Wall clock time and date at job start Mon Mar 30 2020 05:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35266 * 116.99433 * 2 1 4 4 S 1.75180 * 124.57100 * 5.80193 * 3 2 1 5 5 C 1.75889 * 92.75454 * 180.02562 * 4 3 2 6 6 C 1.39745 * 129.65716 * 179.43603 * 5 4 3 7 7 C 1.38138 * 120.43582 * 179.97438 * 6 5 4 8 8 O 1.35906 * 120.00459 * 179.97438 * 7 6 5 9 9 C 1.39118 * 119.99447 * 0.02562 * 7 6 5 10 10 C 1.37250 * 120.18557 * 359.97438 * 9 7 6 11 11 C 1.39303 * 110.63667 * 359.67018 * 5 4 3 12 12 C 1.37454 * 124.56371 * 185.28123 * 3 2 1 13 13 C 1.40671 * 123.23567 * 359.97438 * 12 3 2 14 14 H 1.07998 * 119.99478 * 132.58949 * 13 12 3 15 15 C 1.39519 * 120.00224 * 312.60215 * 13 12 3 16 16 N 1.31276 * 120.00030 * 174.18348 * 15 13 12 17 17 Si 1.86801 * 120.00020 * 354.17375 * 15 13 12 18 18 H 1.48501 * 109.46868 * 96.06953 * 17 15 13 19 19 H 1.48504 * 109.47334 * 216.06863 * 17 15 13 20 20 H 1.48496 * 109.47346 * 336.07297 * 17 15 13 21 21 H 1.09008 * 109.46684 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47453 * 300.00045 * 1 2 3 23 23 H 1.09000 * 109.47416 * 60.00295 * 1 2 3 24 24 H 1.08004 * 119.78776 * 359.95594 * 6 5 4 25 25 H 0.96708 * 114.00312 * 270.02905 * 8 7 6 26 26 H 1.08004 * 119.90638 * 179.97438 * 9 7 6 27 27 H 1.08008 * 119.73520 * 180.02562 * 10 9 7 28 28 H 0.97006 * 120.00162 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0430 1.2053 0.0000 4 16 1.2154 2.7424 0.1458 5 6 2.7158 3.6555 0.0513 6 6 2.9226 5.0371 0.0853 7 6 4.1998 5.5559 -0.0043 8 8 4.3908 6.9010 0.0291 9 6 5.2903 4.7013 -0.1299 10 6 5.1017 3.3423 -0.1645 11 6 3.8053 2.7974 -0.0796 12 6 3.4013 1.3885 -0.1042 13 6 4.3156 0.3262 -0.2235 14 1 5.0884 0.3611 -0.9772 15 6 4.2241 -0.7724 0.6315 16 7 5.0024 -1.8136 0.4480 17 14 2.9943 -0.7618 2.0376 18 1 1.7551 -1.4634 1.6165 19 1 3.5804 -1.4547 3.2131 20 1 2.6699 0.6410 2.4009 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 2.0784 5.7038 0.1819 25 1 4.3707 7.3230 -0.8408 26 1 6.2882 5.1085 -0.2002 27 1 5.9537 2.6855 -0.2618 28 1 4.9390 -2.5773 1.0428 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396379136.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:45 Heat of formation + Delta-G solvation = -57.101127 kcal Electronic energy + Delta-G solvation = -15801.031693 eV Core-core repulsion = 13101.213613 eV Total energy + Delta-G solvation = -2699.818080 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.71424 -39.68877 -38.05626 -35.65534 -33.88392 -31.91905 -29.64636 -28.27707 -26.89570 -23.96871 -23.35796 -21.48771 -19.75061 -19.27267 -18.71623 -17.21026 -17.02614 -16.73053 -16.44448 -16.05977 -15.49705 -15.03154 -14.93169 -14.46839 -14.11942 -13.64910 -13.19943 -13.07008 -12.99933 -12.69977 -12.44195 -12.21862 -11.77697 -11.47403 -11.24992 -11.10257 -10.86272 -10.21083 -8.94142 -8.69610 -8.44182 -6.36389 -0.09527 0.27314 0.61001 1.03227 1.20916 1.33341 1.46965 1.57671 2.25042 2.64021 2.78155 3.08527 3.33948 3.93114 4.16860 4.25684 4.29807 4.34335 4.49678 4.58504 4.74683 4.99718 5.14273 5.31220 5.39505 5.54802 5.60578 5.82419 6.25438 6.35994 6.70566 6.92158 6.97450 8.42595 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.026018 B = 0.009564 C = 0.007579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.930180 B = 2926.842501 C = 3693.451596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.295 6.295 3 C -0.129 4.129 4 S 0.044 5.956 5 C -0.136 4.136 6 C -0.116 4.116 7 C 0.116 3.884 8 O -0.497 6.497 9 C -0.140 4.140 10 C -0.072 4.072 11 C -0.080 4.080 12 C 0.012 3.988 13 C -0.459 4.459 14 H 0.056 0.944 15 C 0.055 3.945 16 N -0.885 5.885 17 Si 0.965 3.035 18 H -0.246 1.246 19 H -0.297 1.297 20 H -0.272 1.272 21 H 0.116 0.884 22 H 0.054 0.946 23 H 0.066 0.934 24 H 0.148 0.852 25 H 0.412 0.588 26 H 0.158 0.842 27 H 0.124 0.876 28 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.520 12.029 -0.669 13.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.212 6.212 3 C -0.286 4.286 4 S 0.303 5.697 5 C -0.251 4.251 6 C -0.140 4.140 7 C 0.069 3.931 8 O -0.310 6.310 9 C -0.161 4.161 10 C -0.092 4.092 11 C -0.088 4.088 12 C 0.002 3.998 13 C -0.493 4.493 14 H 0.074 0.926 15 C -0.154 4.154 16 N -0.517 5.517 17 Si 0.793 3.207 18 H -0.171 1.171 19 H -0.225 1.225 20 H -0.197 1.197 21 H 0.134 0.866 22 H 0.073 0.927 23 H 0.085 0.915 24 H 0.166 0.834 25 H 0.271 0.729 26 H 0.176 0.824 27 H 0.142 0.858 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.835 11.837 0.101 14.195 hybrid contribution 0.976 -0.898 -0.160 1.336 sum -6.859 10.938 -0.059 12.911 Atomic orbital electron populations 1.23284 0.77988 1.05112 1.01889 1.85792 1.21443 1.23514 1.90424 1.23260 0.93939 0.87454 1.23971 1.82807 1.07328 0.96482 1.83112 1.22227 0.96231 0.97314 1.09315 1.20801 0.98139 0.91313 1.03769 1.18006 0.90914 0.83794 1.00371 1.84770 1.94335 1.15542 1.36341 1.21372 1.00359 0.91846 1.02516 1.20964 0.95048 0.95301 0.97844 1.19504 0.94407 0.92210 1.02677 1.17365 0.89815 0.91965 1.00662 1.18376 1.13302 1.00934 1.16720 0.92558 1.26374 0.96027 0.93213 0.99782 1.69865 1.38133 1.05829 1.37836 0.85290 0.79573 0.79211 0.76648 1.17130 1.22514 1.19684 0.86595 0.92696 0.91527 0.83431 0.72910 0.82428 0.85774 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.43 10.15 113.37 1.15 1.58 15 2 O -0.30 -13.71 6.01 -85.50 -0.51 -14.23 15 3 C -0.13 -6.15 5.27 67.63 0.36 -5.79 15 4 S 0.04 1.69 21.84 -56.49 -1.23 0.46 15 5 C -0.14 -5.36 6.41 22.89 0.15 -5.21 15 6 C -0.12 -3.68 10.00 22.61 0.23 -3.46 15 7 C 0.12 3.33 6.70 22.46 0.15 3.48 15 8 O -0.50 -10.87 13.50 -92.49 -1.25 -12.12 15 9 C -0.14 -4.28 9.95 22.25 0.22 -4.06 15 10 C -0.07 -2.82 9.81 22.69 0.22 -2.59 15 11 C -0.08 -3.61 6.00 -20.20 -0.12 -3.73 15 12 C 0.01 0.64 4.76 -20.69 -0.10 0.54 15 13 C -0.46 -26.83 9.39 23.17 0.22 -26.61 15 14 H 0.06 3.52 8.06 -2.91 -0.02 3.50 15 15 C 0.06 3.19 5.39 85.08 0.46 3.65 15 16 N -0.88 -52.62 13.95 21.77 0.30 -52.32 15 17 Si 0.97 48.08 24.15 68.60 1.66 49.73 15 18 H -0.25 -11.50 6.32 99.48 0.63 -10.87 15 19 H -0.30 -14.24 7.11 99.48 0.71 -13.53 15 20 H -0.27 -13.86 6.56 99.48 0.65 -13.21 15 21 H 0.12 3.23 8.14 -2.38 -0.02 3.21 15 22 H 0.05 1.68 7.91 -2.39 -0.02 1.66 15 23 H 0.07 1.97 8.12 -2.39 -0.02 1.95 15 24 H 0.15 3.84 8.06 -2.91 -0.02 3.82 15 25 H 0.41 4.49 9.06 -74.05 -0.67 3.82 15 26 H 0.16 3.76 8.06 -2.91 -0.02 3.74 15 27 H 0.12 4.95 8.03 -2.91 -0.02 4.93 15 28 H 0.28 15.45 8.31 -92.70 -0.77 14.68 15 Total: -1.00 -69.28 257.02 2.29 -66.99 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: 0.40 Total: 3.69 kcal Atomic # 6 Polarization: -45.14 SS G_CDS: 2.93 Total: -42.21 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.30 Total: -52.32 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -1.76 Total: -26.35 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 1.66 Total: 49.73 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -1.23 Total: 0.46 kcal Total: -69.28 2.29 -66.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396379136.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.891 kcal (2) G-P(sol) polarization free energy of solvation -69.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds