Wall clock time and date at job start Mon Mar 30 2020 05:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35973 * 116.99922 * 2 1 4 4 C 1.37310 * 119.78470 * 180.02562 * 3 2 1 5 5 C 1.42054 * 120.42098 * 179.97438 * 4 3 2 6 6 C 1.39797 * 128.39411 * 180.02562 * 5 4 3 7 7 C 1.36950 * 115.02230 * 180.02562 * 6 5 4 8 8 C 1.39943 * 124.84538 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00190 * 0.02562 * 8 7 6 10 10 C 1.40176 * 120.00347 * 179.97438 * 8 7 6 11 11 N 1.30766 * 119.99374 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00206 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47241 * 0.02562 * 12 10 8 14 14 H 1.48509 * 109.47013 * 120.00160 * 12 10 8 15 15 H 1.48504 * 109.47171 * 239.99797 * 12 10 8 16 16 S 1.75461 * 110.31549 * 359.97438 * 7 6 5 17 17 C 1.40185 * 118.68570 * 0.02628 * 5 4 3 18 18 C 1.40054 * 119.90607 * 359.97438 * 17 5 4 19 19 O 1.35968 * 119.78852 * 180.02562 * 18 17 5 20 20 C 1.38021 * 120.42012 * 359.97438 * 18 17 5 21 21 H 1.08997 * 109.46872 * 299.99559 * 1 2 3 22 22 H 1.08993 * 109.47273 * 59.99659 * 1 2 3 23 23 H 1.09008 * 109.46977 * 179.97438 * 1 2 3 24 24 H 1.08002 * 119.79264 * 359.97438 * 4 3 2 25 25 H 1.07998 * 122.48908 * 359.97438 * 6 5 4 26 26 H 0.97006 * 119.99562 * 180.02562 * 11 10 8 27 27 H 0.96694 * 113.99774 * 269.97855 * 19 18 17 28 28 H 1.08003 * 119.93385 * 180.30390 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4178 1.2783 -0.0005 5 6 4.0767 2.5367 -0.0011 6 6 5.4501 2.7977 -0.0022 7 6 5.7875 4.1250 -0.0019 8 6 7.0977 4.6169 -0.0023 9 1 7.9320 3.9312 -0.0033 10 6 7.3271 5.9998 -0.0026 11 7 6.3169 6.8301 -0.0019 12 14 9.0759 6.6564 -0.0038 13 1 10.0314 5.5198 -0.0051 14 1 9.2923 7.4858 -1.2166 15 1 9.2941 7.4859 1.2085 16 16 4.3429 5.1208 -0.0010 17 6 3.2993 3.7033 -0.0005 18 6 1.9018 3.6112 0.0000 19 8 1.1502 4.7442 0.0001 20 6 1.2828 2.3775 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 3.9994 0.3682 -0.0005 25 1 6.1901 2.0110 -0.0023 26 1 6.4756 7.7871 -0.0024 27 1 0.9328 5.0719 0.8834 28 1 0.2046 2.3156 -0.0050 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396376851.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:02 Heat of formation + Delta-G solvation = -64.894502 kcal Electronic energy + Delta-G solvation = -15340.085012 eV Core-core repulsion = 12639.928986 eV Total energy + Delta-G solvation = -2700.156026 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.35497 -37.60927 -36.23715 -34.58162 -32.39909 -29.05699 -28.83259 -26.60279 -25.46620 -22.07415 -21.52615 -19.53410 -18.18550 -17.32291 -16.29176 -16.01881 -15.67161 -15.21103 -14.80600 -14.25805 -13.67060 -13.39222 -12.87845 -12.45008 -12.22536 -12.09442 -11.68986 -11.48480 -11.32061 -11.09276 -10.66965 -10.48714 -10.21739 -10.02942 -9.93826 -9.10652 -9.07565 -8.09960 -7.42656 -7.24424 -6.24074 -4.77684 1.89192 2.35757 2.75344 2.81879 2.89774 3.24562 3.46540 3.54567 3.81065 3.90604 4.48021 4.88427 5.06151 5.38508 5.44586 5.63658 5.83514 6.07495 6.33435 6.55729 6.60517 6.84279 6.98064 7.07891 7.27198 7.36250 7.57098 7.75799 7.89889 8.01327 8.25251 8.34281 8.40869 9.58136 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.046317 B = 0.006058 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.382598 B = 4621.035774 C = 5207.746524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.326 6.326 3 C 0.142 3.858 4 C -0.199 4.199 5 C 0.063 3.937 6 C -0.366 4.366 7 C 0.056 3.944 8 C -0.377 4.377 9 H 0.101 0.899 10 C 0.051 3.949 11 N -0.771 5.771 12 Si 0.940 3.060 13 H -0.255 1.255 14 H -0.267 1.267 15 H -0.267 1.267 16 S 0.154 5.846 17 C -0.316 4.316 18 C 0.196 3.804 19 O -0.503 6.503 20 C -0.299 4.299 21 H 0.048 0.952 22 H 0.049 0.951 23 H 0.089 0.911 24 H 0.112 0.888 25 H 0.109 0.891 26 H 0.302 0.698 27 H 0.381 0.619 28 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.228 -1.673 1.627 4.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.241 6.241 3 C 0.096 3.904 4 C -0.220 4.220 5 C 0.055 3.945 6 C -0.391 4.391 7 C -0.064 4.064 8 C -0.410 4.410 9 H 0.119 0.881 10 C -0.171 4.171 11 N -0.396 5.396 12 Si 0.762 3.238 13 H -0.178 1.178 14 H -0.192 1.192 15 H -0.192 1.192 16 S 0.414 5.586 17 C -0.431 4.431 18 C 0.148 3.852 19 O -0.312 6.312 20 C -0.320 4.320 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.107 0.893 24 H 0.130 0.870 25 H 0.127 0.873 26 H 0.115 0.885 27 H 0.235 0.765 28 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.404 -0.149 1.011 4.521 hybrid contribution 0.542 -1.059 0.474 1.281 sum -3.863 -1.209 1.485 4.311 Atomic orbital electron populations 1.22859 0.79803 1.02548 1.00963 1.86015 1.20295 1.27946 1.89815 1.18184 0.91630 0.82795 0.97818 1.19893 0.90511 0.96709 1.14868 1.17579 0.92840 0.90583 0.93525 1.19563 0.92775 0.94879 1.31839 1.21550 0.96651 0.94563 0.93657 1.19436 0.92441 0.91970 1.37185 0.88089 1.26376 1.01377 0.96935 0.92399 1.68654 1.33091 1.05926 1.31961 0.85688 0.79351 0.79592 0.79125 1.17790 1.19158 1.19164 1.84852 0.93211 1.02037 1.78511 1.23876 0.96573 1.02175 1.20429 1.17341 0.86676 0.84455 0.96742 1.84755 1.72182 1.41588 1.32719 1.20648 0.98622 0.91499 1.21223 0.93287 0.93231 0.89270 0.87001 0.87260 0.88454 0.76454 0.86565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.81 101.05 0.99 1.44 15 2 O -0.33 -6.06 10.49 -19.65 -0.21 -6.26 15 3 C 0.14 3.01 6.65 -39.50 -0.26 2.75 15 4 C -0.20 -4.59 10.01 -38.46 -0.38 -4.97 15 5 C 0.06 1.59 5.85 -107.12 -0.63 0.96 15 6 C -0.37 -9.40 10.14 -39.47 -0.40 -9.80 15 7 C 0.06 1.45 6.11 -39.41 -0.24 1.21 15 8 C -0.38 -9.20 9.27 -38.22 -0.35 -9.56 15 9 H 0.10 2.32 7.85 -52.48 -0.41 1.91 15 10 C 0.05 1.15 5.50 -17.28 -0.10 1.06 15 11 N -0.77 -17.78 10.59 55.56 0.59 -17.19 15 12 Si 0.94 16.59 29.56 -169.99 -5.03 11.57 15 13 H -0.25 -4.44 7.11 56.52 0.40 -4.04 15 14 H -0.27 -4.64 7.11 56.52 0.40 -4.24 15 15 H -0.27 -4.61 7.11 56.52 0.40 -4.21 15 16 S 0.15 3.85 20.09 -107.50 -2.16 1.69 15 17 C -0.32 -7.82 6.42 -38.17 -0.25 -8.06 15 18 C 0.20 4.37 6.72 -38.98 -0.26 4.11 15 19 O -0.50 -9.84 13.46 -19.64 -0.26 -10.11 15 20 C -0.30 -6.14 8.95 -39.24 -0.35 -6.49 15 21 H 0.05 0.61 7.65 -51.93 -0.40 0.21 15 22 H 0.05 0.64 7.64 -51.93 -0.40 0.24 15 23 H 0.09 0.91 8.14 -51.92 -0.42 0.49 15 24 H 0.11 2.41 8.06 -52.49 -0.42 1.99 15 25 H 0.11 2.67 8.06 -52.49 -0.42 2.24 15 26 H 0.30 6.18 8.30 -40.82 -0.34 5.84 15 27 H 0.38 5.55 9.06 45.56 0.41 5.96 15 28 H 0.12 2.06 6.27 -52.48 -0.33 1.73 15 LS Contribution 261.97 15.07 3.95 3.95 Total: -1.00 -28.73 261.97 -6.88 -35.61 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -1.53 Total: 8.12 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: -2.23 Total: -27.37 kcal Atomic # 7 Polarization: -17.78 SS G_CDS: 0.59 Total: -17.19 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.47 Total: -16.37 kcal Atomic # 14 Polarization: 16.59 SS G_CDS: -5.03 Total: 11.57 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -2.16 Total: 1.69 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.73 -6.88 -35.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396376851.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.289 kcal (2) G-P(sol) polarization free energy of solvation -28.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds