Wall clock time and date at job start Mon Mar 30 2020 05:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36033 * 117.00458 * 2 1 4 4 C 1.38211 * 119.54215 * 359.97438 * 3 2 1 5 5 C 1.39845 * 121.51542 * 179.97438 * 4 3 2 6 6 S 1.76101 * 130.47413 * 180.02562 * 5 4 3 7 7 C 1.75503 * 91.51946 * 179.97438 * 6 5 4 8 8 C 1.32617 * 110.66023 * 359.97438 * 7 6 5 9 9 C 1.39558 * 120.21030 * 0.02562 * 5 4 3 10 10 C 1.47921 * 118.20079 * 0.02562 * 9 5 4 11 11 C 1.40436 * 120.39026 * 180.02562 * 10 9 5 12 12 H 1.07999 * 120.00160 * 140.50617 * 11 10 9 13 13 C 1.39946 * 119.99963 * 320.50138 * 11 10 9 14 14 N 1.30904 * 120.00365 * 339.37484 * 13 11 10 15 15 Si 1.86801 * 120.00013 * 159.37564 * 13 11 10 16 16 H 1.48496 * 109.47063 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46875 * 120.00505 * 15 13 11 18 18 H 1.48500 * 109.47242 * 240.00175 * 15 13 11 19 19 C 1.38715 * 119.54986 * 179.97438 * 3 2 1 20 20 O 1.35825 * 120.02456 * 359.73198 * 19 3 2 21 21 H 1.09005 * 109.46766 * 299.99545 * 1 2 3 22 22 H 1.09000 * 109.46962 * 59.99356 * 1 2 3 23 23 H 1.08996 * 109.47517 * 179.97438 * 1 2 3 24 24 H 1.08000 * 119.24111 * 359.97438 * 4 3 2 25 25 H 1.07998 * 124.67150 * 179.97438 * 7 6 5 26 26 H 1.07993 * 122.09558 * 180.02562 * 8 7 6 27 27 H 0.96996 * 120.00365 * 179.97438 * 14 13 11 28 28 H 0.96704 * 114.00430 * 86.26240 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2120 0.0000 4 6 1.2848 2.3652 -0.0005 5 6 1.8765 3.6323 0.0000 6 16 1.1463 5.2348 0.0001 7 6 2.7236 6.0045 0.0016 8 6 3.6883 5.0946 0.0025 9 6 3.2663 3.7582 0.0005 10 6 4.0802 2.5230 -0.0001 11 6 5.4826 2.5963 0.0010 12 1 6.0591 1.9031 0.5956 13 6 6.1332 3.5674 -0.7685 14 7 5.5122 4.1295 -1.7746 15 14 7.8877 4.0617 -0.3601 16 1 8.3605 3.2843 0.8134 17 1 8.7648 3.7813 -1.5252 18 1 7.9326 5.5120 -0.0444 19 6 3.4324 1.2736 0.0005 20 8 4.1636 0.1290 0.0066 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 0.2077 2.2858 -0.0014 25 1 2.8861 7.0722 0.0018 26 1 4.7334 5.3664 0.0040 27 1 5.9630 4.8028 -2.3077 28 1 4.3274 -0.2378 -0.8731 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396376092.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:55 Heat of formation + Delta-G solvation = -59.335735 kcal Electronic energy + Delta-G solvation = -15989.790463 eV Core-core repulsion = 13289.875483 eV Total energy + Delta-G solvation = -2699.914980 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.86014 -38.92734 -37.73545 -35.57880 -34.34211 -31.40861 -29.65428 -27.67339 -26.93594 -24.11334 -22.86622 -21.15582 -20.07319 -18.49935 -17.99550 -17.66683 -17.02779 -16.58179 -16.48773 -15.80862 -15.33873 -14.81972 -14.45652 -14.09489 -13.77669 -13.51427 -13.36300 -13.01742 -12.81707 -12.49456 -12.44262 -12.07431 -11.99271 -11.54091 -11.17020 -10.94894 -10.69020 -9.97207 -8.91633 -8.62690 -8.30295 -6.49027 0.16700 0.65474 0.92109 1.32381 1.38618 1.43927 1.53309 1.80661 2.16244 2.53032 2.61867 3.27682 3.84430 4.26431 4.36277 4.42461 4.46177 4.65947 4.73290 4.86814 5.01917 5.12896 5.21335 5.32761 5.44520 5.73476 5.84722 5.91982 6.27928 6.52915 6.62565 6.73451 7.34984 8.15495 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.019682 B = 0.010751 C = 0.007218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.307003 B = 2603.871911 C = 3878.183776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.331 6.331 3 C 0.160 3.840 4 C -0.299 4.299 5 C -0.088 4.088 6 S 0.059 5.941 7 C -0.264 4.264 8 C -0.053 4.053 9 C -0.170 4.170 10 C 0.145 3.855 11 C -0.467 4.467 12 H 0.084 0.916 13 C 0.050 3.950 14 N -0.790 5.790 15 Si 0.975 3.025 16 H -0.260 1.260 17 H -0.262 1.262 18 H -0.256 1.256 19 C -0.095 4.095 20 O -0.487 6.487 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.123 0.877 24 H 0.130 0.870 25 H 0.179 0.821 26 H 0.121 0.879 27 H 0.297 0.703 28 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.162 1.207 0.311 4.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.245 6.245 3 C 0.112 3.888 4 C -0.324 4.324 5 C -0.204 4.204 6 S 0.319 5.681 7 C -0.396 4.396 8 C -0.082 4.082 9 C -0.177 4.177 10 C 0.139 3.861 11 C -0.494 4.494 12 H 0.102 0.898 13 C -0.170 4.170 14 N -0.413 5.413 15 Si 0.794 3.206 16 H -0.184 1.184 17 H -0.186 1.186 18 H -0.181 1.181 19 C -0.143 4.143 20 O -0.294 6.294 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.141 0.859 24 H 0.148 0.852 25 H 0.196 0.804 26 H 0.138 0.862 27 H 0.108 0.892 28 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -5.516 1.904 0.719 5.879 hybrid contribution 1.910 -0.370 -0.631 2.045 sum -3.606 1.534 0.088 3.920 Atomic orbital electron populations 1.23251 0.77409 1.05027 1.01652 1.86073 1.22865 1.26821 1.88777 1.18960 0.91108 0.84128 0.94579 1.19654 0.98619 0.89077 1.25032 1.22470 0.96274 0.97397 1.04226 1.83051 1.09005 0.95355 1.80649 1.25040 0.94317 1.03122 1.17145 1.19752 0.99702 0.91264 0.97526 1.19263 0.91274 0.93880 1.13320 1.18722 0.93520 0.88216 0.85616 1.19514 0.91377 1.14471 1.24062 0.89765 1.26680 1.04710 0.93063 0.92518 1.69919 1.40779 1.19474 1.11168 0.85265 0.76120 0.79419 0.79753 1.18365 1.18607 1.18050 1.17625 0.86013 0.86539 1.24119 1.84790 1.73799 1.38200 1.32588 0.92542 0.92509 0.85880 0.85178 0.80396 0.86157 0.89178 0.78269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.79 113.37 1.11 1.71 15 2 O -0.33 -13.59 10.24 -79.22 -0.81 -14.41 15 3 C 0.16 7.60 6.67 22.38 0.15 7.75 15 4 C -0.30 -13.43 9.02 22.65 0.20 -13.23 15 5 C -0.09 -4.16 6.48 22.98 0.15 -4.01 15 6 S 0.06 2.29 23.30 -56.49 -1.32 0.97 15 7 C -0.26 -10.47 11.11 66.66 0.74 -9.73 15 8 C -0.05 -2.48 8.27 21.57 0.18 -2.31 15 9 C -0.17 -8.72 5.52 -19.93 -0.11 -8.83 15 10 C 0.14 7.83 5.50 -19.57 -0.11 7.73 15 11 C -0.47 -24.46 8.42 23.22 0.20 -24.26 15 12 H 0.08 4.45 7.91 -2.91 -0.02 4.43 15 13 C 0.05 2.37 3.82 85.25 0.33 2.69 15 14 N -0.79 -38.38 10.87 21.83 0.24 -38.14 15 15 Si 0.97 35.70 29.61 68.60 2.03 37.73 15 16 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 17 H -0.26 -9.13 7.11 99.48 0.71 -8.42 15 18 H -0.26 -8.86 7.11 99.48 0.71 -8.15 15 19 C -0.09 -4.94 6.73 22.99 0.15 -4.79 15 20 O -0.49 -23.77 12.68 -76.88 -0.97 -24.74 15 21 H 0.06 1.53 7.63 -2.38 -0.02 1.51 15 22 H 0.06 1.53 7.62 -2.39 -0.02 1.51 15 23 H 0.12 2.60 8.14 -2.39 -0.02 2.58 15 24 H 0.13 5.00 6.14 -2.91 -0.02 4.98 15 25 H 0.18 5.72 8.06 -2.91 -0.02 5.70 15 26 H 0.12 5.64 6.08 -2.91 -0.02 5.62 15 27 H 0.30 12.87 8.30 -92.71 -0.77 12.10 15 28 H 0.36 15.06 9.06 -74.05 -0.67 14.39 15 Total: -1.00 -61.24 258.28 2.70 -58.55 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.54 Total: 27.32 kcal Atomic # 6 Polarization: -50.26 SS G_CDS: 2.99 Total: -47.27 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.24 Total: -38.14 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -1.79 Total: -39.15 kcal Atomic # 14 Polarization: 35.70 SS G_CDS: 2.03 Total: 37.73 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -1.32 Total: 0.97 kcal Total: -61.24 2.70 -58.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396376092.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.790 kcal (2) G-P(sol) polarization free energy of solvation -61.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds