Wall clock time and date at job start Mon Mar 30 2020 05:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35919 * 116.99751 * 2 1 4 4 C 1.38861 * 119.50774 * 359.97438 * 3 2 1 5 5 C 1.39262 * 121.43847 * 180.23252 * 4 3 2 6 6 S 1.76070 * 130.47389 * 180.30038 * 5 4 3 7 7 C 1.75507 * 91.55907 * 179.57383 * 6 5 4 8 8 O 1.35556 * 124.70311 * 179.80496 * 7 6 5 9 9 C 1.33683 * 110.58806 * 359.83103 * 7 6 5 10 10 C 1.39768 * 115.66566 * 359.97438 * 9 7 6 11 11 C 1.47948 * 129.09263 * 180.02562 * 10 9 7 12 12 C 1.40529 * 120.37160 * 0.02562 * 11 10 9 13 13 H 1.07998 * 120.00674 * 330.01066 * 12 11 10 14 14 C 1.39870 * 119.99887 * 150.01899 * 12 11 10 15 15 N 1.30918 * 120.00296 * 161.74305 * 14 12 11 16 16 Si 1.86807 * 119.99802 * 341.73971 * 14 12 11 17 17 H 1.48500 * 109.46830 * 95.40169 * 16 14 12 18 18 H 1.48497 * 109.47072 * 215.40461 * 16 14 12 19 19 H 1.48503 * 109.46968 * 335.40424 * 16 14 12 20 20 C 1.37923 * 119.50735 * 179.97438 * 3 2 1 21 21 H 1.08997 * 109.47075 * 60.00153 * 1 2 3 22 22 H 1.09006 * 109.46859 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47083 * 300.00013 * 1 2 3 24 24 H 1.07992 * 119.27507 * 359.95722 * 4 3 2 25 25 H 0.96703 * 114.00048 * 270.02398 * 8 7 6 26 26 H 1.07997 * 122.16440 * 179.97438 * 9 7 6 27 27 H 0.97005 * 120.00155 * 179.97438 * 15 14 12 28 28 H 1.08005 * 119.95555 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2797 2.3691 -0.0005 5 6 1.8697 3.6305 -0.0054 6 16 1.1407 5.2332 -0.0001 7 6 2.7180 6.0031 0.0006 8 8 2.9227 7.3431 0.0004 9 6 3.6894 5.0847 0.0007 10 6 3.2637 3.7534 0.0009 11 6 4.0734 2.5151 0.0015 12 6 5.4770 2.5839 0.0027 13 1 5.9772 3.4194 -0.4644 14 6 6.2263 1.5702 0.6086 15 7 7.4947 1.4298 0.3163 16 14 5.4173 0.4165 1.8351 17 1 4.9821 -0.8205 1.1383 18 1 6.3893 0.0679 2.9023 19 1 4.2372 1.0853 2.4396 20 6 3.4239 1.2715 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 0.2027 2.2896 -0.0017 25 1 2.9822 7.7318 -0.8831 26 1 4.7352 5.3540 0.0007 27 1 8.0145 0.7270 0.7369 28 1 4.0037 0.3602 0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396378169.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:55 Heat of formation + Delta-G solvation = -64.242800 kcal Electronic energy + Delta-G solvation = -15639.189969 eV Core-core repulsion = 12939.062203 eV Total energy + Delta-G solvation = -2700.127766 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.81067 -39.39345 -38.20746 -35.94757 -34.29150 -32.36163 -29.80038 -27.48166 -26.84204 -24.58485 -22.80861 -21.46117 -20.18160 -19.15830 -18.43360 -17.31261 -17.01113 -16.75834 -16.52979 -16.35295 -15.78249 -15.07382 -14.54446 -14.25927 -14.03897 -13.89713 -13.60395 -13.12072 -12.79385 -12.54765 -12.52610 -12.34032 -11.90947 -11.61057 -11.22819 -11.11443 -10.76991 -10.25470 -9.14265 -8.90931 -8.54639 -6.63775 -0.09548 0.55849 0.59821 1.08102 1.25987 1.28983 1.44929 1.57261 2.06689 2.37576 2.54840 3.27606 3.40997 4.19931 4.32766 4.36562 4.44728 4.53350 4.67895 4.72019 4.92301 4.94746 5.04379 5.20102 5.41098 5.59824 5.65290 5.79228 6.02520 6.38461 6.55604 6.66909 6.71343 7.90094 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.017468 B = 0.010764 C = 0.006994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.572895 B = 2600.701275 C = 4002.342270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.198 3.802 4 C -0.306 4.306 5 C -0.056 4.056 6 S 0.063 5.937 7 C -0.045 4.045 8 O -0.456 6.456 9 C -0.101 4.101 10 C -0.208 4.208 11 C 0.143 3.857 12 C -0.435 4.435 13 H 0.079 0.921 14 C 0.059 3.941 15 N -0.807 5.807 16 Si 0.963 3.037 17 H -0.258 1.258 18 H -0.268 1.268 19 H -0.260 1.260 20 C -0.315 4.315 21 H 0.062 0.938 22 H 0.123 0.877 23 H 0.060 0.940 24 H 0.136 0.864 25 H 0.401 0.599 26 H 0.132 0.868 27 H 0.305 0.695 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.021 0.914 -0.239 10.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.253 6.253 3 C 0.150 3.850 4 C -0.332 4.332 5 C -0.172 4.172 6 S 0.322 5.678 7 C -0.204 4.204 8 O -0.266 6.266 9 C -0.132 4.132 10 C -0.214 4.214 11 C 0.138 3.862 12 C -0.461 4.461 13 H 0.097 0.903 14 C -0.163 4.163 15 N -0.429 5.429 16 Si 0.786 3.214 17 H -0.183 1.183 18 H -0.194 1.194 19 H -0.184 1.184 20 C -0.337 4.337 21 H 0.081 0.919 22 H 0.141 0.859 23 H 0.078 0.922 24 H 0.154 0.846 25 H 0.258 0.742 26 H 0.150 0.850 27 H 0.116 0.884 28 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.061 1.257 0.359 11.138 hybrid contribution 1.531 -0.638 -0.249 1.677 sum -9.531 0.619 0.110 9.551 Atomic orbital electron populations 1.23305 0.76758 1.05270 1.02100 1.86026 1.23528 1.27212 1.88503 1.18468 0.91328 0.83731 0.91467 1.19776 0.99034 0.88958 1.25391 1.22194 0.95624 0.96974 1.02367 1.83391 1.08417 0.95618 1.80369 1.21738 0.93725 0.86747 1.18148 1.84748 1.92263 1.14662 1.34975 1.20214 1.00135 0.91487 1.01367 1.18913 0.92144 0.93156 1.17209 1.18324 0.92200 0.89113 0.86612 1.19447 0.90339 1.06438 1.29896 0.90314 1.26852 0.95048 0.97094 0.97258 1.69695 1.09205 1.29218 1.34795 0.85484 0.78807 0.78841 0.78259 1.18282 1.19380 1.18368 1.19986 0.91819 0.96907 1.25005 0.91948 0.85880 0.92175 0.84631 0.74167 0.85014 0.88411 0.87347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.79 113.37 1.11 1.61 15 2 O -0.34 -12.86 10.48 -92.64 -0.97 -13.83 15 3 C 0.20 8.70 6.65 22.34 0.15 8.85 15 4 C -0.31 -12.50 9.02 22.67 0.20 -12.30 15 5 C -0.06 -2.40 6.47 22.93 0.15 -2.25 15 6 S 0.06 2.23 23.29 -56.49 -1.32 0.92 15 7 C -0.04 -1.68 7.55 66.79 0.50 -1.18 15 8 O -0.46 -14.22 13.64 -88.62 -1.21 -15.42 15 9 C -0.10 -4.37 9.80 21.61 0.21 -4.15 15 10 C -0.21 -9.92 6.02 -19.92 -0.12 -10.04 15 11 C 0.14 7.31 5.28 -19.64 -0.10 7.20 15 12 C -0.43 -23.11 9.29 23.22 0.22 -22.90 15 13 H 0.08 4.38 7.83 -2.91 -0.02 4.36 15 14 C 0.06 2.96 5.40 85.22 0.46 3.42 15 15 N -0.81 -40.73 13.93 21.82 0.30 -40.42 15 16 Si 0.96 41.99 24.52 68.60 1.68 43.68 15 17 H -0.26 -10.91 6.71 99.48 0.67 -10.24 15 18 H -0.27 -10.66 7.11 99.48 0.71 -9.95 15 19 H -0.26 -12.05 6.87 99.48 0.68 -11.36 15 20 C -0.32 -15.44 7.05 22.70 0.16 -15.28 15 21 H 0.06 1.45 7.62 -2.39 -0.02 1.44 15 22 H 0.12 2.26 8.14 -2.38 -0.02 2.24 15 23 H 0.06 1.42 7.63 -2.39 -0.02 1.40 15 24 H 0.14 4.61 6.15 -2.91 -0.02 4.60 15 25 H 0.40 8.10 9.06 -74.06 -0.67 7.43 15 26 H 0.13 5.67 7.83 -2.91 -0.02 5.65 15 27 H 0.30 13.64 8.30 -92.70 -0.77 12.87 15 28 H 0.11 5.33 4.74 -2.91 -0.01 5.31 15 Total: -1.00 -60.29 256.20 1.92 -58.37 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.48 Total: 13.74 kcal Atomic # 6 Polarization: -49.96 SS G_CDS: 2.94 Total: -47.02 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.30 Total: -40.42 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -2.18 Total: -29.26 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.68 Total: 43.68 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -1.32 Total: 0.92 kcal Total: -60.29 1.92 -58.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396378169.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.873 kcal (2) G-P(sol) polarization free energy of solvation -60.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds