Wall clock time and date at job start Mon Mar 30 2020 05:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35864 * 116.99792 * 2 1 4 4 C 1.35723 * 119.87675 * 0.02562 * 3 2 1 5 5 C 1.41852 * 120.82907 * 179.97438 * 4 3 2 6 6 C 1.40698 * 128.56510 * 180.02562 * 5 4 3 7 7 O 1.36155 * 122.11812 * 359.97438 * 6 5 4 8 8 C 1.32838 * 115.76411 * 179.97438 * 6 5 4 9 9 S 1.75457 * 110.86090 * 359.97438 * 8 6 5 10 10 C 1.40441 * 119.09346 * 359.97438 * 5 4 3 11 11 C 1.38762 * 120.23741 * 359.97438 * 10 5 4 12 12 C 1.40394 * 120.05310 * 359.78050 * 11 10 5 13 13 C 1.40849 * 120.22628 * 180.25703 * 12 11 10 14 14 H 1.08003 * 119.99565 * 205.06029 * 13 12 11 15 15 C 1.39843 * 120.00541 * 25.05742 * 13 12 11 16 16 N 1.30937 * 119.99766 * 17.73576 * 15 13 12 17 17 Si 1.86795 * 120.00449 * 197.73945 * 15 13 12 18 18 H 1.48506 * 109.47039 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47211 * 119.99787 * 17 15 13 20 20 H 1.48498 * 109.47200 * 239.99935 * 17 15 13 21 21 H 1.08996 * 109.46803 * 299.99668 * 1 2 3 22 22 H 1.09002 * 109.47358 * 59.99708 * 1 2 3 23 23 H 1.08998 * 109.46719 * 179.97438 * 1 2 3 24 24 H 1.08000 * 119.59064 * 359.95213 * 4 3 2 25 25 H 0.96698 * 114.00068 * 90.00130 * 7 6 5 26 26 H 1.08000 * 124.56840 * 179.97438 * 8 6 5 27 27 H 1.07995 * 119.96872 * 180.02562 * 11 10 5 28 28 H 0.96998 * 120.00063 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 1.3041 2.3472 0.0005 5 6 1.9269 3.6217 0.0011 6 6 1.3237 4.8928 0.0022 7 8 -0.0285 5.0523 0.0023 8 6 2.1569 5.9274 0.0030 9 16 3.8257 5.3856 0.0032 10 6 3.3294 3.6964 0.0016 11 6 4.0909 2.5364 0.0022 12 6 3.4609 1.2817 0.0068 13 6 4.2303 0.1020 0.0128 14 1 3.8161 -0.8148 -0.3799 15 6 5.5306 0.1177 0.5272 16 7 5.9150 1.0982 1.3053 17 14 6.7192 -1.2599 0.1044 18 1 6.0451 -2.2397 -0.7849 19 1 7.9048 -0.6953 -0.5890 20 1 7.1523 -1.9401 1.3513 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.2261 2.2806 0.0002 25 1 -0.4191 5.0977 0.8857 26 1 1.8486 6.9624 0.0035 27 1 5.1690 2.5989 0.0030 28 1 6.8168 1.1090 1.6624 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396379188.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:24 Heat of formation + Delta-G solvation = -63.556961 kcal Electronic energy + Delta-G solvation = -15711.937775 eV Core-core repulsion = 13011.839749 eV Total energy + Delta-G solvation = -2700.098026 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.92716 -39.48583 -37.69412 -35.91886 -33.66235 -31.09815 -30.41669 -28.15459 -26.91902 -23.89749 -23.00525 -21.52409 -19.59712 -18.95987 -17.95298 -17.69404 -16.98027 -16.63997 -16.33364 -15.77928 -15.53118 -14.72252 -14.66948 -13.99841 -13.89247 -13.67693 -13.29676 -12.86883 -12.74690 -12.40548 -12.29662 -12.18617 -11.95199 -11.58596 -11.25952 -11.19023 -10.78760 -10.09049 -9.10269 -8.76209 -8.26741 -6.33146 0.03305 0.87426 0.91299 1.26243 1.32340 1.40002 1.55886 1.66942 2.18037 2.59291 2.75719 3.45376 3.61123 4.04828 4.23811 4.43671 4.45762 4.68788 4.75278 4.89055 5.04928 5.07449 5.22610 5.30620 5.59969 5.67076 5.77648 6.01102 6.29163 6.58438 6.70986 6.85807 7.01797 8.18677 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022218 B = 0.008739 C = 0.006399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.919455 B = 3203.219613 C = 4374.441442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.333 6.333 3 C 0.037 3.963 4 C -0.147 4.147 5 C -0.217 4.217 6 C 0.133 3.867 7 O -0.493 6.493 8 C -0.285 4.285 9 S 0.057 5.943 10 C -0.112 4.112 11 C -0.174 4.174 12 C 0.086 3.914 13 C -0.449 4.449 14 H 0.086 0.914 15 C 0.032 3.968 16 N -0.805 5.805 17 Si 0.989 3.011 18 H -0.256 1.256 19 H -0.262 1.262 20 H -0.262 1.262 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.118 0.882 24 H 0.131 0.869 25 H 0.402 0.598 26 H 0.184 0.816 27 H 0.114 0.886 28 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.063 1.819 -0.009 5.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.247 6.247 3 C -0.008 4.008 4 C -0.169 4.169 5 C -0.223 4.223 6 C 0.077 3.923 7 O -0.305 6.305 8 C -0.418 4.418 9 S 0.316 5.684 10 C -0.227 4.227 11 C -0.201 4.201 12 C 0.080 3.920 13 C -0.477 4.477 14 H 0.104 0.896 15 C -0.185 4.185 16 N -0.430 5.430 17 Si 0.808 3.192 18 H -0.179 1.179 19 H -0.186 1.186 20 H -0.187 1.187 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.137 0.863 24 H 0.149 0.851 25 H 0.259 0.741 26 H 0.202 0.798 27 H 0.132 0.868 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.433 2.539 -0.455 4.294 hybrid contribution -1.101 -0.934 0.522 1.536 sum -4.534 1.605 0.067 4.810 Atomic orbital electron populations 1.23165 0.78191 1.04707 1.01144 1.86005 1.21865 1.27005 1.89860 1.18807 0.92307 0.84176 1.05486 1.20361 0.98910 0.90312 1.07285 1.17965 0.92126 0.93829 1.18361 1.16979 0.83725 0.89984 1.01618 1.84764 1.15904 1.95134 1.34700 1.25012 0.95289 1.02947 1.18567 1.83439 1.06315 0.97021 1.81590 1.22372 0.96343 0.97409 1.06540 1.20198 0.98366 0.88899 1.12596 1.17330 0.88713 0.94090 0.91830 1.19770 0.98087 0.96375 1.33474 0.89581 1.26901 0.99971 0.99851 0.91810 1.69910 1.20306 1.31821 1.20914 0.85049 0.77174 0.77500 0.79446 1.17915 1.18603 1.18671 0.92863 0.92918 0.86349 0.85120 0.74055 0.79843 0.86789 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 9.80 113.37 1.11 1.81 15 2 O -0.33 -14.74 9.76 -92.02 -0.90 -15.64 15 3 C 0.04 1.84 6.66 22.54 0.15 1.99 15 4 C -0.15 -6.69 8.93 22.58 0.20 -6.48 15 5 C -0.22 -10.06 5.89 -21.25 -0.13 -10.18 15 6 C 0.13 5.26 6.70 21.69 0.15 5.41 15 7 O -0.49 -16.12 13.51 -95.32 -1.29 -17.41 15 8 C -0.28 -10.36 11.05 66.64 0.74 -9.62 15 9 S 0.06 2.30 23.29 -56.49 -1.32 0.99 15 10 C -0.11 -5.50 6.45 22.93 0.15 -5.35 15 11 C -0.17 -9.36 8.71 22.92 0.20 -9.16 15 12 C 0.09 4.69 5.57 -21.26 -0.12 4.57 15 13 C -0.45 -23.74 8.69 23.30 0.20 -23.54 15 14 H 0.09 4.47 7.63 -2.91 -0.02 4.45 15 15 C 0.03 1.56 5.13 85.21 0.44 2.00 15 16 N -0.81 -40.76 10.98 21.81 0.24 -40.52 15 17 Si 0.99 36.66 29.59 68.60 2.03 38.69 15 18 H -0.26 -9.33 7.11 99.48 0.71 -8.63 15 19 H -0.26 -9.30 7.11 99.48 0.71 -8.59 15 20 H -0.26 -9.24 7.11 99.48 0.71 -8.53 15 21 H 0.05 1.53 7.63 -2.39 -0.02 1.51 15 22 H 0.05 1.52 7.63 -2.39 -0.02 1.50 15 23 H 0.12 2.83 8.14 -2.39 -0.02 2.81 15 24 H 0.13 5.07 6.14 -2.91 -0.02 5.05 15 25 H 0.40 8.93 9.07 -74.06 -0.67 8.26 15 26 H 0.18 5.36 8.06 -2.91 -0.02 5.34 15 27 H 0.11 6.33 6.17 -2.91 -0.02 6.31 15 28 H 0.30 13.30 8.30 -92.71 -0.77 12.53 15 Total: -1.00 -62.83 260.81 2.40 -60.43 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.54 Total: 22.01 kcal Atomic # 6 Polarization: -51.64 SS G_CDS: 3.09 Total: -48.55 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.24 Total: -40.52 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -2.19 Total: -33.05 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.69 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.32 Total: 0.99 kcal Total: -62.83 2.40 -60.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396379188.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.128 kcal (2) G-P(sol) polarization free energy of solvation -62.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds