Wall clock time and date at job start Mon Mar 30 2020 05:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35770 * 116.99785 * 2 1 4 4 C 1.37382 * 120.08855 * 359.72504 * 3 2 1 5 5 C 1.40125 * 120.68142 * 179.77143 * 4 3 2 6 6 S 1.76007 * 130.11591 * 180.19613 * 5 4 3 7 7 C 1.75243 * 92.31312 * 180.28267 * 6 5 4 8 8 O 1.35710 * 124.24889 * 180.02562 * 7 6 5 9 9 C 1.32300 * 111.49559 * 359.97438 * 7 6 5 10 10 C 1.40351 * 120.23553 * 0.50722 * 5 4 3 11 11 C 1.40353 * 119.25444 * 359.74916 * 10 5 4 12 12 C 1.39900 * 120.21223 * 0.02562 * 11 10 5 13 13 C 1.41105 * 120.10214 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99585 * 205.10573 * 13 12 11 15 15 C 1.39841 * 120.00324 * 25.10477 * 13 12 11 16 16 N 1.30939 * 119.99810 * 17.89680 * 15 13 12 17 17 Si 1.86799 * 120.00173 * 197.89891 * 15 13 12 18 18 H 1.48494 * 109.47303 * 60.00036 * 17 15 13 19 19 H 1.48508 * 109.47100 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46981 * 300.00011 * 17 15 13 21 21 H 1.09004 * 109.47100 * 299.99741 * 1 2 3 22 22 H 1.08990 * 109.47156 * 60.00408 * 1 2 3 23 23 H 1.08998 * 109.46513 * 180.02562 * 1 2 3 24 24 H 1.08003 * 119.65836 * 359.97438 * 4 3 2 25 25 H 0.96701 * 114.00943 * 359.97351 * 8 7 6 26 26 H 1.07997 * 122.60562 * 180.02562 * 9 7 6 27 27 H 1.08003 * 119.88941 * 180.02562 * 11 10 5 28 28 H 0.97003 * 119.99544 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2989 2.3630 -0.0057 5 6 1.9220 3.6181 -0.0010 6 16 1.2208 5.2325 -0.0017 7 6 2.7986 5.9950 -0.0020 8 8 2.9981 7.3373 -0.0021 9 6 3.7707 5.0976 -0.0010 10 6 3.3224 3.7119 -0.0010 11 6 4.0886 2.5360 -0.0005 12 6 3.4599 1.2861 -0.0005 13 6 4.2325 0.1054 0.0006 14 1 3.8197 -0.8104 -0.3963 15 6 5.5326 0.1208 0.5154 16 7 5.9144 1.0969 1.3003 17 14 6.7247 -1.2508 0.0832 18 1 6.9219 -1.2900 -1.3881 19 1 8.0277 -1.0031 0.7514 20 1 6.1721 -2.5501 0.5433 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 0.2206 2.3017 -0.0106 25 1 2.1823 7.8564 -0.0024 26 1 4.8154 5.3713 -0.0006 27 1 5.1669 2.5962 -0.0001 28 1 6.8161 1.1074 1.6577 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396380470.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:21 Heat of formation + Delta-G solvation = -42.621994 kcal Electronic energy + Delta-G solvation = -15526.726443 eV Core-core repulsion = 12827.536226 eV Total energy + Delta-G solvation = -2699.190218 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.93019 -37.94872 -36.49966 -34.26732 -32.18867 -29.74243 -27.78092 -26.48465 -25.16285 -22.14646 -21.26487 -19.78350 -18.57290 -17.38891 -16.91901 -15.53717 -15.06270 -14.80206 -14.66010 -14.09404 -14.03294 -13.86547 -12.96096 -12.55154 -12.21676 -12.00797 -11.66730 -11.40682 -11.17848 -10.97592 -10.73949 -10.59571 -10.28934 -10.06747 -9.55074 -9.36251 -8.80477 -8.41383 -7.11195 -6.85165 -6.62084 -4.34653 1.92006 2.05106 2.54782 2.73719 3.05838 3.06397 3.10903 3.39034 3.90381 4.20499 4.32342 4.49226 5.42529 5.65340 5.72384 5.80503 5.96031 6.19059 6.30381 6.51233 6.55622 6.89963 7.06215 7.14366 7.28372 7.51007 7.62339 7.71596 7.98141 8.23461 8.55731 8.71278 8.86370 10.11161 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022218 B = 0.008035 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.928194 B = 3483.827408 C = 4659.058895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.307 6.307 3 C 0.056 3.944 4 C -0.154 4.154 5 C -0.200 4.200 6 S -0.028 6.028 7 C 0.026 3.974 8 O -0.452 6.452 9 C -0.155 4.155 10 C -0.045 4.045 11 C -0.132 4.132 12 C 0.103 3.897 13 C -0.438 4.438 14 H 0.087 0.913 15 C 0.072 3.928 16 N -0.788 5.788 17 Si 0.913 3.087 18 H -0.262 1.262 19 H -0.278 1.278 20 H -0.264 1.264 21 H 0.043 0.957 22 H 0.042 0.958 23 H 0.085 0.915 24 H 0.103 0.897 25 H 0.391 0.609 26 H 0.135 0.865 27 H 0.132 0.868 28 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.427 3.356 -1.693 6.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.220 6.220 3 C 0.010 3.990 4 C -0.177 4.177 5 C -0.315 4.315 6 S 0.225 5.775 7 C -0.132 4.132 8 O -0.256 6.256 9 C -0.186 4.186 10 C -0.050 4.050 11 C -0.155 4.155 12 C 0.099 3.901 13 C -0.467 4.467 14 H 0.105 0.895 15 C -0.146 4.146 16 N -0.413 5.413 17 Si 0.737 3.263 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.189 1.189 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.104 0.896 24 H 0.121 0.879 25 H 0.241 0.759 26 H 0.153 0.847 27 H 0.150 0.850 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.903 3.695 -1.537 7.132 hybrid contribution 1.014 -0.538 -0.008 1.148 sum -4.890 3.157 -1.545 6.022 Atomic orbital electron populations 1.22811 0.81283 1.02184 1.00226 1.86044 1.18650 1.27608 1.89748 1.19041 0.92365 0.82341 1.05266 1.19784 0.97354 0.90141 1.10433 1.21141 0.94977 0.93126 1.22240 1.83436 1.07061 1.01294 1.85749 1.22004 0.96395 0.85518 1.09286 1.84786 1.35366 1.13026 1.92454 1.20416 0.98747 0.90741 1.08670 1.18644 0.91270 0.91914 1.03183 1.20846 0.99165 0.88153 1.07302 1.16845 0.87044 0.93931 0.92235 1.19413 0.96822 0.96499 1.33973 0.89536 1.25940 0.98898 0.97119 0.92653 1.69855 1.19475 1.30682 1.21259 0.86282 0.78791 0.81224 0.80011 1.18687 1.20297 1.18893 0.93851 0.93920 0.89605 0.87911 0.75859 0.84731 0.85037 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.81 101.05 0.99 1.49 15 2 O -0.31 -6.81 9.77 -19.02 -0.19 -6.99 15 3 C 0.06 1.37 6.70 -38.59 -0.26 1.11 15 4 C -0.15 -3.46 9.05 -39.19 -0.35 -3.82 15 5 C -0.20 -4.60 6.49 -38.08 -0.25 -4.84 15 6 S -0.03 -0.53 23.16 -107.50 -2.49 -3.02 15 7 C 0.03 0.51 7.49 28.81 0.22 0.72 15 8 O -0.45 -7.13 13.64 -18.83 -0.26 -7.39 15 9 C -0.15 -3.35 10.40 -38.56 -0.40 -3.75 15 10 C -0.04 -1.08 6.02 -105.36 -0.63 -1.71 15 11 C -0.13 -3.43 8.73 -38.16 -0.33 -3.76 15 12 C 0.10 2.73 5.57 -106.88 -0.59 2.13 15 13 C -0.44 -11.43 8.69 -37.90 -0.33 -11.75 15 14 H 0.09 2.21 7.65 -52.48 -0.40 1.81 15 15 C 0.07 1.77 5.12 -17.33 -0.09 1.69 15 16 N -0.79 -19.92 10.99 55.54 0.61 -19.31 15 17 Si 0.91 18.34 29.60 -169.99 -5.03 13.31 15 18 H -0.26 -5.23 7.11 56.52 0.40 -4.83 15 19 H -0.28 -5.43 7.11 56.52 0.40 -5.03 15 20 H -0.26 -5.27 7.11 56.52 0.40 -4.87 15 21 H 0.04 0.67 7.66 -51.93 -0.40 0.27 15 22 H 0.04 0.64 7.64 -51.93 -0.40 0.24 15 23 H 0.09 1.13 8.14 -51.93 -0.42 0.70 15 24 H 0.10 2.03 6.22 -52.48 -0.33 1.70 15 25 H 0.39 4.06 9.00 45.56 0.41 4.47 15 26 H 0.13 2.74 8.06 -52.49 -0.42 2.32 15 27 H 0.13 3.47 6.15 -52.48 -0.32 3.15 15 28 H 0.28 6.53 8.30 -40.82 -0.34 6.19 15 LS Contribution 261.37 15.07 3.94 3.94 Total: -1.00 -28.97 261.37 -6.86 -35.83 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -1.41 Total: 6.13 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -2.04 Total: -22.50 kcal Atomic # 7 Polarization: -19.92 SS G_CDS: 0.61 Total: -19.31 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.44 Total: -14.38 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Atomic # 16 Polarization: -0.53 SS G_CDS: -2.49 Total: -3.02 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.97 -6.86 -35.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396380470.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.791 kcal (2) G-P(sol) polarization free energy of solvation -28.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds