Wall clock time and date at job start Mon Mar 30 2020 05:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36150 * 117.00527 * 2 1 4 4 C 1.32176 * 122.61232 * 0.02562 * 3 2 1 5 5 S 1.75286 * 111.34053 * 179.97438 * 4 3 2 6 6 C 1.75896 * 92.23845 * 0.02562 * 5 4 3 7 7 C 1.39455 * 109.81530 * 359.97438 * 6 5 4 8 8 C 1.41272 * 119.05755 * 180.02562 * 7 6 5 9 9 C 1.38348 * 120.85869 * 359.95188 * 8 7 6 10 10 O 1.35970 * 119.68001 * 180.02562 * 9 8 7 11 11 C 1.38260 * 120.63976 * 0.04593 * 9 8 7 12 12 C 1.40363 * 119.83830 * 359.97438 * 11 9 8 13 13 C 1.40908 * 120.06921 * 180.02562 * 12 11 9 14 14 H 1.07995 * 120.00006 * 154.37922 * 13 12 11 15 15 C 1.39854 * 120.00146 * 334.37952 * 13 12 11 16 16 N 1.30917 * 119.99699 * 342.55311 * 15 13 12 17 17 Si 1.86795 * 120.00335 * 162.55168 * 15 13 12 18 18 H 1.48506 * 109.46846 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47469 * 119.99818 * 17 15 13 20 20 H 1.48502 * 109.47421 * 240.00260 * 17 15 13 21 21 H 1.09000 * 109.46683 * 300.00362 * 1 2 3 22 22 H 1.09003 * 109.46998 * 59.99332 * 1 2 3 23 23 H 1.09000 * 109.47425 * 179.97438 * 1 2 3 24 24 H 1.07997 * 124.32774 * 0.02562 * 4 3 2 25 25 H 1.07997 * 119.56819 * 179.97438 * 8 7 6 26 26 H 0.96700 * 114.00054 * 270.02191 * 10 9 8 27 27 H 1.07999 * 120.08332 * 179.97438 * 11 9 8 28 28 H 0.97001 * 119.99351 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0472 1.2131 0.0000 4 6 1.3787 2.3533 0.0005 5 16 2.4645 3.7293 0.0011 6 6 3.8869 2.6945 -0.0002 7 6 3.4973 1.3555 -0.0004 8 6 4.4913 0.3516 -0.0008 9 6 5.8345 0.6831 -0.0020 10 8 6.7711 -0.3026 -0.0029 11 6 6.2336 2.0068 -0.0019 12 6 5.2695 3.0269 -0.0010 13 6 5.6709 4.3776 -0.0014 14 1 5.0159 5.1354 -0.4053 15 6 6.9173 4.7369 0.5212 16 7 7.5609 3.9102 1.3061 17 14 7.6639 6.3964 0.0992 18 1 6.7436 7.1392 -0.7989 19 1 7.8746 7.1758 1.3456 20 1 8.9667 6.1938 -0.5841 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5140 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 0.3013 2.4276 0.0013 25 1 4.1988 -0.6880 -0.0006 26 1 7.0426 -0.5880 0.8802 27 1 7.2846 2.2553 -0.0024 28 1 8.4257 4.1593 1.6683 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396379257.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:08 Heat of formation + Delta-G solvation = -47.755925 kcal Electronic energy + Delta-G solvation = -15561.962580 eV Core-core repulsion = 12862.549738 eV Total energy + Delta-G solvation = -2699.412842 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.20415 -37.97036 -35.90537 -34.24809 -31.97224 -29.57090 -27.68865 -27.24653 -25.46588 -22.07801 -21.25410 -19.92947 -18.04547 -16.60942 -16.41121 -16.26442 -15.35375 -15.16490 -15.02094 -14.20563 -13.85111 -13.47061 -12.88775 -12.48706 -12.18588 -11.74463 -11.56817 -11.32037 -11.21613 -11.04564 -10.83403 -10.48682 -10.42217 -9.83602 -9.56713 -9.36732 -9.22185 -8.07139 -7.37004 -6.99300 -6.54559 -4.53304 1.83807 2.46930 2.58848 2.93498 3.00335 3.06076 3.14852 3.38037 3.76061 3.82749 4.36616 5.09249 5.26987 5.32370 5.35710 5.53266 5.64164 6.08555 6.30317 6.42796 6.73466 6.79272 6.96398 7.13817 7.25442 7.55848 7.69645 7.84749 7.91144 8.18266 8.56566 8.59430 8.79206 9.96770 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.025341 B = 0.008134 C = 0.006281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.665422 B = 3441.318664 C = 4456.545622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.309 6.309 3 C 0.122 3.878 4 C -0.326 4.326 5 S 0.066 5.934 6 C -0.197 4.197 7 C -0.036 4.036 8 C -0.222 4.222 9 C 0.125 3.875 10 O -0.511 6.511 11 C -0.185 4.185 12 C 0.153 3.847 13 C -0.449 4.449 14 H 0.085 0.915 15 C 0.077 3.923 16 N -0.780 5.780 17 Si 0.912 3.088 18 H -0.257 1.257 19 H -0.272 1.272 20 H -0.269 1.269 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.093 0.907 24 H 0.152 0.848 25 H 0.104 0.896 26 H 0.376 0.624 27 H 0.132 0.868 28 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.184 -1.909 -0.002 6.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.223 6.223 3 C 0.065 3.935 4 C -0.460 4.460 5 S 0.326 5.674 6 C -0.312 4.312 7 C -0.043 4.043 8 C -0.244 4.244 9 C 0.080 3.920 10 O -0.320 6.320 11 C -0.209 4.209 12 C 0.147 3.853 13 C -0.478 4.478 14 H 0.103 0.897 15 C -0.143 4.143 16 N -0.404 5.404 17 Si 0.736 3.264 18 H -0.181 1.181 19 H -0.197 1.197 20 H -0.194 1.194 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.112 0.888 24 H 0.169 0.831 25 H 0.122 0.878 26 H 0.230 0.770 27 H 0.150 0.850 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.255 -0.518 -0.468 6.294 hybrid contribution 0.249 -0.798 0.475 0.961 sum -6.007 -1.316 0.006 6.149 Atomic orbital electron populations 1.22931 0.79507 1.03057 1.00931 1.86049 1.20159 1.26783 1.89269 1.18833 0.91127 0.83747 0.99809 1.24532 1.02978 0.96902 1.21578 1.83396 0.94809 1.07143 1.82092 1.22453 0.97221 0.93463 1.18072 1.17922 0.88098 0.93194 1.05065 1.20310 0.90910 0.96786 1.16443 1.18056 0.86537 0.87149 1.00214 1.84738 1.59181 1.55454 1.32613 1.21360 1.00316 0.89813 1.09362 1.16764 0.86541 0.93804 0.88198 1.19512 1.00979 0.93050 1.34235 0.89692 1.25934 0.96332 0.99642 0.92381 1.69848 1.13369 1.36576 1.20636 0.86174 0.79615 0.81096 0.79508 1.18064 1.19702 1.19389 0.93195 0.93209 0.88843 0.83074 0.87827 0.77033 0.84996 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.92 101.05 1.00 1.41 15 2 O -0.31 -5.78 10.57 -20.22 -0.21 -5.99 15 3 C 0.12 2.58 6.85 -38.53 -0.26 2.32 15 4 C -0.33 -6.28 9.94 28.81 0.29 -6.00 15 5 S 0.07 1.40 22.82 -107.50 -2.45 -1.06 15 6 C -0.20 -4.90 6.36 -37.61 -0.24 -5.14 15 7 C -0.04 -0.86 6.04 -105.31 -0.64 -1.49 15 8 C -0.22 -5.28 10.01 -38.39 -0.38 -5.66 15 9 C 0.13 3.00 6.66 -39.53 -0.26 2.74 15 10 O -0.51 -10.74 13.48 -19.65 -0.26 -11.00 15 11 C -0.18 -4.76 8.59 -38.77 -0.33 -5.09 15 12 C 0.15 4.01 5.58 -106.56 -0.60 3.42 15 13 C -0.45 -11.50 8.81 -37.97 -0.33 -11.83 15 14 H 0.09 2.12 7.75 -52.49 -0.41 1.71 15 15 C 0.08 1.85 5.12 -17.34 -0.09 1.76 15 16 N -0.78 -19.14 10.99 55.54 0.61 -18.53 15 17 Si 0.91 17.93 29.59 -169.99 -5.03 12.90 15 18 H -0.26 -5.04 7.11 56.52 0.40 -4.63 15 19 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 20 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 21 H 0.05 0.59 7.83 -51.93 -0.41 0.18 15 22 H 0.05 0.59 7.84 -51.93 -0.41 0.18 15 23 H 0.09 0.93 8.14 -51.93 -0.42 0.51 15 24 H 0.15 2.38 6.90 -52.49 -0.36 2.02 15 25 H 0.10 2.31 8.06 -52.49 -0.42 1.89 15 26 H 0.38 6.05 9.06 45.56 0.41 6.46 15 27 H 0.13 3.47 6.19 -52.49 -0.32 3.15 15 28 H 0.28 6.28 8.30 -40.82 -0.34 5.94 15 LS Contribution 262.73 15.07 3.96 3.96 Total: -1.00 -28.80 262.73 -6.72 -35.52 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -1.47 Total: 7.78 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: -1.85 Total: -23.58 kcal Atomic # 7 Polarization: -19.14 SS G_CDS: 0.61 Total: -18.53 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.48 Total: -16.99 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.45 Total: -1.06 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.80 -6.72 -35.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396379257.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.241 kcal (2) G-P(sol) polarization free energy of solvation -28.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds