Wall clock time and date at job start Mon Mar 30 2020 05:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36109 * 117.00044 * 2 1 4 4 C 1.33071 * 122.12741 * 359.71207 * 3 2 1 5 5 S 1.75470 * 110.78364 * 179.85683 * 4 3 2 6 6 C 1.76055 * 91.59546 * 0.34031 * 5 4 3 7 7 C 1.38919 * 130.36870 * 179.80869 * 6 5 4 8 8 C 1.40454 * 120.08810 * 180.02562 * 7 6 5 9 9 C 1.40970 * 120.16913 * 179.97438 * 8 7 6 10 10 H 1.08007 * 119.99613 * 150.11393 * 9 8 7 11 11 C 1.39746 * 120.00595 * 330.11328 * 9 8 7 12 12 N 1.30958 * 120.00042 * 161.67275 * 11 9 8 13 13 Si 1.86804 * 119.99884 * 341.67368 * 11 9 8 14 14 H 1.48504 * 109.46847 * 95.41170 * 13 11 9 15 15 H 1.48491 * 109.47129 * 215.41296 * 13 11 9 16 16 H 1.48496 * 109.46909 * 335.41228 * 13 11 9 17 17 C 1.41124 * 119.65214 * 0.02562 * 8 7 6 18 18 C 1.35695 * 120.33328 * 359.97438 * 17 8 7 19 19 O 1.35821 * 119.61741 * 180.02562 * 18 17 8 20 20 C 1.40279 * 109.45951 * 359.81333 * 6 5 4 21 21 H 1.08993 * 109.47588 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47255 * 300.00096 * 1 2 3 23 23 H 1.09007 * 109.47186 * 59.99399 * 1 2 3 24 24 H 1.07997 * 124.60840 * 0.02562 * 4 3 2 25 25 H 1.08001 * 119.95079 * 0.02727 * 7 6 5 26 26 H 0.97005 * 119.99355 * 180.02562 * 12 11 9 27 27 H 1.08001 * 119.83206 * 180.02562 * 17 8 7 28 28 H 0.96691 * 114.00447 * 269.98104 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2127 0.0000 4 6 1.3641 2.3549 -0.0057 5 16 2.4527 3.7311 0.0002 6 6 3.8634 2.6778 0.0001 7 6 5.2176 2.9875 0.0001 8 6 6.1750 1.9598 -0.0005 9 6 7.5496 2.2722 -0.0011 10 1 8.2561 1.6009 0.4646 11 6 7.9983 3.4503 -0.6042 12 7 9.1820 3.9269 -0.3097 13 14 6.9096 4.3452 -1.8303 14 1 6.1567 5.4184 -1.1325 15 1 7.7527 4.9445 -2.8957 16 1 5.9539 3.3843 -2.4371 17 6 5.7535 0.6130 -0.0016 18 6 4.4311 0.3087 -0.0016 19 8 4.0417 -0.9924 -0.0021 20 6 3.4465 1.3384 0.0000 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5140 -0.8900 24 1 0.2864 2.4253 -0.0103 25 1 5.5346 4.0200 0.0005 26 1 9.4933 4.7449 -0.7281 27 1 6.4872 -0.1795 -0.0016 28 1 3.9285 -1.3688 -0.8855 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396379924.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:09 Heat of formation + Delta-G solvation = -46.336254 kcal Electronic energy + Delta-G solvation = -15752.765604 eV Core-core repulsion = 13053.414324 eV Total energy + Delta-G solvation = -2699.351280 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.57147 -38.01680 -36.09394 -34.37707 -32.74252 -29.05256 -28.98821 -27.43746 -25.16005 -22.09933 -21.71933 -19.76100 -18.47087 -17.47256 -16.33390 -16.11777 -15.46117 -15.32678 -14.92557 -14.56165 -13.91454 -13.58656 -13.05674 -12.76333 -12.49918 -11.93960 -11.79064 -11.58196 -11.20757 -11.16407 -10.73560 -10.60170 -10.34743 -10.03672 -9.72937 -9.52709 -9.30263 -8.27782 -7.68822 -7.29015 -6.68986 -4.77635 1.60105 2.31478 2.41325 2.82107 2.91074 3.04893 3.13177 3.26960 3.79442 3.85161 4.16473 4.87995 5.22694 5.28915 5.35743 5.46973 5.62703 6.02040 6.18327 6.30235 6.42031 6.57862 6.68556 6.92102 7.12905 7.28234 7.41070 7.56752 7.86023 7.96922 8.21640 8.38243 8.52439 9.69936 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.029923 B = 0.008409 C = 0.006902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.500695 B = 3328.927829 C = 4055.955962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.301 6.301 3 C 0.183 3.817 4 C -0.383 4.383 5 S 0.028 5.972 6 C -0.025 4.025 7 C -0.242 4.242 8 C 0.120 3.880 9 C -0.409 4.409 10 H 0.101 0.899 11 C 0.082 3.918 12 N -0.781 5.781 13 Si 0.912 3.088 14 H -0.264 1.264 15 H -0.286 1.286 16 H -0.239 1.239 17 C -0.212 4.212 18 C 0.186 3.814 19 O -0.498 6.498 20 C -0.243 4.243 21 H 0.092 0.908 22 H 0.049 0.951 23 H 0.048 0.952 24 H 0.149 0.851 25 H 0.110 0.890 26 H 0.293 0.707 27 H 0.118 0.882 28 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.700 -2.493 -2.641 10.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.214 6.214 3 C 0.128 3.872 4 C -0.516 4.516 5 S 0.286 5.714 6 C -0.140 4.140 7 C -0.269 4.269 8 C 0.113 3.887 9 C -0.436 4.436 10 H 0.119 0.881 11 C -0.141 4.141 12 N -0.403 5.403 13 Si 0.738 3.262 14 H -0.190 1.190 15 H -0.213 1.213 16 H -0.162 1.162 17 C -0.232 4.232 18 C 0.140 3.860 19 O -0.307 6.307 20 C -0.249 4.249 21 H 0.110 0.890 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.167 0.833 25 H 0.128 0.872 26 H 0.104 0.896 27 H 0.136 0.864 28 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -9.679 -0.985 -2.019 9.936 hybrid contribution -0.508 -0.837 -0.924 1.346 sum -10.187 -1.822 -2.943 10.759 Atomic orbital electron populations 1.22917 0.79844 1.02884 1.00849 1.86140 1.19878 1.26577 1.88829 1.17559 0.90638 0.83650 0.95326 1.24159 1.02017 0.94990 1.30413 1.83554 0.95704 1.08838 1.83321 1.21863 0.96734 0.93987 1.01414 1.20237 0.89159 0.98513 1.19019 1.17407 0.92990 0.90302 0.87961 1.19606 0.92090 1.03748 1.28157 0.88076 1.26319 0.95519 0.95706 0.96594 1.69732 1.18329 1.18348 1.33856 0.86235 0.79917 0.80443 0.79650 1.18954 1.21270 1.16218 1.20922 0.93691 0.96849 1.11725 1.17820 0.90366 0.81396 0.96425 1.84735 1.90382 1.23127 1.32474 1.17210 0.89629 0.93092 1.24945 0.88965 0.93274 0.93349 0.83291 0.87198 0.89644 0.86412 0.76639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.91 101.05 1.00 1.40 15 2 O -0.30 -5.50 9.63 -32.05 -0.31 -5.80 15 3 C 0.18 3.77 6.66 -40.52 -0.27 3.51 15 4 C -0.38 -7.27 9.97 28.94 0.29 -6.99 15 5 S 0.03 0.57 23.29 -107.50 -2.50 -1.93 15 6 C -0.02 -0.57 6.46 -38.56 -0.25 -0.82 15 7 C -0.24 -5.84 7.19 -38.50 -0.28 -6.12 15 8 C 0.12 2.92 5.09 -106.93 -0.54 2.37 15 9 C -0.41 -10.22 9.54 -37.98 -0.36 -10.58 15 10 H 0.10 2.59 8.06 -52.48 -0.42 2.17 15 11 C 0.08 1.98 5.39 -17.36 -0.09 1.89 15 12 N -0.78 -19.15 13.93 55.54 0.77 -18.37 15 13 Si 0.91 19.72 24.52 -169.99 -4.17 15.56 15 14 H -0.26 -5.63 6.71 56.52 0.38 -5.25 15 15 H -0.29 -5.87 7.11 56.52 0.40 -5.47 15 16 H -0.24 -5.36 6.87 56.52 0.39 -4.98 15 17 C -0.21 -4.80 9.59 -39.40 -0.38 -5.18 15 18 C 0.19 4.12 6.71 -38.87 -0.26 3.86 15 19 O -0.50 -9.64 12.54 -31.14 -0.39 -10.03 15 20 C -0.24 -5.54 5.90 -106.64 -0.63 -6.17 15 21 H 0.09 0.93 8.14 -51.93 -0.42 0.50 15 22 H 0.05 0.60 7.83 -51.93 -0.41 0.19 15 23 H 0.05 0.57 7.81 -51.92 -0.41 0.16 15 24 H 0.15 2.39 6.89 -52.49 -0.36 2.03 15 25 H 0.11 2.62 4.72 -52.49 -0.25 2.38 15 26 H 0.29 6.44 8.30 -40.82 -0.34 6.11 15 27 H 0.12 2.47 8.06 -52.49 -0.42 2.05 15 28 H 0.38 5.55 9.06 45.56 0.41 5.97 15 LS Contribution 255.86 15.07 3.86 3.86 Total: -1.00 -27.76 255.86 -5.96 -33.72 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -1.45 Total: 5.85 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -1.77 Total: -22.84 kcal Atomic # 7 Polarization: -19.15 SS G_CDS: 0.77 Total: -18.37 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.70 Total: -15.84 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.17 Total: 15.56 kcal Atomic # 16 Polarization: 0.57 SS G_CDS: -2.50 Total: -1.93 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.76 -5.96 -33.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396379924.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.612 kcal (2) G-P(sol) polarization free energy of solvation -27.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds