Wall clock time and date at job start Mon Mar 30 2020 05:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36001 * 116.99760 * 2 1 4 4 C 1.38990 * 119.99153 * 0.34652 * 3 2 1 5 5 C 1.37401 * 120.25456 * 180.30421 * 4 3 2 6 6 C 1.40696 * 120.48575 * 359.65720 * 5 4 3 7 7 C 1.46638 * 129.43157 * 180.02562 * 6 5 4 8 8 C 1.40810 * 123.29924 * 359.96156 * 7 6 5 9 9 H 1.07997 * 119.99479 * 22.42589 * 8 7 6 10 10 C 1.39655 * 120.00083 * 202.41680 * 8 7 6 11 11 N 1.31112 * 120.00184 * 11.10588 * 10 8 7 12 12 Si 1.86796 * 120.00040 * 191.10862 * 10 8 7 13 13 H 1.48501 * 109.47288 * 0.02562 * 12 10 8 14 14 H 1.48493 * 109.47396 * 120.00228 * 12 10 8 15 15 H 1.48506 * 109.46953 * 240.00227 * 12 10 8 16 16 C 1.36472 * 113.40681 * 179.97438 * 7 6 5 17 17 S 1.69977 * 111.93855 * 359.97438 * 16 7 6 18 18 C 1.39288 * 119.34479 * 0.02562 * 6 5 4 19 19 C 1.38571 * 119.98815 * 180.02562 * 3 2 1 20 20 O 1.36024 * 119.87953 * 359.97438 * 19 3 2 21 21 H 1.08997 * 109.46706 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46614 * 299.99570 * 1 2 3 23 23 H 1.08998 * 109.47059 * 59.99440 * 1 2 3 24 24 H 1.08001 * 119.86858 * 359.96260 * 4 3 2 25 25 H 1.07998 * 119.75393 * 179.63705 * 5 4 3 26 26 H 0.96996 * 120.00152 * 179.97438 * 11 10 8 27 27 H 1.07989 * 124.03499 * 179.97438 * 16 7 6 28 28 H 0.96705 * 114.00344 * 269.73025 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2892 2.3773 0.0073 5 6 1.9073 3.6045 0.0010 6 6 3.3112 3.6965 -0.0056 7 6 4.1664 4.8877 -0.0123 8 6 3.6613 6.2020 -0.0139 9 1 2.6620 6.3969 0.3463 10 6 4.4526 7.2536 -0.4812 11 7 5.5714 7.0003 -1.1161 12 14 3.9170 9.0212 -0.2016 13 1 2.6277 9.0372 0.5349 14 1 4.9500 9.7315 0.5943 15 1 3.7479 9.7002 -1.5115 16 6 5.4999 4.5976 -0.0171 17 16 5.7854 2.9220 -0.0131 18 6 4.0718 2.5297 -0.0062 19 6 3.4302 1.2841 -0.0005 20 8 4.1685 0.1416 -0.0005 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 0.2108 2.3181 0.0123 25 1 1.3110 4.5049 0.0008 26 1 6.1208 7.7307 -1.4410 27 1 6.2807 5.3436 -0.0227 28 1 4.3858 -0.1863 0.8829 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396374894.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:51 Heat of formation + Delta-G solvation = -47.413347 kcal Electronic energy + Delta-G solvation = -15543.424436 eV Core-core repulsion = 12844.026450 eV Total energy + Delta-G solvation = -2699.397986 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.78398 -37.50706 -36.51912 -34.31174 -31.93222 -29.38222 -28.19106 -26.56282 -25.93824 -22.20034 -21.80572 -19.70875 -18.30786 -17.28416 -16.36412 -16.08431 -15.59100 -15.24734 -14.93025 -14.38844 -13.75919 -13.49203 -13.01171 -12.50054 -12.34559 -11.88062 -11.55813 -11.26685 -11.18894 -11.10296 -10.72887 -10.58236 -10.11207 -10.09175 -9.66153 -9.35893 -9.22168 -8.24460 -7.26024 -6.68903 -6.59163 -4.31840 1.74574 1.84046 2.72059 2.94671 3.08631 3.13103 3.63105 3.68544 3.82715 3.99216 4.33822 4.75140 5.17253 5.27476 5.29305 5.44304 5.55118 5.70973 5.99527 6.07944 6.35812 6.73919 6.86196 7.02573 7.14586 7.20747 7.59919 7.73952 7.97257 8.23529 8.46548 8.77373 8.88607 10.28880 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.030608 B = 0.007080 C = 0.005828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.582194 B = 3953.823180 C = 4803.327075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.314 6.314 3 C 0.093 3.907 4 C -0.213 4.213 5 C -0.042 4.042 6 C -0.080 4.080 7 C 0.082 3.918 8 C -0.434 4.434 9 H 0.075 0.925 10 C 0.067 3.933 11 N -0.800 5.800 12 Si 0.913 3.087 13 H -0.262 1.262 14 H -0.274 1.274 15 H -0.276 1.276 16 C -0.358 4.358 17 S 0.069 5.931 18 C -0.137 4.137 19 C 0.085 3.915 20 O -0.484 6.484 21 H 0.093 0.907 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.125 0.875 25 H 0.125 0.875 26 H 0.277 0.723 27 H 0.164 0.836 28 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.525 -6.848 3.079 9.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.228 6.228 3 C 0.046 3.954 4 C -0.235 4.235 5 C -0.062 4.062 6 C -0.091 4.091 7 C 0.073 3.927 8 C -0.467 4.467 9 H 0.093 0.907 10 C -0.148 4.148 11 N -0.427 5.427 12 Si 0.738 3.262 13 H -0.186 1.186 14 H -0.199 1.199 15 H -0.201 1.201 16 C -0.494 4.494 17 S 0.333 5.667 18 C -0.253 4.253 19 C 0.034 3.966 20 O -0.292 6.292 21 H 0.111 0.889 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.143 0.857 25 H 0.143 0.857 26 H 0.087 0.913 27 H 0.181 0.819 28 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -4.878 -7.586 2.333 9.316 hybrid contribution -1.689 1.930 0.468 2.607 sum -6.567 -5.656 2.801 9.109 Atomic orbital electron populations 1.22957 0.79430 1.03079 1.01104 1.86068 1.20398 1.26761 1.89539 1.18857 0.90861 0.84338 1.01375 1.20743 0.99116 0.91771 1.11891 1.20722 0.93035 0.96558 0.95908 1.19633 0.93195 0.92958 1.03266 1.17292 0.89607 0.91038 0.94735 1.18949 1.00750 0.90310 1.36733 0.90659 1.25772 0.94650 1.01338 0.93059 1.69877 1.11778 1.33803 1.27282 0.86184 0.79658 0.81619 0.78767 1.18597 1.19923 1.20119 1.24483 1.00668 0.95061 1.29203 1.81973 1.00581 1.04439 1.79668 1.22807 0.99772 0.94825 1.07895 1.16736 0.85780 0.84148 1.09981 1.84891 1.72504 1.39436 1.32357 0.88881 0.93044 0.92985 0.85741 0.85705 0.91265 0.81852 0.77256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 15 2 O -0.31 -5.19 10.26 -34.85 -0.36 -5.55 15 3 C 0.09 1.75 6.69 -39.18 -0.26 1.49 15 4 C -0.21 -3.79 9.01 -39.61 -0.36 -4.15 15 5 C -0.04 -0.87 9.85 -38.96 -0.38 -1.25 15 6 C -0.08 -1.92 6.02 -105.19 -0.63 -2.55 15 7 C 0.08 2.17 5.69 -106.17 -0.60 1.57 15 8 C -0.43 -11.41 9.07 -38.08 -0.35 -11.76 15 9 H 0.08 1.87 7.68 -52.49 -0.40 1.46 15 10 C 0.07 1.70 5.36 -17.33 -0.09 1.61 15 11 N -0.80 -21.06 10.79 55.54 0.60 -20.46 15 12 Si 0.91 18.84 29.57 -169.99 -5.03 13.81 15 13 H -0.26 -5.29 7.11 56.52 0.40 -4.89 15 14 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 15 H -0.28 -5.63 7.11 56.52 0.40 -5.23 15 16 C -0.36 -9.42 9.51 30.10 0.29 -9.14 15 17 S 0.07 1.58 22.92 -107.50 -2.46 -0.88 15 18 C -0.14 -3.14 6.39 -38.49 -0.25 -3.39 15 19 C 0.09 1.76 6.74 -38.76 -0.26 1.50 15 20 O -0.48 -9.03 13.24 -34.92 -0.46 -9.50 15 21 H 0.09 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.05 0.52 7.64 -51.93 -0.40 0.13 15 23 H 0.05 0.56 7.67 -51.93 -0.40 0.16 15 24 H 0.12 1.76 6.29 -52.49 -0.33 1.43 15 25 H 0.13 2.35 7.87 -52.49 -0.41 1.93 15 26 H 0.28 6.64 8.30 -40.82 -0.34 6.30 15 27 H 0.16 4.53 6.26 -52.49 -0.33 4.20 15 28 H 0.37 5.21 9.07 45.56 0.41 5.62 15 LS Contribution 261.16 15.07 3.94 3.94 Total: -1.00 -29.95 261.16 -7.10 -37.05 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -1.41 Total: 6.32 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: -1.91 Total: -24.73 kcal Atomic # 7 Polarization: -21.06 SS G_CDS: 0.60 Total: -20.46 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.82 Total: -15.05 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.46 Total: -0.88 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.95 -7.10 -37.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396374894.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.364 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds