Wall clock time and date at job start Mon Mar 30 2020 05:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36329 * 116.99657 * 2 1 4 4 C 1.32724 * 122.65349 * 269.96770 * 3 2 1 5 5 O 1.35923 * 124.35855 * 0.02599 * 4 3 2 6 6 S 1.75290 * 111.28272 * 180.02562 * 4 3 2 7 7 C 1.75884 * 92.26130 * 0.02562 * 6 4 3 8 8 C 1.39515 * 109.89197 * 359.97438 * 7 6 4 9 9 C 1.41316 * 119.01339 * 179.97438 * 8 7 6 10 10 C 1.37860 * 120.90237 * 359.74389 * 9 8 7 11 11 C 1.37840 * 120.73438 * 0.51807 * 10 9 8 12 12 C 1.40522 * 119.89146 * 359.48711 * 11 10 9 13 13 C 1.40960 * 120.10137 * 180.27530 * 12 11 10 14 14 H 1.07996 * 119.99592 * 149.99462 * 13 12 11 15 15 C 1.39819 * 120.00112 * 329.98682 * 13 12 11 16 16 N 1.30923 * 120.00211 * 161.76421 * 15 13 12 17 17 Si 1.86803 * 120.00064 * 341.76435 * 15 13 12 18 18 H 1.48500 * 109.47017 * 95.41178 * 17 15 13 19 19 H 1.48501 * 109.47172 * 215.40951 * 17 15 13 20 20 H 1.48493 * 109.47327 * 335.41122 * 17 15 13 21 21 H 1.09001 * 109.47359 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47402 * 300.00425 * 1 2 3 23 23 H 1.09009 * 109.46650 * 60.00668 * 1 2 3 24 24 H 0.96700 * 113.99782 * 89.99313 * 5 4 3 25 25 H 1.08002 * 119.54634 * 180.02562 * 9 8 7 26 26 H 1.07994 * 119.63437 * 180.25895 * 10 9 8 27 27 H 1.08006 * 120.05568 * 179.76593 * 11 10 9 28 28 H 0.96997 * 120.00428 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0479 1.2147 0.0000 4 6 2.3735 1.8525 -1.1175 5 8 2.1327 1.3795 -2.3688 6 16 3.1541 3.3835 -0.7719 7 6 3.0278 3.1354 0.9648 8 6 2.4048 1.9146 1.2258 9 6 2.2045 1.5205 2.5680 10 6 2.6199 2.3212 3.6105 11 6 3.2320 3.5322 3.3681 12 6 3.4473 3.9557 2.0456 13 6 4.0780 5.1907 1.7926 14 1 4.6695 5.3217 0.8986 15 6 3.9378 6.2460 2.6990 16 7 4.7791 7.2487 2.6715 17 14 2.5501 6.2252 3.9494 18 1 3.0485 5.6685 5.2327 19 1 2.0597 7.6098 4.1677 20 1 1.4391 5.3808 3.4418 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.2760 1.6438 -2.7310 25 1 1.7235 0.5770 2.7799 26 1 2.4603 1.9979 4.6285 27 1 3.5497 4.1525 4.1932 28 1 4.6817 7.9810 3.3001 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396378052.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:02 Heat of formation + Delta-G solvation = -61.637034 kcal Electronic energy + Delta-G solvation = -15715.253000 eV Core-core repulsion = 13015.238228 eV Total energy + Delta-G solvation = -2700.014772 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.84578 -39.22962 -38.12750 -35.82010 -34.24239 -32.35049 -29.49874 -27.88264 -27.06850 -24.17239 -22.87183 -21.91292 -19.88885 -19.17919 -18.36803 -17.57033 -17.09596 -16.84039 -16.56875 -15.87245 -15.49851 -15.16103 -14.79641 -14.27095 -14.20159 -13.74342 -13.39620 -13.03061 -12.81299 -12.62886 -12.45998 -11.87014 -11.79257 -11.44779 -11.40354 -11.14878 -10.66302 -10.15713 -9.25076 -8.99181 -8.65268 -6.56697 -0.21087 0.47355 0.58893 1.11747 1.22013 1.28078 1.40377 1.50492 2.09727 2.50327 2.81924 3.09114 3.30712 4.18402 4.26318 4.38836 4.48179 4.49047 4.67129 4.69033 4.77971 4.90350 5.16963 5.22846 5.44196 5.65073 5.85372 6.00594 6.21833 6.24191 6.53099 6.60737 6.66341 8.08026 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.029514 B = 0.008454 C = 0.007053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.484519 B = 3311.220489 C = 3968.960771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.327 6.327 3 C 0.053 3.947 4 C 0.000 4.000 5 O -0.449 6.449 6 S 0.070 5.930 7 C -0.219 4.219 8 C -0.059 4.059 9 C -0.197 4.197 10 C -0.062 4.062 11 C -0.252 4.252 12 C 0.110 3.890 13 C -0.471 4.471 14 H 0.061 0.939 15 C 0.053 3.947 16 N -0.834 5.834 17 Si 0.965 3.035 18 H -0.249 1.249 19 H -0.276 1.276 20 H -0.252 1.252 21 H 0.121 0.879 22 H 0.045 0.955 23 H 0.054 0.946 24 H 0.407 0.593 25 H 0.128 0.872 26 H 0.142 0.858 27 H 0.112 0.888 28 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.982 -7.877 -1.882 12.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.244 6.244 3 C -0.006 4.006 4 C -0.161 4.161 5 O -0.260 6.260 6 S 0.331 5.669 7 C -0.335 4.335 8 C -0.066 4.066 9 C -0.218 4.218 10 C -0.081 4.081 11 C -0.275 4.275 12 C 0.105 3.895 13 C -0.499 4.499 14 H 0.079 0.921 15 C -0.164 4.164 16 N -0.458 5.458 17 Si 0.787 3.213 18 H -0.174 1.174 19 H -0.202 1.202 20 H -0.176 1.176 21 H 0.139 0.861 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.266 0.734 25 H 0.146 0.854 26 H 0.160 0.840 27 H 0.130 0.870 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.638 -6.918 -2.795 11.414 hybrid contribution -1.083 -0.224 0.962 1.466 sum -9.721 -7.141 -1.833 12.201 Atomic orbital electron populations 1.23251 0.77554 1.04876 1.01144 1.86130 1.21607 1.22570 1.94136 1.18914 1.02213 0.89053 0.90440 1.22348 1.08319 0.97718 0.87667 1.84844 1.43036 1.73316 1.24815 1.83972 1.66114 1.16589 1.00247 1.22488 1.13213 1.01866 0.95906 1.19069 1.00264 0.93010 0.94275 1.20532 1.10079 1.01881 0.89313 1.20839 0.95036 0.93020 0.99189 1.21040 1.12011 0.99643 0.94767 1.17222 0.89752 0.91983 0.90568 1.19345 1.27242 0.96211 1.07143 0.92119 1.26845 0.97850 0.93793 0.97910 1.69740 1.32700 1.09139 1.34252 0.85481 0.79402 0.77740 0.78666 1.17381 1.20218 1.17611 0.86109 0.93581 0.92701 0.73435 0.85442 0.83979 0.87049 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.14 113.37 1.26 1.87 15 2 O -0.33 -11.04 10.48 -88.57 -0.93 -11.97 15 3 C 0.05 2.04 5.95 23.00 0.14 2.18 15 4 C 0.00 0.01 7.48 66.65 0.50 0.51 15 5 O -0.45 -13.41 13.58 -83.93 -1.14 -14.55 15 6 S 0.07 2.94 22.89 -56.49 -1.29 1.64 15 7 C -0.22 -10.46 6.36 23.52 0.15 -10.31 15 8 C -0.06 -2.55 6.04 -20.32 -0.12 -2.67 15 9 C -0.20 -7.77 10.08 22.94 0.23 -7.54 15 10 C -0.06 -2.42 9.97 22.09 0.22 -2.20 15 11 C -0.25 -11.50 7.15 22.73 0.16 -11.34 15 12 C 0.11 5.60 5.12 -21.12 -0.11 5.49 15 13 C -0.47 -25.75 9.30 23.32 0.22 -25.53 15 14 H 0.06 3.60 8.00 -2.91 -0.02 3.58 15 15 C 0.05 2.73 5.40 85.21 0.46 3.19 15 16 N -0.83 -43.93 13.93 21.81 0.30 -43.63 15 17 Si 0.96 40.56 24.51 68.60 1.68 42.24 15 18 H -0.25 -9.67 6.71 99.48 0.67 -9.00 15 19 H -0.28 -10.88 7.11 99.48 0.71 -10.17 15 20 H -0.25 -10.92 6.87 99.48 0.68 -10.23 15 21 H 0.12 2.01 8.14 -2.39 -0.02 1.99 15 22 H 0.05 1.08 8.14 -2.39 -0.02 1.06 15 23 H 0.05 1.08 8.14 -2.38 -0.02 1.06 15 24 H 0.41 7.45 9.06 -74.06 -0.67 6.77 15 25 H 0.13 4.32 8.06 -2.91 -0.02 4.30 15 26 H 0.14 4.40 8.06 -2.91 -0.02 4.38 15 27 H 0.11 4.94 4.73 -2.91 -0.01 4.92 15 28 H 0.30 13.99 8.30 -92.71 -0.77 13.22 15 Total: -1.00 -62.93 260.70 2.21 -60.73 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.47 Total: 11.88 kcal Atomic # 6 Polarization: -49.46 SS G_CDS: 3.11 Total: -46.35 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.30 Total: -43.63 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -2.07 Total: -26.52 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 1.68 Total: 42.24 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.29 Total: 1.64 kcal Total: -62.93 2.21 -60.73 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396378052.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.909 kcal (2) G-P(sol) polarization free energy of solvation -62.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds