Wall clock time and date at job start Mon Mar 30 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35766 * 116.99545 * 2 1 4 4 C 1.38197 * 120.02371 * 5.12218 * 3 2 1 5 5 C 1.37984 * 121.02831 * 179.72314 * 4 3 2 6 6 C 1.39582 * 121.60421 * 0.27580 * 5 4 3 7 7 S 1.76092 * 130.42747 * 179.97438 * 6 5 4 8 8 C 1.75496 * 91.55608 * 179.97438 * 7 6 5 9 9 O 1.35601 * 124.71334 * 179.97438 * 8 7 6 10 10 C 1.33512 * 110.57833 * 359.97438 * 8 7 6 11 11 C 1.39676 * 120.15084 * 359.97438 * 6 5 4 12 12 C 1.40901 * 120.02449 * 185.35337 * 3 2 1 13 13 C 1.40406 * 120.43190 * 0.02562 * 12 3 2 14 14 H 1.08003 * 119.99852 * 136.17096 * 13 12 3 15 15 C 1.39904 * 120.00174 * 316.17017 * 13 12 3 16 16 N 1.30943 * 120.00117 * 158.67730 * 15 13 12 17 17 Si 1.86801 * 119.99969 * 338.68034 * 15 13 12 18 18 H 1.48501 * 109.47173 * 95.55989 * 17 15 13 19 19 H 1.48501 * 109.46979 * 215.56100 * 17 15 13 20 20 H 1.48497 * 109.47103 * 335.56132 * 17 15 13 21 21 H 1.08998 * 109.47696 * 54.30456 * 1 2 3 22 22 H 1.09008 * 109.46486 * 174.30386 * 1 2 3 23 23 H 1.08998 * 109.47566 * 294.29801 * 1 2 3 24 24 H 1.08003 * 119.48697 * 0.02562 * 4 3 2 25 25 H 1.08007 * 119.19988 * 180.26007 * 5 4 3 26 26 H 0.96700 * 114.00271 * 269.99916 * 9 8 7 27 27 H 1.08004 * 122.17630 * 180.02562 * 10 8 7 28 28 H 0.96999 * 120.00328 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.2972 2.3668 0.1068 5 6 1.9024 3.6068 0.1147 6 6 3.2874 3.7455 0.0100 7 16 4.2924 5.1914 -0.0055 8 6 5.7534 4.2323 -0.1649 9 8 7.0074 4.7425 -0.2425 10 6 5.4588 2.9306 -0.1991 11 6 4.0989 2.6146 -0.1059 12 6 3.4476 1.2866 -0.1138 13 6 4.2169 0.1177 -0.2283 14 1 5.0206 0.0686 -0.9481 15 6 3.9425 -0.9834 0.5900 16 7 4.3397 -2.1791 0.2337 17 14 3.0094 -0.7477 2.1910 18 1 1.5664 -1.0180 1.9674 19 1 3.5362 -1.6866 3.2138 20 1 3.1837 0.6489 2.6645 21 1 -0.3634 0.5996 -0.8346 22 1 -0.3632 -1.0227 -0.1020 23 1 -0.3634 0.4228 0.9366 24 1 0.2226 2.2993 0.1903 25 1 1.2896 4.4917 0.2038 26 1 7.3008 4.9295 -1.1448 27 1 6.2206 2.1707 -0.2933 28 1 4.1498 -2.9425 0.8012 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396377498.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:20 Heat of formation + Delta-G solvation = -51.621232 kcal Electronic energy + Delta-G solvation = -15928.625117 eV Core-core repulsion = 13229.044664 eV Total energy + Delta-G solvation = -2699.580454 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.76709 -39.33663 -38.01784 -35.59400 -34.46566 -32.31818 -29.06979 -28.09081 -26.75038 -24.09232 -22.90909 -21.31993 -20.05770 -19.21242 -18.38787 -17.48817 -16.96020 -16.75094 -16.36409 -16.02192 -15.60963 -14.95601 -14.75615 -14.11157 -13.93051 -13.84955 -13.45138 -13.10595 -12.78097 -12.57326 -12.48318 -11.96620 -11.92073 -11.39584 -11.22669 -11.10969 -10.86673 -9.93350 -8.93802 -8.90105 -8.46792 -6.34779 -0.21540 0.62087 0.64150 1.09867 1.29522 1.36526 1.48545 1.52422 2.20799 2.55434 2.79726 3.25159 3.43648 4.15074 4.28964 4.41906 4.50836 4.58385 4.67096 4.77338 4.91479 4.97619 5.10026 5.33339 5.47872 5.59956 5.71012 5.85334 6.23336 6.40145 6.64022 6.70298 7.03245 8.16533 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.025134 B = 0.009599 C = 0.007639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.748729 B = 2916.215199 C = 3664.719386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C -0.006 4.006 4 C -0.131 4.131 5 C -0.168 4.168 6 C -0.123 4.123 7 S 0.056 5.944 8 C -0.020 4.020 9 O -0.457 6.457 10 C -0.117 4.117 11 C -0.156 4.156 12 C 0.087 3.913 13 C -0.464 4.464 14 H 0.062 0.938 15 C 0.075 3.925 16 N -0.835 5.835 17 Si 0.956 3.044 18 H -0.229 1.229 19 H -0.281 1.281 20 H -0.276 1.276 21 H 0.065 0.935 22 H 0.103 0.897 23 H 0.057 0.943 24 H 0.150 0.850 25 H 0.137 0.863 26 H 0.405 0.595 27 H 0.129 0.871 28 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.585 7.974 0.283 9.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C -0.053 4.053 4 C -0.153 4.153 5 C -0.193 4.193 6 C -0.238 4.238 7 S 0.316 5.684 8 C -0.179 4.179 9 O -0.268 6.268 10 C -0.148 4.148 11 C -0.163 4.163 12 C 0.082 3.918 13 C -0.492 4.492 14 H 0.080 0.920 15 C -0.142 4.142 16 N -0.461 5.461 17 Si 0.780 3.220 18 H -0.152 1.152 19 H -0.208 1.208 20 H -0.201 1.201 21 H 0.083 0.917 22 H 0.121 0.879 23 H 0.076 0.924 24 H 0.167 0.833 25 H 0.155 0.845 26 H 0.262 0.738 27 H 0.147 0.853 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.600 9.012 0.959 10.654 hybrid contribution 0.339 -1.684 -0.260 1.738 sum -5.261 7.328 0.699 9.048 Atomic orbital electron populations 1.23157 0.78579 1.04327 1.01698 1.86113 1.21548 1.26802 1.89874 1.18906 0.91440 0.84878 1.10029 1.20967 1.00112 0.91088 1.03097 1.19868 0.90682 0.97430 1.11311 1.22458 0.98176 0.95054 1.08155 1.83411 0.96812 1.07494 1.80720 1.21841 0.88634 0.92340 1.15130 1.84739 1.24406 1.82964 1.34726 1.20236 0.96109 0.95794 1.02699 1.18873 0.92242 0.92838 1.12321 1.18034 0.89520 0.91045 0.93233 1.18966 1.15518 0.95830 1.18890 0.91992 1.26553 0.92986 0.93051 1.01633 1.69774 1.38504 1.00301 1.37475 0.85601 0.81419 0.78433 0.76573 1.15242 1.20808 1.20128 0.91670 0.87851 0.92401 0.83287 0.84540 0.73759 0.85292 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.47 113.37 1.07 1.59 15 2 O -0.33 -14.29 5.99 -90.93 -0.54 -14.83 15 3 C -0.01 -0.27 5.20 22.91 0.12 -0.15 15 4 C -0.13 -5.02 8.97 22.20 0.20 -4.82 15 5 C -0.17 -6.36 10.00 22.53 0.23 -6.13 15 6 C -0.12 -5.17 6.47 22.94 0.15 -5.02 15 7 S 0.06 1.99 23.29 -56.49 -1.32 0.67 15 8 C -0.02 -0.76 7.55 66.75 0.50 -0.26 15 9 O -0.46 -14.24 13.64 -89.11 -1.22 -15.45 15 10 C -0.12 -5.14 9.82 21.61 0.21 -4.93 15 11 C -0.16 -7.45 6.02 -19.96 -0.12 -7.57 15 12 C 0.09 4.46 4.84 -19.53 -0.09 4.37 15 13 C -0.46 -25.97 9.05 23.20 0.21 -25.76 15 14 H 0.06 3.73 8.06 -2.91 -0.02 3.70 15 15 C 0.07 4.02 4.85 85.23 0.41 4.43 15 16 N -0.83 -45.55 13.93 21.83 0.30 -45.25 15 17 Si 0.96 43.81 24.83 68.60 1.70 45.51 15 18 H -0.23 -9.54 5.98 99.48 0.59 -8.95 15 19 H -0.28 -12.17 7.11 99.48 0.71 -11.46 15 20 H -0.28 -13.44 7.11 99.48 0.71 -12.74 15 21 H 0.06 1.71 7.55 -2.39 -0.02 1.69 15 22 H 0.10 2.70 8.14 -2.38 -0.02 2.68 15 23 H 0.06 1.54 7.75 -2.39 -0.02 1.52 15 24 H 0.15 4.43 6.25 -2.91 -0.02 4.42 15 25 H 0.14 4.19 8.06 -2.91 -0.02 4.17 15 26 H 0.40 8.08 9.06 -74.06 -0.67 7.41 15 27 H 0.13 5.78 8.04 -2.91 -0.02 5.75 15 28 H 0.29 14.43 8.30 -92.71 -0.77 13.66 15 Total: -1.00 -64.00 255.32 2.24 -61.76 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.42 Total: 11.85 kcal Atomic # 6 Polarization: -47.15 SS G_CDS: 2.89 Total: -44.26 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.30 Total: -45.25 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -1.76 Total: -30.29 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.70 Total: 45.51 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -1.32 Total: 0.67 kcal Total: -64.00 2.24 -61.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396377498.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.135 kcal (2) G-P(sol) polarization free energy of solvation -64.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds