90713 -10.88449 -10.39986 -10.28969 -10.03250 -9.68973 -9.32044 -9.08734 -8.08193 -7.36041 -6.60179 -6.52950 -4.22073 1.70008 1.93627 2.75317 2.99897 3.13921 3.20109 3.66532 3.72288 3.97316 4.07472 4.33681 4.66725 5.35172 5.38969 5.46984 5.48419 5.68037 5.78078 5.88673 6.13097 6.41964 6.72533 6.89550 6.95941 7.10484 7.32439 7.76212 7.86477 8.04200 8.16133 8.60103 8.88279 8.98764 10.37469 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.023053 B = 0.009189 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.287233 B = 3046.318471 C = 4196.811919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.289 6.289 3 C 0.188 3.812 4 C -0.268 4.268 5 C 0.129 3.871 6 O -0.500 6.500 7 C -0.156 4.156 8 C -0.103 4.103 9 S 0.058 5.942 10 C -0.363 4.363 11 C 0.091 3.909 12 C -0.421 4.421 13 H 0.086 0.914 14 C 0.065 3.935 15 N -0.804 5.804 16 Si 0.912 3.088 17 H -0.262 1.262 18 H -0.275 1.275 19 H -0.277 1.277 20 C -0.095 4.095 21 H 0.050 0.950 22 H 0.049 0.951 23 H 0.094 0.906 24 H 0.126 0.874 25 H 0.382 0.618 26 H 0.119 0.881 27 H 0.163 0.837 28 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.253 4.753 -3.155 9.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.201 6.201 3 C 0.140 3.860 4 C -0.291 4.291 5 C 0.083 3.917 6 O -0.309 6.309 7 C -0.180 4.180 8 C -0.219 4.219 9 S 0.322 5.678 10 C -0.499 4.499 11 C 0.083 3.917 12 C -0.454 4.454 13 H 0.104 0.896 14 C -0.149 4.149 15 N -0.431 5.431 16 Si 0.737 3.263 17 H -0.185 1.185 18 H -0.201 1.201 19 H -0.202 1.202 20 C -0.106 4.106 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.113 0.887 24 H 0.144 0.856 25 H 0.236 0.764 26 H 0.137 0.863 27 H 0.181 0.819 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.614 5.269 -2.406 8.066 hybrid contribution -1.559 -1.690 -0.427 2.338 sum -7.172 3.579 -2.832 8.501 Atomic orbital electron populations 1.23014 0.80172 1.03293 1.00682 1.86323 1.19639 1.26489 1.87676 1.18616 0.90266 0.83575 0.93569 1.20898 0.99560 0.91686 1.16930 1.17641 0.88515 0.84608 1.00976 1.84798 1.72426 1.40790 1.32932 1.20402 0.92130 0.96664 1.08836 1.22282 0.98933 0.95005 1.05697 1.81873 0.98697 1.07471 1.79755 1.24337 1.01665 0.93432 1.30430 1.17242 0.88308 0.92054 0.94124 1.19152 1.01549 0.89719 1.35003 0.89590 1.25803 0.94593 1.01316 0.93238 1.69896 1.10116 1.35675 1.27452 0.86194 0.79382 0.82012 0.78692 1.18527 1.20065 1.20234 1.19100 0.90500 0.94004 1.06994 0.93136 0.93248 0.88725 0.85613 0.76402 0.86263 0.81942 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.80 101.05 0.99 1.34 15 2 O -0.29 -5.99 8.41 -19.17 -0.16 -6.16 15 3 C 0.19 4.09 6.74 -38.62 -0.26 3.83 15 4 C -0.27 -4.97 8.95 -39.42 -0.35 -5.32 15 5 C 0.13 2.35 6.69 -39.31 -0.26 2.09 15 6 O -0.50 -7.48 13.50 -19.40 -0.26 -7.75 15 7 C -0.16 -3.05 10.00 -39.00 -0.39 -3.44 15 8 C -0.10 -2.34 6.43 -38.60 -0.25 -2.58 15 9 S 0.06 1.30 22.96 -107.50 -2.47 -1.17 15 10 C -0.36 -9.63 9.50 30.10 0.29 -9.34 15 11 C 0.09 2.49 5.68 -106.19 -0.60 1.88 15 12 C -0.42 -11.51 8.69 -38.08 -0.33 -11.84 15 13 H 0.09 2.30 6.37 -52.49 -0.33 1.96 15 14 C 0.07 1.70 5.36 -17.34 -0.09 1.61 15 15 N -0.80 -21.59 10.83 55.53 0.60 -20.99 15 16 Si 0.91 19.52 29.57 -169.99 -5.03 14.49 15 17 H -0.26 -5.51 7.11 56.52 0.40 -5.11 15 18 H -0.28 -5.78 7.11 56.52 0.40 -5.38 15 19 H -0.28 -5.84 7.11 56.52 0.40 -5.44 15 20 C -0.09 -2.34 6.04 -105.06 -0.63 -2.98 15 21 H 0.05 0.66 7.65 -51.93 -0.40 0.26 15 22 H 0.05 0.61 7.64 -51.93 -0.40 0.22 15 23 H 0.09 1.14 8.14 -51.93 -0.42 0.72 15 24 H 0.13 1.97 6.24 -52.48 -0.33 1.64 15 25 H 0.38 3.65 9.06 45.56 0.41 4.07 15 26 H 0.12 2.06 8.06 -52.49 -0.42 1.64 15 27 H 0.16 4.55 6.31 -52.49 -0.33 4.22 15 28 H 0.27 6.74 8.30 -40.82 -0.34 6.40 15 LS Contribution 258.25 15.07 3.89 3.89 Total: -1.00 -30.55 258.25 -6.68 -37.23 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -1.35 Total: 5.20 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: -1.90 Total: -24.76 kcal Atomic # 7 Polarization: -21.59 SS G_CDS: 0.60 Total: -20.99 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.42 Total: -13.90 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.47 Total: -1.17 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.55 -6.68 -37.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396374872.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.920 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds