Wall clock time and date at job start Mon Mar 30 2020 05:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35919 * 116.99751 * 2 1 4 4 C 1.38861 * 119.50774 * 359.97438 * 3 2 1 5 5 C 1.39262 * 121.43847 * 180.23252 * 4 3 2 6 6 S 1.76070 * 130.47389 * 180.30038 * 5 4 3 7 7 C 1.75507 * 91.55907 * 179.57383 * 6 5 4 8 8 O 1.35556 * 124.70311 * 179.80496 * 7 6 5 9 9 C 1.33683 * 110.58806 * 359.83103 * 7 6 5 10 10 C 1.39768 * 115.66566 * 359.97438 * 9 7 6 11 11 C 1.47948 * 129.09263 * 180.02562 * 10 9 7 12 12 C 1.40529 * 120.37160 * 0.02562 * 11 10 9 13 13 H 1.07998 * 120.00674 * 330.01066 * 12 11 10 14 14 C 1.39870 * 119.99887 * 150.01899 * 12 11 10 15 15 N 1.30918 * 120.00296 * 161.74305 * 14 12 11 16 16 Si 1.86807 * 119.99802 * 341.73971 * 14 12 11 17 17 H 1.48500 * 109.46830 * 95.40169 * 16 14 12 18 18 H 1.48497 * 109.47072 * 215.40461 * 16 14 12 19 19 H 1.48503 * 109.46968 * 335.40424 * 16 14 12 20 20 C 1.37923 * 119.50735 * 179.97438 * 3 2 1 21 21 H 1.08997 * 109.47075 * 60.00153 * 1 2 3 22 22 H 1.09006 * 109.46859 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47083 * 300.00013 * 1 2 3 24 24 H 1.07992 * 119.27507 * 359.95722 * 4 3 2 25 25 H 0.96703 * 114.00048 * 270.02398 * 8 7 6 26 26 H 1.07997 * 122.16440 * 179.97438 * 9 7 6 27 27 H 0.97005 * 120.00155 * 179.97438 * 15 14 12 28 28 H 1.08005 * 119.95555 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2797 2.3691 -0.0005 5 6 1.8697 3.6305 -0.0054 6 16 1.1407 5.2332 -0.0001 7 6 2.7180 6.0031 0.0006 8 8 2.9227 7.3431 0.0004 9 6 3.6894 5.0847 0.0007 10 6 3.2637 3.7534 0.0009 11 6 4.0734 2.5151 0.0015 12 6 5.4770 2.5839 0.0027 13 1 5.9772 3.4194 -0.4644 14 6 6.2263 1.5702 0.6086 15 7 7.4947 1.4298 0.3163 16 14 5.4173 0.4165 1.8351 17 1 4.9821 -0.8205 1.1383 18 1 6.3893 0.0679 2.9023 19 1 4.2372 1.0853 2.4396 20 6 3.4239 1.2715 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 0.2027 2.2896 -0.0017 25 1 2.9822 7.7318 -0.8831 26 1 4.7352 5.3540 0.0007 27 1 8.0145 0.7270 0.7369 28 1 4.0037 0.3602 0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396378169.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:55 Heat of formation + Delta-G solvation = -45.048975 kcal Electronic energy + Delta-G solvation = -15638.357662 eV Core-core repulsion = 12939.062203 eV Total energy + Delta-G solvation = -2699.295459 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.19557 -37.84357 -36.64308 -34.17872 -32.62228 -30.60814 -28.28956 -26.05660 -25.09414 -22.89714 -21.12781 -19.79992 -18.49046 -17.58423 -16.76572 -15.73131 -15.36617 -15.16403 -15.05688 -14.68998 -14.27469 -13.33319 -12.97358 -12.63133 -12.40720 -12.24323 -11.95484 -11.40325 -11.24020 -11.11883 -10.91143 -10.73762 -10.18389 -9.85311 -9.65449 -9.42911 -9.13967 -8.52272 -7.33967 -7.25285 -6.87343 -4.79589 1.58199 2.22716 2.34429 2.76237 3.00188 3.03265 3.20785 3.28416 3.80972 3.95041 4.18119 4.87981 5.08844 5.45846 5.52726 5.71869 5.89633 6.05415 6.18369 6.33100 6.59365 6.63569 6.74020 6.94165 7.12433 7.31121 7.39322 7.54588 7.87515 7.97027 8.12275 8.37060 8.38948 9.63936 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.017468 B = 0.010764 C = 0.006994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.572895 B = 2600.701275 C = 4002.342270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.325 6.325 3 C 0.202 3.798 4 C -0.314 4.314 5 C -0.024 4.024 6 S -0.001 6.001 7 C -0.070 4.070 8 O -0.454 6.454 9 C -0.067 4.067 10 C -0.191 4.191 11 C 0.156 3.844 12 C -0.400 4.400 13 H 0.102 0.898 14 C 0.082 3.918 15 N -0.774 5.774 16 Si 0.918 3.082 17 H -0.262 1.262 18 H -0.287 1.287 19 H -0.240 1.240 20 C -0.294 4.294 21 H 0.051 0.949 22 H 0.088 0.912 23 H 0.050 0.950 24 H 0.106 0.894 25 H 0.370 0.630 26 H 0.136 0.864 27 H 0.295 0.705 28 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.385 0.471 -0.512 7.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.239 6.239 3 C 0.155 3.845 4 C -0.341 4.341 5 C -0.140 4.140 6 S 0.258 5.742 7 C -0.228 4.228 8 O -0.261 6.261 9 C -0.099 4.099 10 C -0.197 4.197 11 C 0.150 3.850 12 C -0.426 4.426 13 H 0.120 0.880 14 C -0.142 4.142 15 N -0.395 5.395 16 Si 0.743 3.257 17 H -0.187 1.187 18 H -0.214 1.214 19 H -0.162 1.162 20 C -0.315 4.315 21 H 0.069 0.931 22 H 0.107 0.893 23 H 0.069 0.931 24 H 0.124 0.876 25 H 0.223 0.777 26 H 0.153 0.847 27 H 0.105 0.895 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.421 0.809 0.108 8.461 hybrid contribution 0.983 -0.709 -0.104 1.217 sum -7.438 0.100 0.004 7.438 Atomic orbital electron populations 1.22884 0.79823 1.02501 1.01157 1.86043 1.20421 1.28465 1.88953 1.18419 0.91619 0.82378 0.92129 1.19440 0.97593 0.89593 1.27453 1.21817 0.95601 0.94829 1.01776 1.83655 1.10415 0.98569 1.81545 1.21577 0.93323 0.85871 1.22038 1.84843 1.92435 1.16415 1.32383 1.20179 0.99555 0.91544 0.98587 1.18649 0.91178 0.92728 1.17143 1.18148 0.92190 0.88075 0.86630 1.19527 0.89688 1.06037 1.27323 0.87993 1.26405 0.94768 0.96441 0.96599 1.69703 1.08516 1.27882 1.33391 0.86142 0.79933 0.80222 0.79361 1.18706 1.21406 1.16235 1.19916 0.90559 0.97386 1.23678 0.93064 0.89338 0.93120 0.87594 0.77714 0.84656 0.89454 0.86677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.79 101.05 0.99 1.45 15 2 O -0.33 -6.47 10.48 -19.49 -0.20 -6.68 15 3 C 0.20 4.53 6.65 -39.47 -0.26 4.26 15 4 C -0.31 -6.77 9.02 -38.97 -0.35 -7.12 15 5 C -0.02 -0.55 6.47 -38.56 -0.25 -0.80 15 6 S 0.00 -0.02 23.29 -107.50 -2.50 -2.52 15 7 C -0.07 -1.40 7.55 29.14 0.22 -1.18 15 8 O -0.45 -7.84 13.64 -18.36 -0.25 -8.09 15 9 C -0.07 -1.46 9.80 -40.61 -0.40 -1.86 15 10 C -0.19 -4.53 6.02 -104.71 -0.63 -5.16 15 11 C 0.16 3.85 5.28 -104.28 -0.55 3.30 15 12 C -0.40 -10.08 9.29 -38.11 -0.35 -10.43 15 13 H 0.10 2.63 7.83 -52.49 -0.41 2.21 15 14 C 0.08 2.00 5.40 -17.33 -0.09 1.90 15 15 N -0.77 -18.84 13.93 55.54 0.77 -18.07 15 16 Si 0.92 19.98 24.52 -169.99 -4.17 15.81 15 17 H -0.26 -5.59 6.71 56.52 0.38 -5.21 15 18 H -0.29 -5.92 7.11 56.52 0.40 -5.52 15 19 H -0.24 -5.49 6.87 56.52 0.39 -5.10 15 20 C -0.29 -7.08 7.05 -38.92 -0.27 -7.36 15 21 H 0.05 0.69 7.62 -51.93 -0.40 0.29 15 22 H 0.09 0.99 8.14 -51.93 -0.42 0.57 15 23 H 0.05 0.69 7.63 -51.93 -0.40 0.30 15 24 H 0.11 2.00 6.15 -52.49 -0.32 1.68 15 25 H 0.37 4.46 9.06 45.56 0.41 4.88 15 26 H 0.14 2.82 7.83 -52.49 -0.41 2.41 15 27 H 0.29 6.42 8.30 -40.82 -0.34 6.08 15 28 H 0.12 2.76 4.74 -52.48 -0.25 2.51 15 LS Contribution 256.20 15.07 3.86 3.86 Total: -1.00 -27.76 256.20 -5.81 -33.57 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -1.37 Total: 5.10 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: -1.96 Total: -22.99 kcal Atomic # 7 Polarization: -18.84 SS G_CDS: 0.77 Total: -18.07 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.45 Total: -14.76 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.17 Total: 15.81 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.50 Total: -2.52 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.76 -5.81 -33.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396378169.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.478 kcal (2) G-P(sol) polarization free energy of solvation -27.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds