Wall clock time and date at job start Mon Mar 30 2020 05:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35757 * 117.00064 * 2 1 4 4 C 1.32417 * 124.31094 * 179.97438 * 3 2 1 5 5 C 1.45538 * 114.73428 * 180.02562 * 4 3 2 6 6 C 1.39812 * 111.91508 * 359.97438 * 5 4 3 7 7 C 1.40576 * 120.21095 * 180.02562 * 6 5 4 8 8 C 1.35681 * 121.03418 * 0.02562 * 7 6 5 9 9 C 1.41076 * 120.14907 * 359.96340 * 8 7 6 10 10 C 1.41041 * 120.13009 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00197 * 204.94272 * 10 9 8 12 12 C 1.39789 * 119.99717 * 24.94645 * 10 9 8 13 13 N 1.30982 * 120.00103 * 17.84817 * 12 10 9 14 14 Si 1.86802 * 119.99916 * 197.84821 * 12 10 9 15 15 H 1.48498 * 109.46833 * 59.99984 * 14 12 10 16 16 H 1.48499 * 109.47294 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47065 * 299.99956 * 14 12 10 18 18 C 1.40667 * 119.74240 * 0.02562 * 9 8 7 19 19 O 1.35568 * 120.08137 * 180.02562 * 18 9 8 20 20 S 1.75261 * 124.31310 * 0.02562 * 3 2 1 21 21 H 1.08998 * 109.47436 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47375 * 300.00606 * 1 2 3 23 23 H 1.09010 * 109.46900 * 60.00137 * 1 2 3 24 24 H 1.08001 * 122.63740 * 359.75013 * 4 3 2 25 25 H 1.08000 * 119.48336 * 180.02562 * 7 6 5 26 26 H 1.07996 * 119.92674 * 179.97438 * 8 7 6 27 27 H 0.97006 * 119.99630 * 180.02562 * 13 12 10 28 28 H 0.96707 * 113.99923 * 89.99069 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 3.3587 1.3781 0.0005 5 6 3.7945 2.7667 0.0010 6 6 2.7132 3.6530 0.0002 7 6 2.9362 5.0409 0.0000 8 6 4.1950 5.5471 0.0000 9 6 5.3076 4.6797 0.0010 10 6 6.6160 5.2063 0.0004 11 1 7.4336 4.6208 -0.3934 12 6 6.8544 6.4861 0.5096 13 7 5.9707 7.0552 1.2911 14 14 8.4335 7.3848 0.0754 15 1 8.5124 7.5638 -1.3966 16 1 8.4442 8.7144 0.7366 17 1 9.5989 6.5907 0.5407 18 6 5.1069 3.2874 0.0014 19 8 6.1710 2.4475 0.0029 20 16 1.2040 2.7471 0.0006 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 4.0521 0.5501 0.0049 25 1 2.0923 5.7149 -0.0001 26 1 4.3457 6.6165 -0.0006 27 1 6.1360 7.9435 1.6441 28 1 6.4790 2.2043 0.8868 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396378064.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:09 Heat of formation + Delta-G solvation = -44.853910 kcal Electronic energy + Delta-G solvation = -15427.029252 eV Core-core repulsion = 12727.742251 eV Total energy + Delta-G solvation = -2699.287001 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.82669 -38.19058 -35.37804 -34.66795 -32.67886 -29.32132 -28.15184 -26.33385 -25.36683 -22.37970 -21.02584 -20.09851 -18.17023 -17.22208 -16.61711 -15.66247 -15.57757 -15.03066 -15.00702 -14.26525 -13.69225 -13.54374 -12.77310 -12.56814 -12.27950 -12.09607 -11.64528 -11.42072 -11.23832 -11.03819 -10.91515 -10.60492 -10.23128 -9.82943 -9.63987 -9.12666 -9.08863 -8.28097 -7.27988 -7.04220 -6.68615 -4.49239 1.83633 2.02190 2.47992 2.72893 2.98538 3.00396 3.06226 3.37187 3.55109 3.80737 4.36052 5.17342 5.21645 5.27587 5.47891 5.74682 6.00904 6.03301 6.35239 6.49055 6.69781 6.92332 7.05278 7.21789 7.32749 7.40712 7.54148 7.76871 7.97581 8.28796 8.56739 8.65118 9.09939 9.95870 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.049429 B = 0.005930 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.333258 B = 4720.515582 C = 5201.418201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.292 6.292 3 C 0.020 3.980 4 C -0.158 4.158 5 C -0.032 4.032 6 C -0.222 4.222 7 C -0.077 4.077 8 C -0.120 4.120 9 C 0.101 3.899 10 C -0.438 4.438 11 H 0.089 0.911 12 C 0.073 3.927 13 N -0.787 5.787 14 Si 0.916 3.084 15 H -0.261 1.261 16 H -0.277 1.277 17 H -0.263 1.263 18 C -0.014 4.014 19 O -0.487 6.487 20 S -0.009 6.009 21 H 0.100 0.900 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.136 0.864 25 H 0.097 0.903 26 H 0.131 0.869 27 H 0.286 0.714 28 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.810 -4.473 -0.142 7.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.207 6.207 3 C -0.138 4.138 4 C -0.189 4.189 5 C -0.038 4.038 6 C -0.337 4.337 7 C -0.099 4.099 8 C -0.141 4.141 9 C 0.097 3.903 10 C -0.467 4.467 11 H 0.107 0.893 12 C -0.146 4.146 13 N -0.411 5.411 14 Si 0.740 3.260 15 H -0.186 1.186 16 H -0.202 1.202 17 H -0.187 1.187 18 C -0.063 4.063 19 O -0.294 6.294 20 S 0.246 5.754 21 H 0.118 0.882 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.154 0.846 25 H 0.115 0.885 26 H 0.148 0.852 27 H 0.097 0.903 28 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -7.309 -4.061 -0.612 8.384 hybrid contribution 1.813 0.121 0.497 1.884 sum -5.496 -3.940 -0.115 6.763 Atomic orbital electron populations 1.23100 0.78643 1.03711 1.01770 1.85921 1.20664 1.23792 1.90337 1.22489 0.95040 0.87558 1.08708 1.20330 0.92227 0.96890 1.09470 1.18757 0.93382 0.89574 1.02065 1.21444 0.92039 0.96783 1.23398 1.19789 0.97028 0.90715 1.02382 1.20940 0.90377 1.00263 1.02509 1.17694 0.94064 0.89581 0.88970 1.19522 0.94645 0.98866 1.33649 0.89279 1.26041 0.98879 0.97278 0.92421 1.69864 1.35038 1.15049 1.21178 0.86227 0.81275 0.78375 0.80157 1.18566 1.20216 1.18730 1.18077 0.82829 0.88362 1.17005 1.84728 1.47600 1.65834 1.31194 1.83418 1.10647 0.96501 1.84842 0.88164 0.92598 0.92606 0.84588 0.88513 0.85164 0.90349 0.79325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.23 101.05 1.03 1.33 15 2 O -0.29 -4.99 10.56 -18.98 -0.20 -5.19 15 3 C 0.02 0.39 7.10 28.81 0.20 0.59 15 4 C -0.16 -3.39 10.29 -38.60 -0.40 -3.79 15 5 C -0.03 -0.75 6.03 -105.28 -0.63 -1.39 15 6 C -0.22 -5.13 6.49 -38.11 -0.25 -5.38 15 7 C -0.08 -1.77 9.98 -39.62 -0.40 -2.17 15 8 C -0.12 -2.98 8.60 -39.42 -0.34 -3.32 15 9 C 0.10 2.63 5.57 -106.84 -0.59 2.03 15 10 C -0.44 -11.17 8.68 -37.94 -0.33 -11.50 15 11 H 0.09 2.25 7.63 -52.49 -0.40 1.85 15 12 C 0.07 1.73 5.13 -17.33 -0.09 1.64 15 13 N -0.79 -19.02 10.97 55.54 0.61 -18.41 15 14 Si 0.92 17.79 29.60 -169.99 -5.03 12.76 15 15 H -0.26 -5.09 7.11 56.52 0.40 -4.68 15 16 H -0.28 -5.22 7.11 56.52 0.40 -4.81 15 17 H -0.26 -5.07 7.11 56.52 0.40 -4.67 15 18 C -0.01 -0.35 6.81 -37.55 -0.26 -0.61 15 19 O -0.49 -11.21 12.64 -18.40 -0.23 -11.45 15 20 S -0.01 -0.18 21.86 -107.50 -2.35 -2.53 15 21 H 0.10 0.89 8.14 -51.93 -0.42 0.47 15 22 H 0.06 0.65 8.01 -51.93 -0.42 0.23 15 23 H 0.06 0.65 8.02 -51.92 -0.42 0.23 15 24 H 0.14 2.73 8.06 -52.49 -0.42 2.31 15 25 H 0.10 1.98 8.06 -52.49 -0.42 1.56 15 26 H 0.13 3.24 6.17 -52.49 -0.32 2.91 15 27 H 0.29 6.26 8.30 -40.82 -0.34 5.92 15 28 H 0.35 6.75 9.06 45.56 0.41 7.17 15 LS Contribution 263.29 15.07 3.97 3.97 Total: -1.00 -28.08 263.29 -6.83 -34.91 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -1.55 Total: 8.48 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -2.04 Total: -22.55 kcal Atomic # 7 Polarization: -19.02 SS G_CDS: 0.61 Total: -18.41 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.43 Total: -16.63 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Atomic # 16 Polarization: -0.18 SS G_CDS: -2.35 Total: -2.53 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.08 -6.83 -34.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396378064.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.943 kcal (2) G-P(sol) polarization free energy of solvation -28.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds