Wall clock time and date at job start Mon Mar 30 2020 05:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35883 * 116.99862 * 2 1 4 4 C 1.39441 * 119.97465 * 359.71939 * 3 2 1 5 5 C 1.35792 * 120.61995 * 179.73329 * 4 3 2 6 6 C 1.42127 * 120.63054 * 0.59138 * 5 4 3 7 7 C 1.39712 * 128.41633 * 179.67286 * 6 5 4 8 8 C 1.37001 * 115.04607 * 179.97438 * 7 6 5 9 9 C 1.39903 * 124.84261 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00035 * 0.02562 * 9 8 7 11 11 C 1.40088 * 119.99750 * 180.02562 * 9 8 7 12 12 N 1.30825 * 120.00293 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99570 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47409 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47143 * 120.00302 * 13 11 9 16 16 H 1.48498 * 109.46947 * 239.99726 * 13 11 9 17 17 S 1.75466 * 110.31681 * 0.02562 * 8 7 6 18 18 C 1.40301 * 118.69599 * 359.67305 * 6 5 4 19 19 C 1.38663 * 119.97125 * 179.97438 * 3 2 1 20 20 O 1.36064 * 119.91149 * 359.97438 * 19 3 2 21 21 H 1.09001 * 109.46558 * 60.00272 * 1 2 3 22 22 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47187 * 300.00224 * 1 2 3 24 24 H 1.07998 * 119.68886 * 0.02562 * 4 3 2 25 25 H 1.08002 * 119.69056 * 180.25982 * 5 4 3 26 26 H 1.08002 * 122.47861 * 0.02562 * 7 6 5 27 27 H 0.96993 * 120.00020 * 180.02562 * 12 11 9 28 28 H 0.96700 * 114.00562 * 89.99558 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2859 2.3798 -0.0059 5 6 1.8887 3.5966 -0.0006 6 6 3.3060 3.7027 -0.0014 7 6 4.0900 4.8591 -0.0028 8 6 5.4428 4.6426 -0.0028 9 6 6.4135 5.6501 -0.0046 10 1 6.1147 6.6879 -0.0056 11 6 7.7732 5.3127 -0.0049 12 7 8.1352 4.0556 -0.0032 13 14 9.0692 6.6580 -0.0066 14 1 8.4044 7.9858 -0.0079 15 1 9.9174 6.5296 1.2056 16 1 9.9162 6.5278 -1.2193 17 16 5.7844 2.9215 -0.0018 18 6 4.0696 2.5257 -0.0009 19 6 3.4307 1.2827 0.0005 20 8 4.1694 0.1400 0.0016 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.2078 2.3169 -0.0101 25 1 1.2854 4.4925 -0.0010 26 1 3.6614 5.8504 -0.0029 27 1 9.0766 3.8220 -0.0031 28 1 4.3833 -0.1910 -0.8815 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396378183.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:56 Heat of formation + Delta-G solvation = -80.500352 kcal Electronic energy + Delta-G solvation = -15417.494091 eV Core-core repulsion = 12716.661344 eV Total energy + Delta-G solvation = -2700.832746 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.00873 -38.72735 -37.95378 -36.38311 -34.27375 -30.78136 -30.40038 -28.20991 -26.72975 -23.89386 -23.16140 -21.15461 -20.01901 -19.04337 -18.42036 -17.46835 -16.75332 -16.64536 -16.37132 -15.85043 -15.07660 -14.95420 -14.60977 -13.97435 -13.96336 -13.74248 -13.16006 -13.10455 -12.76870 -12.44119 -12.29672 -11.94965 -11.87748 -11.63621 -11.51037 -10.92382 -10.81983 -10.06369 -8.93664 -8.91101 -8.21740 -6.51061 0.23445 0.50880 1.27669 1.32866 1.37277 1.56208 1.80276 1.89521 2.13996 2.64567 2.77132 3.16623 3.44643 4.05890 4.30674 4.47459 4.51715 4.65857 4.75612 4.83352 4.91889 5.01698 5.25902 5.43415 5.51377 5.61855 5.87075 5.94063 6.10865 6.39445 6.55290 6.57058 6.99159 7.96577 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.051895 B = 0.006065 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.417939 B = 4615.704415 C = 5137.440383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.333 6.333 3 C 0.029 3.971 4 C -0.160 4.160 5 C -0.126 4.126 6 C -0.022 4.022 7 C -0.386 4.386 8 C 0.019 3.981 9 C -0.413 4.413 10 H 0.104 0.896 11 C 0.015 3.985 12 N -0.803 5.803 13 Si 1.015 2.985 14 H -0.252 1.252 15 H -0.260 1.260 16 H -0.258 1.258 17 S 0.143 5.857 18 C -0.285 4.285 19 C 0.108 3.892 20 O -0.499 6.499 21 H 0.062 0.938 22 H 0.119 0.881 23 H 0.058 0.942 24 H 0.157 0.843 25 H 0.134 0.866 26 H 0.109 0.891 27 H 0.312 0.688 28 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.607 -2.216 -1.705 6.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.248 6.248 3 C -0.018 4.018 4 C -0.180 4.180 5 C -0.146 4.146 6 C -0.030 4.030 7 C -0.411 4.411 8 C -0.100 4.100 9 C -0.446 4.446 10 H 0.122 0.878 11 C -0.203 4.203 12 N -0.429 5.429 13 Si 0.833 3.167 14 H -0.175 1.175 15 H -0.184 1.184 16 H -0.182 1.182 17 S 0.403 5.597 18 C -0.401 4.401 19 C 0.059 3.941 20 O -0.309 6.309 21 H 0.080 0.920 22 H 0.137 0.863 23 H 0.076 0.924 24 H 0.175 0.825 25 H 0.152 0.848 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -4.063 -3.329 -1.095 5.366 hybrid contribution -0.936 1.324 -0.472 1.689 sum -4.999 -2.006 -1.567 5.610 Atomic orbital electron populations 1.23268 0.77172 1.05117 1.01829 1.85986 1.22787 1.25932 1.90111 1.18861 0.90481 0.85447 1.06996 1.20727 1.00453 0.90782 1.06044 1.20747 0.91962 0.97994 1.03895 1.18197 0.94151 0.91707 0.98932 1.19713 0.91710 0.96727 1.32912 1.21871 0.96080 0.96412 0.95664 1.19667 0.90545 0.94957 1.39455 0.87800 1.27317 1.02225 0.99711 0.91058 1.68655 1.21867 1.19861 1.32561 0.84623 0.75684 0.76947 0.79475 1.17486 1.18398 1.18235 1.84741 0.95706 1.00616 1.78606 1.23947 1.03348 0.95677 1.17094 1.16949 0.86758 0.83835 1.06596 1.84772 1.72864 1.39339 1.33930 0.91981 0.86330 0.92384 0.82513 0.84835 0.87256 0.87423 0.75305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.81 113.37 1.11 1.58 15 2 O -0.33 -11.67 10.26 -77.83 -0.80 -12.47 15 3 C 0.03 1.17 6.70 22.66 0.15 1.32 15 4 C -0.16 -5.82 8.94 21.99 0.20 -5.62 15 5 C -0.13 -5.20 10.03 22.67 0.23 -4.97 15 6 C -0.02 -1.09 5.85 -21.46 -0.13 -1.22 15 7 C -0.39 -20.29 10.14 22.34 0.23 -20.06 15 8 C 0.02 1.03 6.11 22.38 0.14 1.16 15 9 C -0.41 -20.96 9.26 23.12 0.21 -20.75 15 10 H 0.10 4.97 7.85 -2.91 -0.02 4.94 15 11 C 0.02 0.69 5.50 85.29 0.47 1.16 15 12 N -0.80 -38.25 10.58 21.86 0.23 -38.02 15 13 Si 1.01 34.02 29.56 68.60 2.03 36.05 15 14 H -0.25 -8.20 7.11 99.48 0.71 -7.49 15 15 H -0.26 -8.34 7.11 99.48 0.71 -7.63 15 16 H -0.26 -8.22 7.11 99.48 0.71 -7.51 15 17 S 0.14 7.51 20.09 -56.49 -1.13 6.37 15 18 C -0.29 -14.50 6.41 23.14 0.15 -14.35 15 19 C 0.11 5.00 6.74 22.74 0.15 5.15 15 20 O -0.50 -21.20 13.24 -79.88 -1.06 -22.26 15 21 H 0.06 1.23 7.64 -2.39 -0.02 1.21 15 22 H 0.12 1.97 8.14 -2.39 -0.02 1.95 15 23 H 0.06 1.20 7.67 -2.39 -0.02 1.18 15 24 H 0.16 4.28 6.27 -2.91 -0.02 4.26 15 25 H 0.13 4.71 8.06 -2.91 -0.02 4.69 15 26 H 0.11 5.45 8.06 -2.91 -0.02 5.43 15 27 H 0.31 13.08 8.30 -92.71 -0.77 12.31 15 28 H 0.39 13.00 9.07 -74.06 -0.67 12.32 15 Total: -1.00 -63.98 261.60 2.72 -61.27 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.54 Total: 25.66 kcal Atomic # 6 Polarization: -59.51 SS G_CDS: 2.91 Total: -56.60 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.23 Total: -38.02 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -1.86 Total: -34.73 kcal Atomic # 14 Polarization: 34.02 SS G_CDS: 2.03 Total: 36.05 kcal Atomic # 16 Polarization: 7.51 SS G_CDS: -1.13 Total: 6.37 kcal Total: -63.98 2.72 -61.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396378183.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.233 kcal (2) G-P(sol) polarization free energy of solvation -63.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds