Wall clock time and date at job start Mon Mar 30 2020 05:45:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.35770 * 116.99785 * 2 1
4 4 C 1.37382 * 120.08855 * 359.72504 * 3 2 1
5 5 C 1.40125 * 120.68142 * 179.77143 * 4 3 2
6 6 S 1.76007 * 130.11591 * 180.19613 * 5 4 3
7 7 C 1.75243 * 92.31312 * 180.28267 * 6 5 4
8 8 O 1.35710 * 124.24889 * 180.02562 * 7 6 5
9 9 C 1.32300 * 111.49559 * 359.97438 * 7 6 5
10 10 C 1.40351 * 120.23553 * 0.50722 * 5 4 3
11 11 C 1.40353 * 119.25444 * 359.74916 * 10 5 4
12 12 C 1.39900 * 120.21223 * 0.02562 * 11 10 5
13 13 C 1.41105 * 120.10214 * 180.02562 * 12 11 10
14 14 H 1.08005 * 119.99585 * 205.10573 * 13 12 11
15 15 C 1.39841 * 120.00324 * 25.10477 * 13 12 11
16 16 N 1.30939 * 119.99810 * 17.89680 * 15 13 12
17 17 Si 1.86799 * 120.00173 * 197.89891 * 15 13 12
18 18 H 1.48494 * 109.47303 * 60.00036 * 17 15 13
19 19 H 1.48508 * 109.47100 * 180.02562 * 17 15 13
20 20 H 1.48500 * 109.46981 * 300.00011 * 17 15 13
21 21 H 1.09004 * 109.47100 * 299.99741 * 1 2 3
22 22 H 1.08990 * 109.47156 * 60.00408 * 1 2 3
23 23 H 1.08998 * 109.46513 * 180.02562 * 1 2 3
24 24 H 1.08003 * 119.65836 * 359.97438 * 4 3 2
25 25 H 0.96701 * 114.00943 * 359.97351 * 8 7 6
26 26 H 1.07997 * 122.60562 * 180.02562 * 9 7 6
27 27 H 1.08003 * 119.88941 * 180.02562 * 11 10 5
28 28 H 0.97003 * 119.99544 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0454 1.2097 0.0000
4 6 1.2989 2.3630 -0.0057
5 6 1.9220 3.6181 -0.0010
6 16 1.2208 5.2325 -0.0017
7 6 2.7986 5.9950 -0.0020
8 8 2.9981 7.3373 -0.0021
9 6 3.7707 5.0976 -0.0010
10 6 3.3224 3.7119 -0.0010
11 6 4.0886 2.5360 -0.0005
12 6 3.4599 1.2861 -0.0005
13 6 4.2325 0.1054 0.0006
14 1 3.8197 -0.8104 -0.3963
15 6 5.5326 0.1208 0.5154
16 7 5.9144 1.0969 1.3003
17 14 6.7247 -1.2508 0.0832
18 1 6.9219 -1.2900 -1.3881
19 1 8.0277 -1.0031 0.7514
20 1 6.1721 -2.5501 0.5433
21 1 -0.3633 0.5138 0.8900
22 1 -0.3633 0.5137 -0.8899
23 1 -0.3632 -1.0277 0.0005
24 1 0.2206 2.3017 -0.0106
25 1 2.1823 7.8564 -0.0024
26 1 4.8154 5.3713 -0.0006
27 1 5.1669 2.5962 -0.0001
28 1 6.8161 1.1074 1.6577
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000396380470.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:45:21
Heat of formation + Delta-G solvation = -42.621994 kcal
Electronic energy + Delta-G solvation = -15526.726443 eV
Core-core repulsion = 12827.536226 eV
Total energy + Delta-G solvation = -2699.190218 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 250.045 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-38.93019 -37.94872 -36.49966 -34.26732 -32.18867 -29.74243 -27.78092 -26.48465
-25.16285 -22.14646 -21.26487 -19.78350 -18.57290 -17.38891 -16.91901 -15.53717
-15.06270 -14.80206 -14.66010 -14.09404 -14.03294 -13.86547 -12.96096 -12.55154
-12.21676 -12.00797 -11.66730 -11.40682 -11.17848 -10.97592 -10.73949 -10.59571
-10.28934 -10.06747 -9.55074 -9.36251 -8.80477 -8.41383 -7.11195 -6.85165
-6.62084 -4.34653 1.92006 2.05106 2.54782 2.73719 3.05838 3.06397
3.10903 3.39034 3.90381 4.20499 4.32342 4.49226 5.42529 5.65340
5.72384 5.80503 5.96031 6.19059 6.30381 6.51233 6.55622 6.89963
7.06215 7.14366 7.28372 7.51007 7.62339 7.71596 7.98141 8.23461
8.55731 8.71278 8.86370 10.11161
Molecular weight = 250.05amu
Principal moments of inertia in cm(-1)
A = 0.022218 B = 0.008035 C = 0.006008
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1259.928194 B = 3483.827408 C = 4659.058895
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.307 6.307
3 C 0.056 3.944
4 C -0.154 4.154
5 C -0.200 4.200
6 S -0.028 6.028
7 C 0.026 3.974
8 O -0.452 6.452
9 C -0.155 4.155
10 C -0.045 4.045
11 C -0.132 4.132
12 C 0.103 3.897
13 C -0.438 4.438
14 H 0.087 0.913
15 C 0.072 3.928
16 N -0.788 5.788
17 Si 0.913 3.087
18 H -0.262 1.262
19 H -0.278 1.278
20 H -0.264 1.264
21 H 0.043 0.957
22 H 0.042 0.958
23 H 0.085 0.915
24 H 0.103 0.897
25 H 0.391 0.609
26 H 0.135 0.865
27 H 0.132 0.868
28 H 0.284 0.716
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.427 3.356 -1.693 6.602
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.220 6.220
3 C 0.010 3.990
4 C -0.177 4.177
5 C -0.315 4.315
6 S 0.225 5.775
7 C -0.132 4.132
8 O -0.256 6.256
9 C -0.186 4.186
10 C -0.050 4.050
11 C -0.155 4.155
12 C 0.099 3.901
13 C -0.467 4.467
14 H 0.105 0.895
15 C -0.146 4.146
16 N -0.413 5.413
17 Si 0.737 3.263
18 H -0.187 1.187
19 H -0.203 1.203
20 H -0.189 1.189
21 H 0.061 0.939
22 H 0.061 0.939
23 H 0.104 0.896
24 H 0.121 0.879
25 H 0.241 0.759
26 H 0.153 0.847
27 H 0.150 0.850
28 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -5.903 3.695 -1.537 7.132
hybrid contribution 1.014 -0.538 -0.008 1.148
sum -4.890 3.157 -1.545 6.022
Atomic orbital electron populations
1.22811 0.81283 1.02184 1.00226 1.86044 1.18650 1.27608 1.89748
1.19041 0.92365 0.82341 1.05266 1.19784 0.97354 0.90141 1.10433
1.21141 0.94977 0.93126 1.22240 1.83436 1.07061 1.01294 1.85749
1.22004 0.96395 0.85518 1.09286 1.84786 1.35366 1.13026 1.92454
1.20416 0.98747 0.90741 1.08670 1.18644 0.91270 0.91914 1.03183
1.20846 0.99165 0.88153 1.07302 1.16845 0.87044 0.93931 0.92235
1.19413 0.96822 0.96499 1.33973 0.89536 1.25940 0.98898 0.97119
0.92653 1.69855 1.19475 1.30682 1.21259 0.86282 0.78791 0.81224
0.80011 1.18687 1.20297 1.18893 0.93851 0.93920 0.89605 0.87911
0.75859 0.84731 0.85037 0.90536
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.50 9.81 101.05 0.99 1.49 15
2 O -0.31 -6.81 9.77 -19.02 -0.19 -6.99 15
3 C 0.06 1.37 6.70 -38.59 -0.26 1.11 15
4 C -0.15 -3.46 9.05 -39.19 -0.35 -3.82 15
5 C -0.20 -4.60 6.49 -38.08 -0.25 -4.84 15
6 S -0.03 -0.53 23.16 -107.50 -2.49 -3.02 15
7 C 0.03 0.51 7.49 28.81 0.22 0.72 15
8 O -0.45 -7.13 13.64 -18.83 -0.26 -7.39 15
9 C -0.15 -3.35 10.40 -38.56 -0.40 -3.75 15
10 C -0.04 -1.08 6.02 -105.36 -0.63 -1.71 15
11 C -0.13 -3.43 8.73 -38.16 -0.33 -3.76 15
12 C 0.10 2.73 5.57 -106.88 -0.59 2.13 15
13 C -0.44 -11.43 8.69 -37.90 -0.33 -11.75 15
14 H 0.09 2.21 7.65 -52.48 -0.40 1.81 15
15 C 0.07 1.77 5.12 -17.33 -0.09 1.69 15
16 N -0.79 -19.92 10.99 55.54 0.61 -19.31 15
17 Si 0.91 18.34 29.60 -169.99 -5.03 13.31 15
18 H -0.26 -5.23 7.11 56.52 0.40 -4.83 15
19 H -0.28 -5.43 7.11 56.52 0.40 -5.03 15
20 H -0.26 -5.27 7.11 56.52 0.40 -4.87 15
21 H 0.04 0.67 7.66 -51.93 -0.40 0.27 15
22 H 0.04 0.64 7.64 -51.93 -0.40 0.24 15
23 H 0.09 1.13 8.14 -51.93 -0.42 0.70 15
24 H 0.10 2.03 6.22 -52.48 -0.33 1.70 15
25 H 0.39 4.06 9.00 45.56 0.41 4.47 15
26 H 0.13 2.74 8.06 -52.49 -0.42 2.32 15
27 H 0.13 3.47 6.15 -52.48 -0.32 3.15 15
28 H 0.28 6.53 8.30 -40.82 -0.34 6.19 15
LS Contribution 261.37 15.07 3.94 3.94
Total: -1.00 -28.97 261.37 -6.86 -35.83
By element:
Atomic # 1 Polarization: 7.55 SS G_CDS: -1.41 Total: 6.13 kcal
Atomic # 6 Polarization: -20.47 SS G_CDS: -2.04 Total: -22.50 kcal
Atomic # 7 Polarization: -19.92 SS G_CDS: 0.61 Total: -19.31 kcal
Atomic # 8 Polarization: -13.94 SS G_CDS: -0.44 Total: -14.38 kcal
Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal
Atomic # 16 Polarization: -0.53 SS G_CDS: -2.49 Total: -3.02 kcal
Total LS contribution 3.94 Total: 3.94 kcal
Total: -28.97 -6.86 -35.83 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000396380470.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.791 kcal
(2) G-P(sol) polarization free energy of solvation -28.967 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.757 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.831 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.622 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds