Wall clock time and date at job start Mon Mar 30 2020 05:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35770 * 116.99785 * 2 1 4 4 C 1.37382 * 120.08855 * 359.72504 * 3 2 1 5 5 C 1.40125 * 120.68142 * 179.77143 * 4 3 2 6 6 S 1.76007 * 130.11591 * 180.19613 * 5 4 3 7 7 C 1.75243 * 92.31312 * 180.28267 * 6 5 4 8 8 O 1.35710 * 124.24889 * 180.02562 * 7 6 5 9 9 C 1.32300 * 111.49559 * 359.97438 * 7 6 5 10 10 C 1.40351 * 120.23553 * 0.50722 * 5 4 3 11 11 C 1.40353 * 119.25444 * 359.74916 * 10 5 4 12 12 C 1.39900 * 120.21223 * 0.02562 * 11 10 5 13 13 C 1.41105 * 120.10214 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99585 * 205.10573 * 13 12 11 15 15 C 1.39841 * 120.00324 * 25.10477 * 13 12 11 16 16 N 1.30939 * 119.99810 * 17.89680 * 15 13 12 17 17 Si 1.86799 * 120.00173 * 197.89891 * 15 13 12 18 18 H 1.48494 * 109.47303 * 60.00036 * 17 15 13 19 19 H 1.48508 * 109.47100 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46981 * 300.00011 * 17 15 13 21 21 H 1.09004 * 109.47100 * 299.99741 * 1 2 3 22 22 H 1.08990 * 109.47156 * 60.00408 * 1 2 3 23 23 H 1.08998 * 109.46513 * 180.02562 * 1 2 3 24 24 H 1.08003 * 119.65836 * 359.97438 * 4 3 2 25 25 H 0.96701 * 114.00943 * 359.97351 * 8 7 6 26 26 H 1.07997 * 122.60562 * 180.02562 * 9 7 6 27 27 H 1.08003 * 119.88941 * 180.02562 * 11 10 5 28 28 H 0.97003 * 119.99544 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2989 2.3630 -0.0057 5 6 1.9220 3.6181 -0.0010 6 16 1.2208 5.2325 -0.0017 7 6 2.7986 5.9950 -0.0020 8 8 2.9981 7.3373 -0.0021 9 6 3.7707 5.0976 -0.0010 10 6 3.3224 3.7119 -0.0010 11 6 4.0886 2.5360 -0.0005 12 6 3.4599 1.2861 -0.0005 13 6 4.2325 0.1054 0.0006 14 1 3.8197 -0.8104 -0.3963 15 6 5.5326 0.1208 0.5154 16 7 5.9144 1.0969 1.3003 17 14 6.7247 -1.2508 0.0832 18 1 6.9219 -1.2900 -1.3881 19 1 8.0277 -1.0031 0.7514 20 1 6.1721 -2.5501 0.5433 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 0.2206 2.3017 -0.0106 25 1 2.1823 7.8564 -0.0024 26 1 4.8154 5.3713 -0.0006 27 1 5.1669 2.5962 -0.0001 28 1 6.8161 1.1074 1.6577 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396380470.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:21 Heat of formation + Delta-G solvation = -61.976717 kcal Electronic energy + Delta-G solvation = -15527.565727 eV Core-core repulsion = 12827.536226 eV Total energy + Delta-G solvation = -2700.029501 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.63664 -39.42164 -38.13287 -36.05599 -33.89135 -31.54533 -29.43395 -28.03184 -26.92052 -23.84640 -22.96927 -21.48195 -20.09253 -19.13792 -18.64942 -17.21814 -16.74209 -16.33275 -16.22223 -15.75866 -15.48096 -15.40102 -14.63277 -14.25767 -13.92157 -13.65133 -13.32712 -13.05798 -12.79295 -12.60723 -12.25580 -12.13906 -11.93895 -11.81162 -11.27460 -11.13315 -10.45881 -10.14263 -8.86853 -8.63026 -8.30275 -6.26047 0.22248 0.47969 0.73033 1.03701 1.39964 1.45188 1.52871 1.66909 2.22495 2.64702 2.77762 2.89561 3.55505 4.11009 4.41973 4.47197 4.52747 4.63710 4.75082 4.85405 4.87759 5.12758 5.24553 5.35941 5.46033 5.73435 5.87268 6.11956 6.38689 6.43102 6.71134 6.84312 7.07382 8.31880 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022218 B = 0.008035 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.928194 B = 3483.827408 C = 4659.058895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.330 6.330 3 C 0.045 3.955 4 C -0.154 4.154 5 C -0.227 4.227 6 S 0.054 5.946 7 C 0.054 3.946 8 O -0.444 6.444 9 C -0.202 4.202 10 C -0.058 4.058 11 C -0.161 4.161 12 C 0.071 3.929 13 C -0.473 4.473 14 H 0.079 0.921 15 C 0.034 3.966 16 N -0.821 5.821 17 Si 0.984 3.016 18 H -0.260 1.260 19 H -0.267 1.267 20 H -0.259 1.259 21 H 0.052 0.948 22 H 0.056 0.944 23 H 0.117 0.883 24 H 0.133 0.867 25 H 0.418 0.582 26 H 0.135 0.865 27 H 0.112 0.888 28 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.062 4.358 -1.892 8.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.245 6.245 3 C -0.002 4.002 4 C -0.177 4.177 5 C -0.342 4.342 6 S 0.308 5.692 7 C -0.106 4.106 8 O -0.251 6.251 9 C -0.232 4.232 10 C -0.064 4.064 11 C -0.183 4.183 12 C 0.068 3.932 13 C -0.502 4.502 14 H 0.097 0.903 15 C -0.181 4.181 16 N -0.447 5.447 17 Si 0.804 3.196 18 H -0.184 1.184 19 H -0.191 1.191 20 H -0.184 1.184 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.135 0.865 24 H 0.151 0.849 25 H 0.274 0.726 26 H 0.152 0.848 27 H 0.130 0.870 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.585 4.730 -1.736 9.106 hybrid contribution 1.302 -0.635 0.057 1.450 sum -6.283 4.095 -1.679 7.685 Atomic orbital electron populations 1.23187 0.78153 1.04746 1.01246 1.85995 1.21913 1.26931 1.89643 1.19136 0.92115 0.83747 1.05171 1.20068 0.98742 0.89540 1.09366 1.21678 0.95314 0.95999 1.21188 1.83048 1.04788 0.96937 1.84463 1.22064 0.96461 0.86651 1.05455 1.84780 1.37662 1.11335 1.91359 1.20363 0.99726 0.90312 1.12820 1.18882 0.92204 0.92586 1.02702 1.20739 0.98551 0.89254 1.09787 1.17216 0.88718 0.94277 0.93014 1.19572 0.98380 0.96415 1.35875 0.90252 1.26768 0.99957 0.99563 0.91861 1.69918 1.20154 1.32517 1.22120 0.85221 0.76629 0.78005 0.79708 1.18392 1.19106 1.18359 0.92920 0.92549 0.86467 0.84893 0.72622 0.84760 0.87034 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.65 9.81 113.37 1.11 1.77 15 2 O -0.33 -14.75 9.77 -90.98 -0.89 -15.64 15 3 C 0.04 2.23 6.70 22.91 0.15 2.38 15 4 C -0.15 -6.82 9.05 22.53 0.20 -6.61 15 5 C -0.23 -10.21 6.49 23.24 0.15 -10.06 15 6 S 0.05 1.84 23.16 -56.49 -1.31 0.53 15 7 C 0.05 1.92 7.49 66.75 0.50 2.42 15 8 O -0.44 -12.31 13.64 -90.31 -1.23 -13.54 15 9 C -0.20 -8.70 10.40 23.11 0.24 -8.46 15 10 C -0.06 -2.86 6.02 -20.34 -0.12 -2.98 15 11 C -0.16 -8.80 8.73 23.19 0.20 -8.60 15 12 C 0.07 3.96 5.57 -21.33 -0.12 3.84 15 13 C -0.47 -25.97 8.69 23.36 0.20 -25.77 15 14 H 0.08 4.28 7.65 -2.91 -0.02 4.26 15 15 C 0.03 1.72 5.12 85.21 0.44 2.15 15 16 N -0.82 -43.55 10.99 21.81 0.24 -43.31 15 17 Si 0.98 38.64 29.60 68.60 2.03 40.67 15 18 H -0.26 -9.97 7.11 99.48 0.71 -9.26 15 19 H -0.27 -9.86 7.11 99.48 0.71 -9.15 15 20 H -0.26 -9.87 7.11 99.48 0.71 -9.17 15 21 H 0.05 1.50 7.66 -2.38 -0.02 1.48 15 22 H 0.06 1.56 7.64 -2.39 -0.02 1.54 15 23 H 0.12 2.79 8.14 -2.39 -0.02 2.77 15 24 H 0.13 4.91 6.22 -2.91 -0.02 4.89 15 25 H 0.42 6.56 9.00 -74.06 -0.67 5.90 15 26 H 0.13 5.62 8.06 -2.91 -0.02 5.60 15 27 H 0.11 6.36 6.15 -2.91 -0.02 6.34 15 28 H 0.29 13.90 8.30 -92.71 -0.77 13.13 15 Total: -1.00 -65.25 261.37 2.35 -62.90 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.55 Total: 18.33 kcal Atomic # 6 Polarization: -52.89 SS G_CDS: 2.96 Total: -49.93 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.24 Total: -43.31 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -2.12 Total: -29.18 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -1.31 Total: 0.53 kcal Total: -65.25 2.35 -62.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396380470.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.925 kcal (2) G-P(sol) polarization free energy of solvation -65.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds