Wall clock time and date at job start Mon Mar 30 2020 05:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36132 * 116.99749 * 2 1 4 4 C 1.32930 * 122.13213 * 0.02562 * 3 2 1 5 5 S 1.75463 * 110.76914 * 179.97438 * 4 3 2 6 6 C 1.76037 * 91.58920 * 0.02562 * 5 4 3 7 7 C 1.40032 * 109.50261 * 359.97438 * 6 5 4 8 8 C 1.42153 * 119.07456 * 179.97438 * 7 6 5 9 9 C 1.35140 * 121.03551 * 359.76960 * 8 7 6 10 10 C 1.41192 * 120.44395 * 0.48913 * 9 8 7 11 11 C 1.40806 * 120.25939 * 179.77637 * 10 9 8 12 12 H 1.07994 * 120.00827 * 154.21674 * 11 10 9 13 13 C 1.39759 * 119.99925 * 334.21732 * 11 10 9 14 14 N 1.31008 * 119.99485 * 334.37872 * 13 11 10 15 15 Si 1.86794 * 120.00289 * 154.38090 * 13 11 10 16 16 H 1.48496 * 109.47330 * 180.02562 * 15 13 11 17 17 H 1.48504 * 109.46929 * 299.99955 * 15 13 11 18 18 H 1.48504 * 109.47095 * 59.99862 * 15 13 11 19 19 C 1.39540 * 130.38003 * 180.02562 * 6 5 4 20 20 O 1.35669 * 120.08418 * 359.97042 * 19 6 5 21 21 H 1.08999 * 109.47467 * 300.00173 * 1 2 3 22 22 H 1.09002 * 109.47565 * 60.00515 * 1 2 3 23 23 H 1.09001 * 109.47010 * 180.02562 * 1 2 3 24 24 H 1.08002 * 124.61111 * 0.02562 * 4 3 2 25 25 H 1.07997 * 119.48085 * 180.02562 * 8 7 6 26 26 H 1.07998 * 119.77584 * 180.26499 * 9 8 7 27 27 H 0.97001 * 120.00188 * 354.24719 * 14 13 11 28 28 H 0.96695 * 113.99847 * 270.02967 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2130 0.0000 4 6 1.3649 2.3539 0.0005 5 16 2.4538 3.7298 0.0011 6 6 3.8639 2.6760 -0.0002 7 6 3.4482 1.3388 -0.0004 8 6 4.4296 0.3103 -0.0019 9 6 5.7483 0.6056 -0.0078 10 6 6.1805 1.9498 -0.0022 11 6 7.5555 2.2530 -0.0037 12 1 7.9008 3.1936 -0.4066 13 6 8.4737 1.3366 0.5164 14 7 8.0934 0.4718 1.4240 15 14 10.2430 1.3450 -0.0825 16 1 11.0081 0.2832 0.6191 17 1 10.2716 1.0906 -1.5453 18 1 10.8557 2.6675 0.2020 19 6 5.2244 2.9863 0.0000 20 8 5.6264 4.2821 0.0008 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.2872 2.4244 0.0013 25 1 4.1163 -0.7232 -0.0025 26 1 6.4765 -0.1919 -0.0132 27 1 7.1988 0.5206 1.7958 28 1 5.7425 4.6583 -0.8824 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396375561.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:16 Heat of formation + Delta-G solvation = -71.270469 kcal Electronic energy + Delta-G solvation = -15631.449443 eV Core-core repulsion = 12931.016934 eV Total energy + Delta-G solvation = -2700.432509 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.00625 -39.73933 -37.39947 -36.52585 -33.89679 -30.82189 -30.09668 -28.60164 -26.84392 -23.88317 -23.16258 -21.44195 -20.25519 -19.30269 -17.93110 -17.64031 -16.80413 -16.64360 -16.43579 -15.72802 -15.55631 -15.32880 -14.66085 -14.20691 -13.92600 -13.65242 -13.28240 -13.02313 -12.69757 -12.38445 -12.23769 -11.97989 -11.86578 -11.55043 -11.49590 -11.19065 -10.90123 -9.97783 -9.47844 -9.40363 -8.30709 -6.54318 0.00546 0.58883 0.81190 1.26571 1.34573 1.52751 1.75468 1.82349 2.27904 2.50798 2.51889 3.20158 3.73734 3.94444 4.27277 4.29090 4.38770 4.52154 4.68783 4.73232 4.78167 4.97660 5.10005 5.31526 5.44780 5.59174 5.62444 5.90265 5.97281 6.42022 6.42273 6.61161 7.15785 7.80933 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.033884 B = 0.006909 C = 0.005874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.147632 B = 4051.571362 C = 4765.929003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.328 6.328 3 C 0.159 3.841 4 C -0.367 4.367 5 S 0.071 5.929 6 C -0.090 4.090 7 C -0.232 4.232 8 C -0.039 4.039 9 C -0.201 4.201 10 C 0.070 3.930 11 C -0.492 4.492 12 H 0.089 0.911 13 C 0.003 3.997 14 N -0.789 5.789 15 Si 1.121 2.879 16 H -0.269 1.269 17 H -0.257 1.257 18 H -0.256 1.256 19 C -0.041 4.041 20 O -0.488 6.488 21 H 0.060 0.940 22 H 0.063 0.937 23 H 0.122 0.878 24 H 0.184 0.816 25 H 0.120 0.880 26 H 0.111 0.889 27 H 0.288 0.712 28 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.994 0.238 -3.776 7.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.243 6.243 3 C 0.104 3.896 4 C -0.501 4.501 5 S 0.329 5.671 6 C -0.205 4.205 7 C -0.238 4.238 8 C -0.059 4.059 9 C -0.221 4.221 10 C 0.063 3.937 11 C -0.518 4.518 12 H 0.107 0.893 13 C -0.216 4.216 14 N -0.410 5.410 15 Si 0.936 3.064 16 H -0.193 1.193 17 H -0.182 1.182 18 H -0.180 1.180 19 C -0.094 4.094 20 O -0.297 6.297 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.140 0.860 24 H 0.201 0.799 25 H 0.138 0.862 26 H 0.129 0.871 27 H 0.100 0.900 28 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -5.887 0.642 -2.948 6.615 hybrid contribution -1.713 -0.515 -0.460 1.847 sum -7.599 0.127 -3.409 8.330 Atomic orbital electron populations 1.23313 0.76445 1.05436 1.02074 1.86021 1.23368 1.25923 1.88963 1.17558 0.90122 0.84970 0.96918 1.24643 1.03677 0.94386 1.27345 1.83335 0.93603 1.07781 1.82409 1.22752 0.97019 0.96486 1.04287 1.17191 0.91152 0.92862 1.22631 1.20490 0.91816 0.97491 0.96112 1.20688 0.95213 0.95881 1.10316 1.18155 0.93891 0.91407 0.90235 1.20793 0.91711 1.05788 1.33534 0.89333 1.28727 1.11119 0.89692 0.92090 1.70641 1.22836 1.30765 1.16735 0.82957 0.67325 0.78629 0.77473 1.19339 1.18174 1.18035 1.17644 0.87808 0.83719 1.20259 1.84762 1.89390 1.22970 1.32532 0.92109 0.91887 0.85960 0.79871 0.86236 0.87113 0.89963 0.77714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.91 113.37 1.12 1.61 15 2 O -0.33 -11.64 10.47 -95.05 -1.00 -12.63 15 3 C 0.16 6.48 6.66 21.70 0.14 6.62 15 4 C -0.37 -13.28 9.97 66.65 0.66 -12.61 15 5 S 0.07 2.78 23.26 -56.49 -1.31 1.47 15 6 C -0.09 -4.29 6.41 23.02 0.15 -4.14 15 7 C -0.23 -10.94 5.89 -21.27 -0.13 -11.06 15 8 C -0.04 -1.84 9.90 22.53 0.22 -1.61 15 9 C -0.20 -10.12 7.84 22.28 0.17 -9.94 15 10 C 0.07 3.64 5.29 -21.24 -0.11 3.53 15 11 C -0.49 -24.97 8.61 23.27 0.20 -24.77 15 12 H 0.09 4.34 7.70 -2.91 -0.02 4.32 15 13 C 0.00 0.13 4.92 85.18 0.42 0.55 15 14 N -0.79 -40.08 12.33 21.80 0.27 -39.81 15 15 Si 1.12 39.40 30.00 68.60 2.06 41.46 15 16 H -0.27 -9.33 7.11 99.48 0.71 -8.62 15 17 H -0.26 -8.44 7.11 99.48 0.71 -7.73 15 18 H -0.26 -8.33 7.11 99.48 0.71 -7.62 15 19 C -0.04 -2.07 6.76 23.27 0.16 -1.92 15 20 O -0.49 -22.61 12.75 -89.86 -1.15 -23.75 15 21 H 0.06 1.26 7.82 -2.39 -0.02 1.24 15 22 H 0.06 1.28 7.82 -2.39 -0.02 1.26 15 23 H 0.12 2.04 8.14 -2.39 -0.02 2.02 15 24 H 0.18 5.21 6.88 -2.91 -0.02 5.19 15 25 H 0.12 5.10 8.06 -2.91 -0.02 5.08 15 26 H 0.11 5.58 6.50 -2.91 -0.02 5.56 15 27 H 0.29 15.43 6.71 -92.71 -0.62 14.81 15 28 H 0.37 13.72 9.06 -74.06 -0.67 13.05 15 Total: -1.00 -61.06 260.99 2.57 -58.48 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.69 Total: 28.53 kcal Atomic # 6 Polarization: -56.76 SS G_CDS: 3.02 Total: -53.74 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.27 Total: -39.81 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -2.14 Total: -36.39 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.06 Total: 41.46 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -1.31 Total: 1.47 kcal Total: -61.06 2.57 -58.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396375561.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.789 kcal (2) G-P(sol) polarization free energy of solvation -61.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds