Wall clock time and date at job start Mon Mar 30 2020 05:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35266 * 116.99433 * 2 1 4 4 S 1.75180 * 124.57100 * 5.80193 * 3 2 1 5 5 C 1.75889 * 92.75454 * 180.02562 * 4 3 2 6 6 C 1.39745 * 129.65716 * 179.43603 * 5 4 3 7 7 C 1.38138 * 120.43582 * 179.97438 * 6 5 4 8 8 O 1.35906 * 120.00459 * 179.97438 * 7 6 5 9 9 C 1.39118 * 119.99447 * 0.02562 * 7 6 5 10 10 C 1.37250 * 120.18557 * 359.97438 * 9 7 6 11 11 C 1.39303 * 110.63667 * 359.67018 * 5 4 3 12 12 C 1.37454 * 124.56371 * 185.28123 * 3 2 1 13 13 C 1.40671 * 123.23567 * 359.97438 * 12 3 2 14 14 H 1.07998 * 119.99478 * 132.58949 * 13 12 3 15 15 C 1.39519 * 120.00224 * 312.60215 * 13 12 3 16 16 N 1.31276 * 120.00030 * 174.18348 * 15 13 12 17 17 Si 1.86801 * 120.00020 * 354.17375 * 15 13 12 18 18 H 1.48501 * 109.46868 * 96.06953 * 17 15 13 19 19 H 1.48504 * 109.47334 * 216.06863 * 17 15 13 20 20 H 1.48496 * 109.47346 * 336.07297 * 17 15 13 21 21 H 1.09008 * 109.46684 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47453 * 300.00045 * 1 2 3 23 23 H 1.09000 * 109.47416 * 60.00295 * 1 2 3 24 24 H 1.08004 * 119.78776 * 359.95594 * 6 5 4 25 25 H 0.96708 * 114.00312 * 270.02905 * 8 7 6 26 26 H 1.08004 * 119.90638 * 179.97438 * 9 7 6 27 27 H 1.08008 * 119.73520 * 180.02562 * 10 9 7 28 28 H 0.97006 * 120.00162 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0430 1.2053 0.0000 4 16 1.2154 2.7424 0.1458 5 6 2.7158 3.6555 0.0513 6 6 2.9226 5.0371 0.0853 7 6 4.1998 5.5559 -0.0043 8 8 4.3908 6.9010 0.0291 9 6 5.2903 4.7013 -0.1299 10 6 5.1017 3.3423 -0.1645 11 6 3.8053 2.7974 -0.0796 12 6 3.4013 1.3885 -0.1042 13 6 4.3156 0.3262 -0.2235 14 1 5.0884 0.3611 -0.9772 15 6 4.2241 -0.7724 0.6315 16 7 5.0024 -1.8136 0.4480 17 14 2.9943 -0.7618 2.0376 18 1 1.7551 -1.4634 1.6165 19 1 3.5804 -1.4547 3.2131 20 1 2.6699 0.6410 2.4009 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 2.0784 5.7038 0.1819 25 1 4.3707 7.3230 -0.8408 26 1 6.2882 5.1085 -0.2002 27 1 5.9537 2.6855 -0.2618 28 1 4.9390 -2.5773 1.0428 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396379136.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:45 Heat of formation + Delta-G solvation = -35.026681 kcal Electronic energy + Delta-G solvation = -15800.074473 eV Core-core repulsion = 13101.213613 eV Total energy + Delta-G solvation = -2698.860860 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.27438 -37.99627 -36.67598 -33.87814 -32.09145 -30.44132 -28.08142 -26.61996 -25.19700 -22.42609 -21.83860 -19.72880 -18.38456 -17.41957 -17.09819 -15.54602 -15.46162 -15.32454 -14.84784 -14.34910 -14.05978 -13.41488 -13.10172 -12.91054 -12.47630 -12.12599 -11.60764 -11.50382 -11.40636 -10.97483 -10.87178 -10.35606 -9.98681 -9.85216 -9.57771 -9.53766 -8.93124 -8.63994 -7.37829 -6.80279 -6.58306 -4.33033 1.43545 1.72906 2.24698 2.78000 3.06454 3.26662 3.42665 3.47924 4.18458 4.20030 4.48098 4.57521 5.08173 5.32680 5.50100 5.61447 5.66895 5.84631 5.90147 5.95513 6.19522 6.34921 6.73051 6.78370 6.90261 7.20704 7.39836 7.45348 7.92038 8.11471 8.36116 8.62248 8.99193 10.39654 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.026018 B = 0.009564 C = 0.007579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.930180 B = 2926.842501 C = 3693.451596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.264 6.264 3 C -0.136 4.136 4 S -0.009 6.009 5 C -0.119 4.119 6 C -0.116 4.116 7 C 0.093 3.907 8 O -0.500 6.500 9 C -0.155 4.155 10 C -0.056 4.056 11 C -0.043 4.043 12 C 0.048 3.952 13 C -0.434 4.434 14 H 0.091 0.909 15 C 0.093 3.907 16 N -0.837 5.837 17 Si 0.918 3.082 18 H -0.259 1.259 19 H -0.301 1.301 20 H -0.260 1.260 21 H 0.090 0.910 22 H 0.041 0.959 23 H 0.049 0.951 24 H 0.121 0.879 25 H 0.382 0.618 26 H 0.125 0.875 27 H 0.134 0.866 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.782 9.014 -1.089 10.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.180 6.180 3 C -0.294 4.294 4 S 0.250 5.750 5 C -0.234 4.234 6 C -0.140 4.140 7 C 0.046 3.954 8 O -0.309 6.309 9 C -0.176 4.176 10 C -0.076 4.076 11 C -0.051 4.051 12 C 0.038 3.962 13 C -0.468 4.468 14 H 0.109 0.891 15 C -0.121 4.121 16 N -0.466 5.466 17 Si 0.747 3.253 18 H -0.185 1.185 19 H -0.230 1.230 20 H -0.184 1.184 21 H 0.109 0.891 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.138 0.862 25 H 0.236 0.764 26 H 0.143 0.857 27 H 0.151 0.849 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.082 8.793 -0.292 10.695 hybrid contribution 0.521 -0.296 0.082 0.605 sum -5.560 8.497 -0.209 10.157 Atomic orbital electron populations 1.22880 0.80966 1.02801 1.00451 1.85844 1.18277 1.23166 1.90715 1.22813 0.93182 0.85543 1.27813 1.83166 1.08546 0.99793 1.83508 1.21968 0.96719 0.96093 1.08611 1.20508 0.96525 0.92440 1.04536 1.18012 0.91657 0.82532 1.03164 1.84830 1.94632 1.17498 1.33928 1.21063 0.98433 0.93262 1.04869 1.20895 0.96125 0.93829 0.96704 1.19490 0.92513 0.93246 0.99901 1.17100 0.89197 0.90814 0.99121 1.18446 1.12729 0.99229 1.16358 0.89113 1.25804 0.94710 0.93407 0.98188 1.69812 1.35843 1.04819 1.36103 0.85979 0.80622 0.80071 0.78617 1.18524 1.23005 1.18401 0.89108 0.94000 0.93271 0.86151 0.76355 0.85667 0.84864 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.15 101.05 1.03 1.49 15 2 O -0.26 -6.24 6.01 -17.49 -0.11 -6.34 15 3 C -0.14 -3.28 5.27 30.45 0.16 -3.12 15 4 S -0.01 -0.19 21.84 -107.50 -2.35 -2.53 15 5 C -0.12 -2.46 6.41 -38.62 -0.25 -2.71 15 6 C -0.12 -2.06 10.00 -39.05 -0.39 -2.45 15 7 C 0.09 1.53 6.70 -39.29 -0.26 1.26 15 8 O -0.50 -6.85 13.50 -19.44 -0.26 -7.12 15 9 C -0.15 -2.59 9.95 -39.61 -0.39 -2.99 15 10 C -0.06 -1.10 9.81 -38.94 -0.38 -1.48 15 11 C -0.04 -0.96 6.00 -105.13 -0.63 -1.59 15 12 C 0.05 1.21 4.76 -105.90 -0.50 0.71 15 13 C -0.43 -11.98 9.39 -38.19 -0.36 -12.34 15 14 H 0.09 2.59 8.06 -52.49 -0.42 2.17 15 15 C 0.09 2.59 5.39 -17.31 -0.09 2.49 15 16 N -0.84 -23.61 13.95 55.53 0.77 -22.84 15 17 Si 0.92 22.85 24.15 -169.99 -4.11 18.74 15 18 H -0.26 -6.23 6.32 56.52 0.36 -5.87 15 19 H -0.30 -7.32 7.11 56.52 0.40 -6.92 15 20 H -0.26 -6.66 6.56 56.52 0.37 -6.29 15 21 H 0.09 1.39 8.14 -51.92 -0.42 0.97 15 22 H 0.04 0.70 7.91 -51.93 -0.41 0.29 15 23 H 0.05 0.79 8.12 -51.93 -0.42 0.37 15 24 H 0.12 1.88 8.06 -52.48 -0.42 1.45 15 25 H 0.38 3.23 9.06 45.56 0.41 3.64 15 26 H 0.13 1.75 8.06 -52.48 -0.42 1.32 15 27 H 0.13 2.53 8.03 -52.48 -0.42 2.11 15 28 H 0.28 7.26 8.31 -40.82 -0.34 6.93 15 LS Contribution 257.02 15.07 3.87 3.87 Total: -1.00 -30.77 257.02 -5.99 -36.76 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -1.74 Total: 0.17 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -2.08 Total: -20.72 kcal Atomic # 7 Polarization: -23.61 SS G_CDS: 0.77 Total: -22.84 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.37 Total: -13.46 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.11 Total: 18.74 kcal Atomic # 16 Polarization: -0.19 SS G_CDS: -2.35 Total: -2.53 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.77 -5.99 -36.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396379136.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.737 kcal (2) G-P(sol) polarization free energy of solvation -30.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds