Wall clock time and date at job start Mon Mar 30 2020 05:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35817 * 117.00187 * 2 1 4 4 C 1.37949 * 119.85857 * 359.97438 * 3 2 1 5 5 C 1.38962 * 120.14722 * 179.97438 * 4 3 2 6 6 O 1.35891 * 119.93895 * 180.02562 * 5 4 3 7 7 C 1.38237 * 120.12768 * 0.02562 * 5 4 3 8 8 C 1.39785 * 120.44396 * 0.02562 * 7 5 4 9 9 S 1.75802 * 130.11568 * 180.31675 * 8 7 5 10 10 C 1.69987 * 93.22644 * 180.02562 * 9 8 7 11 11 C 1.36490 * 111.93596 * 359.64573 * 10 9 8 12 12 C 1.40818 * 123.29268 * 180.24203 * 11 10 9 13 13 H 1.07998 * 119.99724 * 203.39838 * 12 11 10 14 14 C 1.39641 * 119.99868 * 23.40688 * 12 11 10 15 15 N 1.31110 * 120.00124 * 10.67179 * 14 12 11 16 16 Si 1.86797 * 120.00075 * 190.67468 * 14 12 11 17 17 H 1.48501 * 109.47289 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47250 * 119.99864 * 16 14 12 19 19 H 1.48500 * 109.47153 * 239.99915 * 16 14 12 20 20 C 1.39329 * 119.69917 * 359.97299 * 8 7 5 21 21 H 1.09004 * 109.46967 * 300.00180 * 1 2 3 22 22 H 1.09000 * 109.47005 * 60.00263 * 1 2 3 23 23 H 1.08998 * 109.46661 * 180.02562 * 1 2 3 24 24 H 1.08004 * 119.92502 * 359.97438 * 4 3 2 25 25 H 0.96700 * 113.99224 * 270.02241 * 6 5 4 26 26 H 1.07999 * 119.77607 * 179.97438 * 7 5 4 27 27 H 1.07991 * 124.03048 * 179.90646 * 10 9 8 28 28 H 0.97006 * 119.99923 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2101 0.0000 4 6 1.2915 2.3652 -0.0005 5 6 1.9162 3.6065 0.0000 6 8 1.1692 4.7417 0.0000 7 6 3.2961 3.6889 0.0005 8 6 4.0749 2.5281 0.0000 9 16 5.8224 2.3364 0.0079 10 6 5.7326 0.6390 0.0003 11 6 4.4413 0.1967 -0.0002 12 6 4.0914 -1.1673 -0.0010 13 1 3.1258 -1.4768 -0.3727 14 6 4.9929 -2.1196 0.4791 15 7 6.0711 -1.7373 1.1196 16 14 4.6626 -3.9382 0.2086 17 1 3.3882 -4.1046 -0.5353 18 1 5.7752 -4.5321 -0.5753 19 1 4.5616 -4.6236 1.5221 20 6 3.4545 1.2805 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 0.2132 2.3047 -0.0014 25 1 0.9531 5.0702 -0.8835 26 1 3.7757 4.6565 0.0005 27 1 6.5943 -0.0119 0.0004 28 1 6.6971 -2.3989 1.4534 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396374872.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:04 Heat of formation + Delta-G solvation = -67.235719 kcal Electronic energy + Delta-G solvation = -15773.129523 eV Core-core repulsion = 13072.871974 eV Total energy + Delta-G solvation = -2700.257549 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.20429 -39.16817 -38.01309 -35.97430 -33.56624 -31.04043 -29.52319 -28.37587 -27.27568 -24.00313 -23.14809 -21.48042 -20.03974 -18.61441 -17.99049 -17.56884 -16.83606 -16.58053 -16.54459 -16.00796 -15.62203 -14.93227 -14.64098 -14.14810 -13.66369 -13.46593 -13.17363 -12.83042 -12.69578 -12.59141 -12.28772 -12.01872 -11.92939 -11.58004 -11.37585 -11.15459 -10.90485 -9.75671 -9.08433 -8.53114 -8.29777 -6.23114 0.08015 0.36456 1.06098 1.27925 1.37513 1.53294 1.87804 1.93635 2.25627 2.53980 2.65969 3.31196 3.40001 4.00002 4.17109 4.29813 4.41757 4.43756 4.56680 4.73110 4.87656 5.13311 5.27672 5.33304 5.38555 5.63577 5.77334 6.04787 6.51867 6.63099 6.90212 6.92226 7.01110 8.45365 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.023053 B = 0.009189 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.287233 B = 3046.318471 C = 4196.811919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.321 6.321 3 C 0.178 3.822 4 C -0.256 4.256 5 C 0.157 3.843 6 O -0.495 6.495 7 C -0.166 4.166 8 C -0.109 4.109 9 S 0.084 5.916 10 C -0.400 4.400 11 C 0.067 3.933 12 C -0.452 4.452 13 H 0.083 0.917 14 C 0.020 3.980 15 N -0.837 5.837 16 Si 0.986 3.014 17 H -0.256 1.256 18 H -0.268 1.268 19 H -0.268 1.268 20 C -0.144 4.144 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.114 0.886 24 H 0.162 0.838 25 H 0.412 0.588 26 H 0.144 0.856 27 H 0.137 0.863 28 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.818 5.699 -3.452 11.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.234 6.234 3 C 0.130 3.870 4 C -0.279 4.279 5 C 0.109 3.891 6 O -0.309 6.309 7 C -0.191 4.191 8 C -0.225 4.225 9 S 0.348 5.652 10 C -0.536 4.536 11 C 0.058 3.942 12 C -0.485 4.485 13 H 0.101 0.899 14 C -0.191 4.191 15 N -0.465 5.465 16 Si 0.807 3.193 17 H -0.179 1.179 18 H -0.193 1.193 19 H -0.193 1.193 20 C -0.155 4.155 21 H 0.083 0.917 22 H 0.090 0.910 23 H 0.132 0.868 24 H 0.179 0.821 25 H 0.272 0.728 26 H 0.161 0.839 27 H 0.154 0.846 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.207 6.245 -2.725 10.667 hybrid contribution -0.966 -1.819 -0.343 2.089 sum -9.173 4.426 -3.068 10.637 Atomic orbital electron populations 1.23402 0.76977 1.05349 1.02385 1.86268 1.23011 1.26557 1.87561 1.18744 0.89597 0.85043 0.93657 1.21237 1.01121 0.90634 1.14870 1.17652 0.88179 0.85529 0.97714 1.84732 1.71463 1.39180 1.35484 1.20681 0.92869 0.96498 1.09062 1.22534 0.98794 0.95665 1.05520 1.81383 0.99312 1.04038 1.80486 1.24212 1.00952 0.95945 1.32497 1.17697 0.89480 0.93216 0.93760 1.19405 1.02009 0.90707 1.36359 0.89939 1.26745 0.94027 1.05986 0.92377 1.70001 1.11032 1.37407 1.28083 0.85095 0.79457 0.75860 0.78878 1.17934 1.19259 1.19337 1.19278 0.92095 0.93881 1.10209 0.91679 0.91019 0.86784 0.82088 0.72816 0.83851 0.84565 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.34 9.80 113.37 1.11 1.45 15 2 O -0.32 -13.10 8.41 -91.50 -0.77 -13.87 15 3 C 0.18 7.59 6.74 22.89 0.15 7.74 15 4 C -0.26 -8.65 8.95 22.37 0.20 -8.45 15 5 C 0.16 5.09 6.69 22.44 0.15 5.24 15 6 O -0.50 -12.16 13.50 -92.32 -1.25 -13.41 15 7 C -0.17 -6.11 10.00 22.64 0.23 -5.88 15 8 C -0.11 -4.94 6.43 22.91 0.15 -4.79 15 9 S 0.08 3.89 22.96 -56.49 -1.30 2.60 15 10 C -0.40 -22.49 9.50 67.41 0.64 -21.85 15 11 C 0.07 3.85 5.68 -20.88 -0.12 3.73 15 12 C -0.45 -25.75 8.69 23.24 0.20 -25.55 15 13 H 0.08 4.58 6.37 -2.91 -0.02 4.56 15 14 C 0.02 1.09 5.36 85.14 0.46 1.55 15 15 N -0.84 -46.98 10.83 21.79 0.24 -46.74 15 16 Si 0.99 40.86 29.57 68.60 2.03 42.89 15 17 H -0.26 -10.23 7.11 99.48 0.71 -9.52 15 18 H -0.27 -10.66 7.11 99.48 0.71 -9.96 15 19 H -0.27 -10.66 7.11 99.48 0.71 -9.96 15 20 C -0.14 -7.27 6.04 -20.15 -0.12 -7.39 15 21 H 0.06 1.49 7.65 -2.38 -0.02 1.47 15 22 H 0.07 1.53 7.64 -2.39 -0.02 1.51 15 23 H 0.11 2.46 8.14 -2.39 -0.02 2.44 15 24 H 0.16 4.22 6.24 -2.91 -0.02 4.20 15 25 H 0.41 5.45 9.06 -74.06 -0.67 4.78 15 26 H 0.14 4.49 8.06 -2.91 -0.02 4.47 15 27 H 0.14 8.21 6.31 -2.91 -0.02 8.19 15 28 H 0.28 14.32 8.30 -92.70 -0.77 13.55 15 Total: -1.00 -69.56 258.25 2.55 -67.02 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.55 Total: 15.73 kcal Atomic # 6 Polarization: -57.25 SS G_CDS: 3.05 Total: -54.20 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.24 Total: -46.74 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -2.02 Total: -27.28 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Atomic # 16 Polarization: 3.89 SS G_CDS: -1.30 Total: 2.60 kcal Total: -69.56 2.55 -67.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396374872.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.219 kcal (2) G-P(sol) polarization free energy of solvation -69.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds