Wall clock time and date at job start Mon Mar 30 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35724 * 116.99987 * 2 1 4 4 C 1.38140 * 119.97669 * 5.18081 * 3 2 1 5 5 C 1.38424 * 120.92713 * 180.20924 * 4 3 2 6 6 O 1.35702 * 119.28792 * 179.71002 * 5 4 3 7 7 C 1.40488 * 121.42208 * 359.57303 * 5 4 3 8 8 S 1.76095 * 130.50627 * 180.13953 * 7 5 4 9 9 C 1.75515 * 91.50008 * 180.27917 * 8 7 5 10 10 C 1.32592 * 110.62309 * 0.02562 * 9 8 7 11 11 C 1.39313 * 120.14581 * 0.44117 * 7 5 4 12 12 C 1.40921 * 119.97541 * 185.19739 * 3 2 1 13 13 C 1.40363 * 120.35840 * 0.02562 * 12 3 2 14 14 H 1.08005 * 119.99701 * 134.40599 * 13 12 3 15 15 C 1.39860 * 120.00022 * 314.40219 * 13 12 3 16 16 N 1.30988 * 119.99750 * 160.64209 * 15 13 12 17 17 Si 1.86796 * 120.00127 * 340.65004 * 15 13 12 18 18 H 1.48500 * 109.47502 * 94.49845 * 17 15 13 19 19 H 1.48504 * 109.47132 * 214.50233 * 17 15 13 20 20 H 1.48505 * 109.47056 * 334.49930 * 17 15 13 21 21 H 1.08998 * 109.47189 * 182.31866 * 1 2 3 22 22 H 1.09009 * 109.47090 * 302.31563 * 1 2 3 23 23 H 1.08993 * 109.47390 * 62.31224 * 1 2 3 24 24 H 1.07995 * 119.53652 * 0.02562 * 4 3 2 25 25 H 0.96703 * 113.99681 * 269.86274 * 6 5 4 26 26 H 1.08001 * 124.68358 * 179.97438 * 9 8 7 27 27 H 1.07999 * 122.10251 * 180.02562 * 10 9 8 28 28 H 0.96999 * 120.00004 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2968 2.3653 0.1081 5 6 1.9044 3.6091 0.1058 6 8 1.1364 4.7233 0.2078 7 6 3.2991 3.7427 0.0030 8 16 4.3115 5.1833 -0.0201 9 6 5.7665 4.2144 -0.1783 10 6 5.4668 2.9232 -0.2076 11 6 4.1040 2.6111 -0.1089 12 6 3.4481 1.2847 -0.1106 13 6 4.2149 0.1143 -0.2216 14 1 5.0016 0.0521 -0.9590 15 6 3.9603 -0.9712 0.6227 16 7 4.3835 -2.1674 0.2972 17 14 3.0165 -0.7154 2.2142 18 1 1.5762 -0.9962 1.9864 19 1 3.5417 -1.6357 3.2546 20 1 3.1813 0.6893 2.6671 21 1 -0.3633 -1.0268 0.0416 22 1 -0.3634 0.5494 0.8686 23 1 -0.3634 0.4775 -0.9099 24 1 0.2222 2.2979 0.1925 25 1 0.8459 5.0799 -0.6428 26 1 6.7674 4.6149 -0.2437 27 1 6.2252 2.1599 -0.3004 28 1 4.2066 -2.9203 0.8825 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396377555.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:22 Heat of formation + Delta-G solvation = -52.253422 kcal Electronic energy + Delta-G solvation = -16120.456135 eV Core-core repulsion = 13420.848267 eV Total energy + Delta-G solvation = -2699.607868 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.93718 -39.07570 -38.01273 -35.63455 -34.36269 -31.73472 -29.71396 -28.15787 -26.47051 -24.10429 -22.97813 -21.20712 -19.94224 -19.37240 -17.95894 -17.65148 -17.15141 -16.70058 -16.22453 -15.84518 -15.46167 -14.97614 -14.67682 -14.47164 -14.03068 -13.49926 -13.47746 -13.01860 -12.76210 -12.54897 -12.35725 -12.00252 -11.80413 -11.64919 -11.40046 -11.09341 -10.88314 -9.83545 -9.11182 -8.88525 -8.37505 -6.33962 -0.13306 0.50009 0.84376 1.25645 1.28531 1.36466 1.46290 1.60576 2.19704 2.49382 2.75969 3.18190 3.53494 4.05101 4.31417 4.36310 4.46544 4.55020 4.57571 4.72175 4.85481 5.02093 5.12201 5.30961 5.43235 5.54408 5.70225 5.76231 6.20880 6.38321 6.70075 6.87932 7.06597 8.18118 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.023452 B = 0.010822 C = 0.008221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.653952 B = 2586.772694 C = 3405.202917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.007 3.993 4 C -0.159 4.159 5 C 0.041 3.959 6 O -0.496 6.496 7 C -0.160 4.160 8 S 0.079 5.921 9 C -0.225 4.225 10 C -0.102 4.102 11 C -0.145 4.145 12 C 0.081 3.919 13 C -0.460 4.460 14 H 0.066 0.934 15 C 0.076 3.924 16 N -0.837 5.837 17 Si 0.951 3.049 18 H -0.232 1.232 19 H -0.279 1.279 20 H -0.279 1.279 21 H 0.106 0.894 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.147 0.853 25 H 0.389 0.611 26 H 0.192 0.808 27 H 0.133 0.867 28 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.186 7.821 0.141 9.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.239 6.239 3 C -0.040 4.040 4 C -0.181 4.181 5 C -0.010 4.010 6 O -0.306 6.306 7 C -0.275 4.275 8 S 0.340 5.660 9 C -0.358 4.358 10 C -0.132 4.132 11 C -0.153 4.153 12 C 0.075 3.925 13 C -0.489 4.489 14 H 0.084 0.916 15 C -0.140 4.140 16 N -0.463 5.463 17 Si 0.776 3.224 18 H -0.156 1.156 19 H -0.205 1.205 20 H -0.204 1.204 21 H 0.125 0.875 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.164 0.836 25 H 0.244 0.756 26 H 0.209 0.791 27 H 0.151 0.849 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.130 8.832 0.825 10.246 hybrid contribution -0.069 -1.658 -0.177 1.668 sum -5.198 7.174 0.648 8.883 Atomic orbital electron populations 1.23162 0.78597 1.04381 1.01613 1.86124 1.21512 1.26432 1.89806 1.18707 0.91378 0.84412 1.09493 1.21034 1.00328 0.90885 1.05820 1.16922 0.85801 0.85929 1.12311 1.84762 1.69316 1.41389 1.35135 1.23074 0.97399 0.97245 1.09794 1.83362 0.96446 1.06876 1.79280 1.25310 1.02664 0.95612 1.12254 1.19846 0.94903 0.96810 1.01632 1.19263 0.93115 0.92214 1.10677 1.18092 0.89213 0.91463 0.93688 1.18909 1.16489 0.96104 1.17368 0.91568 1.26461 0.93090 0.93064 1.01434 1.69776 1.38722 1.00539 1.37252 0.85668 0.81388 0.78380 0.77009 1.15640 1.20526 1.20399 0.87518 0.92645 0.91795 0.83562 0.75555 0.79105 0.84892 0.89659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.52 113.37 1.08 1.62 15 2 O -0.32 -14.32 6.08 -90.46 -0.55 -14.87 15 3 C 0.01 0.33 5.17 22.90 0.12 0.45 15 4 C -0.16 -6.48 8.91 22.29 0.20 -6.28 15 5 C 0.04 1.68 6.72 22.86 0.15 1.83 15 6 O -0.50 -16.74 13.42 -90.23 -1.21 -17.95 15 7 C -0.16 -6.85 6.43 23.08 0.15 -6.70 15 8 S 0.08 2.75 23.26 -56.49 -1.31 1.43 15 9 C -0.23 -7.71 11.11 66.66 0.74 -6.97 15 10 C -0.10 -4.27 9.79 21.58 0.21 -4.06 15 11 C -0.15 -6.87 6.02 -19.97 -0.12 -6.99 15 12 C 0.08 4.14 4.81 -19.52 -0.09 4.04 15 13 C -0.46 -25.47 9.02 23.18 0.21 -25.26 15 14 H 0.07 3.91 8.06 -2.91 -0.02 3.88 15 15 C 0.08 4.07 4.90 85.21 0.42 4.49 15 16 N -0.84 -45.35 13.94 21.82 0.30 -45.05 15 17 Si 0.95 43.99 24.82 68.60 1.70 45.70 15 18 H -0.23 -9.92 6.00 99.48 0.60 -9.33 15 19 H -0.28 -12.09 7.11 99.48 0.71 -11.38 15 20 H -0.28 -13.80 7.11 99.48 0.71 -13.09 15 21 H 0.11 2.86 8.14 -2.39 -0.02 2.84 15 22 H 0.05 1.58 7.27 -2.38 -0.02 1.56 15 23 H 0.06 1.75 7.99 -2.39 -0.02 1.73 15 24 H 0.15 4.93 6.21 -2.91 -0.02 4.92 15 25 H 0.39 9.25 9.06 -74.05 -0.67 8.58 15 26 H 0.19 4.94 8.06 -2.91 -0.02 4.92 15 27 H 0.13 5.47 8.04 -2.91 -0.02 5.45 15 28 H 0.29 14.35 8.30 -92.71 -0.77 13.58 15 Total: -1.00 -63.35 255.25 2.42 -60.93 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.43 Total: 13.66 kcal Atomic # 6 Polarization: -46.90 SS G_CDS: 3.06 Total: -43.84 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.30 Total: -45.05 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -1.76 Total: -32.83 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.70 Total: 45.70 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.31 Total: 1.43 kcal Total: -63.35 2.42 -60.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396377555.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.674 kcal (2) G-P(sol) polarization free energy of solvation -63.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds