Wall clock time and date at job start Mon Mar 30 2020 05:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35628 * 117.00112 * 2 1 4 4 S 1.75489 * 124.71941 * 0.02562 * 3 2 1 5 5 C 1.76055 * 91.61048 * 179.97438 * 4 3 2 6 6 C 1.39272 * 130.48086 * 179.97438 * 5 4 3 7 7 C 1.38347 * 121.50334 * 180.02562 * 6 5 4 8 8 C 1.37487 * 121.12724 * 359.95893 * 7 6 5 9 9 C 1.40395 * 120.11475 * 0.27920 * 8 7 6 10 10 C 1.40514 * 120.41795 * 179.72294 * 9 8 7 11 11 H 1.08001 * 119.99565 * 206.42369 * 10 9 8 12 12 C 1.39771 * 119.99912 * 26.43046 * 10 9 8 13 13 N 1.30974 * 120.00312 * 14.91797 * 12 10 9 14 14 Si 1.86802 * 119.99752 * 194.92406 * 12 10 9 15 15 H 1.48493 * 109.47125 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47272 * 119.99469 * 14 12 10 17 17 H 1.48500 * 109.46626 * 239.99570 * 14 12 10 18 18 C 1.39999 * 109.49268 * 359.97438 * 5 4 3 19 19 C 1.34203 * 124.72408 * 180.02562 * 3 2 1 20 20 O 1.36194 * 122.23306 * 0.04008 * 19 3 2 21 21 H 1.08999 * 109.47047 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47276 * 299.99691 * 1 2 3 23 23 H 1.09003 * 109.47479 * 59.99942 * 1 2 3 24 24 H 1.08003 * 119.24440 * 0.02562 * 6 5 4 25 25 H 1.08003 * 119.43849 * 179.97438 * 7 6 5 26 26 H 1.07994 * 119.93761 * 179.97438 * 8 7 6 27 27 H 0.96996 * 120.00043 * 180.02562 * 13 12 10 28 28 H 0.96708 * 113.99971 * 269.98079 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 16 1.2133 2.7539 0.0006 5 6 2.7397 3.6312 0.0010 6 6 2.9956 5.0002 0.0011 7 6 4.2880 5.4940 0.0009 8 6 5.3720 4.6483 0.0014 9 6 5.1803 3.2575 -0.0038 10 6 6.2836 2.3874 -0.0091 11 1 6.1881 1.3970 -0.4291 12 6 7.5045 2.8036 0.5291 13 7 7.5556 3.8676 1.2911 14 14 9.0634 1.8422 0.1616 15 1 8.7388 0.6898 -0.7168 16 1 10.0408 2.7266 -0.5223 17 1 9.6498 1.3457 1.4324 18 6 3.8024 2.7198 0.0012 19 6 3.3746 1.3888 -0.0005 20 8 4.2492 0.3448 -0.0019 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 2.1663 5.6921 0.0014 25 1 4.4481 6.5621 0.0005 26 1 6.3725 5.0547 0.0008 27 1 8.4030 4.1566 1.6643 28 1 4.5025 0.0427 0.8812 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396377391.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:29 Heat of formation + Delta-G solvation = -40.453680 kcal Electronic energy + Delta-G solvation = -15737.728244 eV Core-core repulsion = 13038.632052 eV Total energy + Delta-G solvation = -2699.096192 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.86959 -37.68305 -36.08122 -34.11603 -32.19338 -29.80702 -28.11839 -26.47967 -24.97923 -22.33306 -21.10766 -19.81228 -18.23537 -16.96228 -16.67791 -15.61799 -15.42446 -15.26873 -14.95390 -14.13846 -13.64248 -13.19634 -12.84994 -12.54630 -12.04948 -11.86078 -11.64262 -11.29886 -11.23023 -11.00271 -10.86823 -10.61280 -10.17832 -9.69261 -9.56513 -9.25788 -9.16875 -8.12238 -7.18097 -7.04071 -6.66477 -4.47358 1.82112 2.17565 2.61267 2.68261 2.97022 3.03703 3.05659 3.38950 3.76182 3.83541 4.38650 5.27609 5.37897 5.38393 5.51075 5.62952 6.10467 6.31274 6.38881 6.78506 6.86443 6.89729 7.08736 7.19124 7.48577 7.59939 7.82943 7.86133 7.99403 8.40682 8.54967 8.62137 8.70666 9.86655 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.026622 B = 0.008365 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.521048 B = 3346.384825 C = 4313.587136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.283 6.283 3 C -0.090 4.090 4 S 0.001 5.999 5 C -0.068 4.068 6 C -0.226 4.226 7 C -0.065 4.065 8 C -0.185 4.185 9 C 0.156 3.844 10 C -0.419 4.419 11 H 0.102 0.898 12 C 0.069 3.931 13 N -0.772 5.772 14 Si 0.917 3.083 15 H -0.255 1.255 16 H -0.269 1.269 17 H -0.271 1.271 18 C -0.195 4.195 19 C 0.128 3.872 20 O -0.473 6.473 21 H 0.096 0.904 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.125 0.875 27 H 0.286 0.714 28 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.035 -2.525 0.070 5.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.198 6.198 3 C -0.248 4.248 4 S 0.257 5.743 5 C -0.182 4.182 6 C -0.252 4.252 7 C -0.086 4.086 8 C -0.206 4.206 9 C 0.150 3.850 10 C -0.446 4.446 11 H 0.120 0.880 12 C -0.152 4.152 13 N -0.395 5.395 14 Si 0.741 3.259 15 H -0.178 1.178 16 H -0.194 1.194 17 H -0.197 1.197 18 C -0.201 4.201 19 C 0.072 3.928 20 O -0.281 6.281 21 H 0.114 0.886 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.110 0.890 25 H 0.115 0.885 26 H 0.143 0.857 27 H 0.097 0.903 28 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -6.316 -2.228 -0.394 6.709 hybrid contribution 1.779 -0.595 0.508 1.944 sum -4.537 -2.823 0.114 5.345 Atomic orbital electron populations 1.23010 0.79618 1.03192 1.01162 1.85845 1.19576 1.23207 1.91133 1.22760 0.94187 0.87496 1.20351 1.83488 1.09847 0.96850 1.84116 1.21629 0.92513 0.97249 1.06802 1.19432 0.96119 0.90836 1.18810 1.20487 0.92248 0.97771 0.98117 1.21100 0.98029 0.92647 1.08848 1.18380 0.88247 0.92207 0.86132 1.19935 0.92978 1.01829 1.29897 0.88012 1.26148 1.01394 0.94991 0.92696 1.69902 1.28593 1.20674 1.20315 0.86084 0.79772 0.80562 0.79508 1.17792 1.19433 1.19660 1.18839 0.94244 0.89854 1.17196 1.16508 0.84638 0.86909 1.04715 1.84840 1.62690 1.48338 1.32231 0.88599 0.93164 0.93146 0.88983 0.88512 0.85713 0.90277 0.76988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.25 101.05 1.04 1.42 15 2 O -0.28 -5.51 10.50 -26.71 -0.28 -5.79 15 3 C -0.09 -1.97 7.19 29.31 0.21 -1.76 15 4 S 0.00 0.01 21.98 -107.50 -2.36 -2.35 15 5 C -0.07 -1.60 6.47 -38.54 -0.25 -1.85 15 6 C -0.23 -5.13 10.01 -39.16 -0.39 -5.52 15 7 C -0.07 -1.48 9.95 -39.82 -0.40 -1.88 15 8 C -0.18 -4.61 8.64 -39.04 -0.34 -4.95 15 9 C 0.16 4.06 5.75 -104.26 -0.60 3.47 15 10 C -0.42 -10.56 8.50 -38.15 -0.32 -10.88 15 11 H 0.10 2.56 6.29 -52.49 -0.33 2.23 15 12 C 0.07 1.60 5.18 -17.34 -0.09 1.51 15 13 N -0.77 -18.42 10.91 55.54 0.61 -17.81 15 14 Si 0.92 17.52 29.58 -169.99 -5.03 12.49 15 15 H -0.25 -4.92 7.11 56.52 0.40 -4.52 15 16 H -0.27 -5.06 7.11 56.52 0.40 -4.65 15 17 H -0.27 -5.08 7.11 56.52 0.40 -4.68 15 18 C -0.20 -4.95 6.02 -104.69 -0.63 -5.58 15 19 C 0.13 3.05 6.71 -40.42 -0.27 2.78 15 20 O -0.47 -10.57 11.36 -28.48 -0.32 -10.89 15 21 H 0.10 1.04 8.14 -51.93 -0.42 0.62 15 22 H 0.05 0.67 8.03 -51.93 -0.42 0.25 15 23 H 0.05 0.68 8.03 -51.93 -0.42 0.26 15 24 H 0.09 1.86 8.06 -52.48 -0.42 1.44 15 25 H 0.10 1.90 8.06 -52.48 -0.42 1.48 15 26 H 0.13 3.13 6.18 -52.49 -0.32 2.81 15 27 H 0.29 6.12 8.30 -40.82 -0.34 5.78 15 28 H 0.38 6.92 9.07 45.56 0.41 7.33 15 LS Contribution 260.47 15.07 3.93 3.93 Total: -1.00 -28.34 260.47 -6.99 -35.33 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -1.48 Total: 8.34 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -2.04 Total: -23.25 kcal Atomic # 7 Polarization: -18.42 SS G_CDS: 0.61 Total: -17.81 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.60 Total: -16.68 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.36 Total: -2.35 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.34 -6.99 -35.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396377391.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.128 kcal (2) G-P(sol) polarization free energy of solvation -28.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds