Wall clock time and date at job start Mon Mar 30 2020 05:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35697 * 116.99850 * 2 1 4 4 C 1.39335 * 120.05833 * 90.00145 * 3 2 1 5 5 S 1.76053 * 130.32523 * 359.97227 * 4 3 2 6 6 C 1.75476 * 91.56912 * 180.02562 * 5 4 3 7 7 O 1.35561 * 124.65993 * 179.97438 * 6 5 4 8 8 C 1.33421 * 110.68241 * 0.02562 * 6 5 4 9 9 C 1.40078 * 120.13952 * 179.97438 * 4 3 2 10 10 C 1.42286 * 119.05321 * 359.97438 * 9 4 3 11 11 C 1.35125 * 121.00763 * 0.02562 * 10 9 4 12 12 C 1.41024 * 120.06119 * 270.21419 * 3 2 1 13 13 C 1.40800 * 120.24872 * 0.02562 * 12 3 2 14 14 H 1.08004 * 119.99631 * 330.15484 * 13 12 3 15 15 C 1.39728 * 120.00309 * 150.15942 * 13 12 3 16 16 N 1.31025 * 120.00358 * 161.84251 * 15 13 12 17 17 Si 1.86799 * 119.99835 * 341.84109 * 15 13 12 18 18 H 1.48497 * 109.47469 * 95.41432 * 17 15 13 19 19 H 1.48502 * 109.47491 * 215.41446 * 17 15 13 20 20 H 1.48503 * 109.47018 * 335.41040 * 17 15 13 21 21 H 1.08992 * 109.47013 * 60.00082 * 1 2 3 22 22 H 1.08999 * 109.47081 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47317 * 299.99754 * 1 2 3 24 24 H 0.96700 * 114.00043 * 270.01710 * 7 6 5 25 25 H 1.08000 * 122.14199 * 179.97438 * 8 6 5 26 26 H 1.07999 * 119.50296 * 180.02562 * 10 9 4 27 27 H 1.08000 * 119.79140 * 179.97438 * 11 10 9 28 28 H 0.96999 * 119.99754 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 2.3619 1.8309 1.2060 5 16 2.0930 1.3046 2.8643 6 6 2.8356 2.7625 3.4985 7 8 2.9781 3.0444 4.8168 8 6 3.2397 3.5560 2.5049 9 6 2.9983 3.0788 1.2080 10 6 3.3137 3.6955 -0.0349 11 6 3.0083 3.0961 -1.2068 12 6 2.3617 1.8406 -1.2205 13 6 2.0405 1.2215 -2.4437 14 1 2.0133 0.1440 -2.5127 15 6 1.7572 2.0011 -3.5681 16 7 1.8090 1.4689 -4.7643 17 14 1.3045 3.8021 -3.3661 18 1 2.5180 4.6401 -3.5406 19 1 0.2936 4.1761 -4.3875 20 1 0.7420 4.0219 -2.0094 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 2.2323 3.5271 5.1986 25 1 3.7224 4.5048 2.6874 26 1 3.8048 4.6574 -0.0418 27 1 3.2564 3.5822 -2.1388 28 1 1.6119 2.0100 -5.5448 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396379294.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:58 Heat of formation + Delta-G solvation = -42.657504 kcal Electronic energy + Delta-G solvation = -15780.741903 eV Core-core repulsion = 13081.550146 eV Total energy + Delta-G solvation = -2699.191757 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.02160 -37.72632 -36.36913 -34.61930 -32.80406 -29.50324 -28.92816 -26.15224 -24.76521 -22.73971 -21.09927 -20.24294 -18.44192 -17.50058 -16.77097 -15.69886 -15.37850 -15.15408 -14.58940 -14.23261 -14.17726 -13.59026 -13.19395 -12.80183 -12.43207 -12.06064 -11.90787 -11.58149 -11.12742 -11.07968 -10.63823 -10.47519 -9.99559 -9.91389 -9.62775 -9.41202 -8.89165 -8.62316 -7.55955 -7.33562 -6.95806 -4.70012 1.45167 2.16901 2.25431 2.74574 2.78358 2.92579 3.02623 3.13735 3.68249 4.15737 4.71008 4.71770 5.16353 5.73257 5.92723 6.00395 6.06217 6.11905 6.29899 6.32183 6.42367 6.52879 6.68788 6.89108 7.09870 7.29327 7.44815 7.60961 7.81412 7.96495 8.11729 8.38989 8.73727 9.65535 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.030884 B = 0.008358 C = 0.007015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.390623 B = 3349.114736 C = 3990.390437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.318 6.318 3 C -0.013 4.013 4 C -0.063 4.063 5 S 0.017 5.983 6 C -0.057 4.057 7 O -0.457 6.457 8 C -0.090 4.090 9 C -0.199 4.199 10 C -0.039 4.039 11 C -0.202 4.202 12 C 0.092 3.908 13 C -0.394 4.394 14 H 0.106 0.894 15 C 0.078 3.922 16 N -0.777 5.777 17 Si 0.910 3.090 18 H -0.263 1.263 19 H -0.283 1.283 20 H -0.241 1.241 21 H 0.044 0.956 22 H 0.075 0.925 23 H 0.029 0.971 24 H 0.372 0.628 25 H 0.129 0.871 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.425 4.537 6.374 8.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.234 6.234 3 C -0.065 4.065 4 C -0.179 4.179 5 S 0.276 5.724 6 C -0.215 4.215 7 O -0.264 6.264 8 C -0.122 4.122 9 C -0.204 4.204 10 C -0.059 4.059 11 C -0.221 4.221 12 C 0.085 3.915 13 C -0.421 4.421 14 H 0.123 0.877 15 C -0.145 4.145 16 N -0.398 5.398 17 Si 0.735 3.265 18 H -0.188 1.188 19 H -0.210 1.210 20 H -0.164 1.164 21 H 0.063 0.937 22 H 0.094 0.906 23 H 0.048 0.952 24 H 0.225 0.775 25 H 0.147 0.853 26 H 0.123 0.877 27 H 0.130 0.870 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.431 2.813 6.782 7.735 hybrid contribution -0.178 2.396 -0.629 2.483 sum -2.609 5.209 6.153 8.473 Atomic orbital electron populations 1.22819 0.82611 1.01169 0.99756 1.86029 1.17858 1.25484 1.94015 1.17477 1.08479 0.91550 0.89009 1.22477 1.03686 0.97120 0.94585 1.83972 1.65920 1.23701 0.98773 1.21779 1.14327 0.99415 0.86011 1.84836 1.45376 1.77073 1.19099 1.20198 1.00977 0.99713 0.91340 1.17259 1.13667 0.96733 0.92758 1.20328 0.97196 0.97574 0.90783 1.20649 1.05906 0.98642 0.96934 1.17773 0.90658 0.90768 0.92328 1.19549 1.34747 0.97451 0.90381 0.87656 1.26374 0.92062 1.01900 0.94180 1.69758 1.30700 1.39886 0.99459 0.86315 0.79265 0.80477 0.80408 1.18849 1.21001 1.16391 0.93692 0.90602 0.95230 0.77477 0.85340 0.87661 0.86972 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.13 101.05 1.12 1.74 15 2 O -0.32 -7.37 9.71 -18.79 -0.18 -7.55 15 3 C -0.01 -0.31 5.77 -38.12 -0.22 -0.53 15 4 C -0.06 -1.43 6.40 -38.48 -0.25 -1.67 15 5 S 0.02 0.34 23.26 -107.50 -2.50 -2.16 15 6 C -0.06 -1.07 7.54 29.05 0.22 -0.85 15 7 O -0.46 -7.25 13.64 -18.38 -0.25 -7.50 15 8 C -0.09 -1.72 10.16 -40.49 -0.41 -2.13 15 9 C -0.20 -4.27 5.88 -106.88 -0.63 -4.90 15 10 C -0.04 -0.80 9.99 -39.13 -0.39 -1.19 15 11 C -0.20 -4.52 7.05 -39.55 -0.28 -4.80 15 12 C 0.09 2.23 5.10 -106.73 -0.54 1.69 15 13 C -0.39 -9.90 9.15 -38.06 -0.35 -10.25 15 14 H 0.11 2.85 7.88 -52.48 -0.41 2.43 15 15 C 0.08 1.85 5.40 -17.34 -0.09 1.75 15 16 N -0.78 -18.69 13.94 55.54 0.77 -17.91 15 17 Si 0.91 18.56 24.51 -169.99 -4.17 14.39 15 18 H -0.26 -5.11 6.70 56.52 0.38 -4.73 15 19 H -0.28 -5.55 7.11 56.52 0.40 -5.15 15 20 H -0.24 -5.08 6.87 56.52 0.39 -4.69 15 21 H 0.04 0.88 8.14 -51.93 -0.42 0.45 15 22 H 0.08 1.23 8.14 -51.93 -0.42 0.80 15 23 H 0.03 0.53 8.14 -51.93 -0.42 0.11 15 24 H 0.37 3.96 9.06 45.56 0.41 4.37 15 25 H 0.13 2.09 8.06 -52.49 -0.42 1.67 15 26 H 0.11 1.82 8.06 -52.49 -0.42 1.40 15 27 H 0.11 2.39 4.74 -52.49 -0.25 2.14 15 28 H 0.29 6.28 8.30 -40.82 -0.34 5.95 15 LS Contribution 259.82 15.07 3.92 3.92 Total: -1.00 -27.43 259.82 -5.76 -33.19 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -1.53 Total: 4.76 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -1.82 Total: -21.14 kcal Atomic # 7 Polarization: -18.69 SS G_CDS: 0.77 Total: -17.91 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.43 Total: -15.05 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -4.17 Total: 14.39 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -2.50 Total: -2.16 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.43 -5.76 -33.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396379294.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.463 kcal (2) G-P(sol) polarization free energy of solvation -27.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds