Wall clock time and date at job start Mon Mar 30 2020 05:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35945 * 116.99841 * 2 1 4 4 C 1.38149 * 119.80753 * 359.72900 * 3 2 1 5 5 C 1.38574 * 120.04608 * 180.31763 * 4 3 2 6 6 C 1.37382 * 120.28734 * 359.93372 * 5 4 3 7 7 C 1.40944 * 120.54474 * 0.03910 * 6 5 4 8 8 C 1.46555 * 128.66696 * 179.97438 * 7 6 5 9 9 C 1.40686 * 123.23847 * 0.02660 * 8 7 6 10 10 H 1.07994 * 119.99602 * 33.73742 * 9 8 7 11 11 C 1.39547 * 119.99929 * 213.74403 * 9 8 7 12 12 N 1.31256 * 120.00338 * 20.57067 * 11 9 8 13 13 Si 1.86796 * 119.99861 * 200.56715 * 11 9 8 14 14 H 1.48505 * 109.47058 * 60.00176 * 13 11 9 15 15 H 1.48500 * 109.47286 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47580 * 300.00058 * 13 11 9 17 17 C 1.37462 * 113.52834 * 180.02562 * 8 7 6 18 18 O 1.35263 * 124.58563 * 180.02562 * 17 8 7 19 19 S 1.75185 * 110.83488 * 359.97438 * 17 8 7 20 20 C 1.39164 * 119.09657 * 0.02562 * 7 6 5 21 21 H 1.08997 * 109.47312 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47430 * 299.99799 * 1 2 3 23 23 H 1.09006 * 109.47253 * 59.99502 * 1 2 3 24 24 H 1.07999 * 119.98164 * 0.27695 * 4 3 2 25 25 H 1.08000 * 119.85661 * 179.97438 * 5 4 3 26 26 H 1.07995 * 119.72608 * 180.02562 * 6 5 4 27 27 H 0.96996 * 120.00385 * 179.97438 * 12 11 9 28 28 H 0.96701 * 114.00453 * 179.97438 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2898 2.3674 -0.0057 5 6 1.9137 3.6047 -0.0123 6 6 3.2850 3.6892 -0.0120 7 6 4.0746 2.5217 -0.0057 8 6 5.5354 2.4043 -0.0048 9 6 6.3983 3.5154 -0.0099 10 1 6.1151 4.4214 0.5051 11 6 7.6201 3.4468 -0.6806 12 7 7.8039 2.5484 -1.6197 13 14 8.9942 4.6338 -0.2421 14 1 9.3593 4.4621 1.1871 15 1 10.1790 4.3557 -1.0930 16 1 8.5365 6.0277 -0.4719 17 6 5.9814 1.1040 0.0016 18 8 7.2839 0.7391 0.0042 19 16 4.6349 -0.0166 0.0074 20 6 3.4464 1.2799 -0.0003 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 0.2115 2.3068 -0.0056 25 1 1.3195 4.5065 -0.0172 26 1 3.7618 4.6582 -0.0168 27 1 8.6530 2.5010 -2.0861 28 1 7.4244 -0.2176 0.0091 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396380549.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:44 Heat of formation + Delta-G solvation = -34.536656 kcal Electronic energy + Delta-G solvation = -15697.045821 eV Core-core repulsion = 12998.206210 eV Total energy + Delta-G solvation = -2698.839611 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.50260 -37.42528 -36.19802 -33.69978 -32.03874 -29.76381 -27.87365 -27.00723 -25.15956 -22.37971 -21.30845 -19.58249 -18.26957 -16.88067 -16.39139 -15.86572 -15.42233 -15.25830 -14.77506 -13.98973 -13.60351 -13.22183 -13.02760 -12.63224 -12.08585 -11.97585 -11.58475 -11.49156 -11.07898 -10.92618 -10.77646 -10.66672 -10.20941 -10.11802 -9.56676 -9.27461 -8.84947 -8.01670 -6.99006 -6.61536 -6.36584 -4.05876 1.80502 2.02931 2.62212 3.10914 3.21460 3.22581 3.26840 3.65307 3.75196 4.17927 4.54542 5.19332 5.23688 5.30423 5.38951 5.41912 5.56949 5.65899 5.95284 6.10519 6.34432 6.67732 6.81362 6.99453 7.18904 7.37646 7.48832 7.81716 7.85652 8.50745 8.65918 9.08073 9.15689 10.53308 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.034121 B = 0.007686 C = 0.006455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.419156 B = 3642.283528 C = 4336.681096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.319 6.319 3 C 0.153 3.847 4 C -0.229 4.229 5 C -0.099 4.099 6 C -0.115 4.115 7 C 0.003 3.997 8 C 0.040 3.960 9 C -0.444 4.444 10 H 0.073 0.927 11 C 0.080 3.920 12 N -0.775 5.775 13 Si 0.902 3.098 14 H -0.268 1.268 15 H -0.283 1.283 16 H -0.271 1.271 17 C -0.079 4.079 18 O -0.404 6.404 19 S -0.020 6.020 20 C -0.161 4.161 21 H 0.093 0.907 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.121 0.879 25 H 0.117 0.883 26 H 0.123 0.877 27 H 0.273 0.727 28 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.054 -2.175 1.982 9.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.233 6.233 3 C 0.104 3.896 4 C -0.250 4.250 5 C -0.121 4.121 6 C -0.134 4.134 7 C -0.007 4.007 8 C 0.031 3.969 9 C -0.477 4.477 10 H 0.091 0.909 11 C -0.137 4.137 12 N -0.402 5.402 13 Si 0.728 3.272 14 H -0.193 1.193 15 H -0.208 1.208 16 H -0.196 1.196 17 C -0.240 4.240 18 O -0.203 6.203 19 S 0.237 5.763 20 C -0.276 4.276 21 H 0.111 0.889 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.139 0.861 25 H 0.135 0.865 26 H 0.141 0.859 27 H 0.084 0.916 28 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.664 -3.392 1.811 9.479 hybrid contribution 0.504 1.408 -0.045 1.496 sum -8.159 -1.984 1.767 8.581 Atomic orbital electron populations 1.22942 0.79300 1.03134 1.01044 1.86072 1.20587 1.27550 1.89054 1.18207 0.89351 0.84050 0.97999 1.20692 0.98641 0.92043 1.13606 1.20500 0.94218 0.96313 1.01029 1.20829 0.92508 0.97550 1.02554 1.19264 0.93795 0.90835 0.96776 1.16684 0.87486 0.91382 1.01373 1.18454 1.00921 0.98477 1.29873 0.90859 1.25526 0.98966 0.95856 0.93395 1.69905 1.24355 1.30424 1.15502 0.86483 0.80470 0.80827 0.79446 1.19322 1.20836 1.19622 1.22342 0.84122 0.93088 1.24404 1.84898 1.18928 1.24228 1.92230 1.83284 0.98194 1.10429 1.84395 1.21253 0.92879 0.97348 1.16133 0.88880 0.92996 0.92986 0.86143 0.86464 0.85897 0.91628 0.79963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.80 101.05 0.99 1.37 15 2 O -0.32 -5.71 10.45 -19.57 -0.20 -5.91 15 3 C 0.15 3.07 6.72 -38.88 -0.26 2.80 15 4 C -0.23 -3.96 9.02 -39.49 -0.36 -4.32 15 5 C -0.10 -1.75 10.01 -39.77 -0.40 -2.14 15 6 C -0.11 -2.41 9.82 -38.87 -0.38 -2.79 15 7 C 0.00 0.08 6.00 -105.18 -0.63 -0.55 15 8 C 0.04 1.08 5.52 -105.90 -0.58 0.49 15 9 C -0.44 -12.21 8.88 -38.17 -0.34 -12.54 15 10 H 0.07 1.92 7.92 -52.49 -0.42 1.51 15 11 C 0.08 2.13 4.71 -17.31 -0.08 2.05 15 12 N -0.77 -21.30 11.05 55.53 0.61 -20.68 15 13 Si 0.90 20.08 29.61 -169.99 -5.03 15.05 15 14 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 15 H -0.28 -6.18 7.11 56.52 0.40 -5.77 15 16 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 17 C -0.08 -2.04 7.05 30.45 0.21 -1.83 15 18 O -0.40 -10.08 10.83 -17.48 -0.19 -10.27 15 19 S -0.02 -0.45 23.07 -107.50 -2.48 -2.93 15 20 C -0.16 -3.72 6.37 -38.50 -0.25 -3.97 15 21 H 0.09 0.88 8.14 -51.93 -0.42 0.45 15 22 H 0.05 0.55 7.65 -51.93 -0.40 0.16 15 23 H 0.05 0.56 7.64 -51.93 -0.40 0.17 15 24 H 0.12 1.65 6.25 -52.49 -0.33 1.33 15 25 H 0.12 1.64 8.06 -52.49 -0.42 1.22 15 26 H 0.12 2.45 8.03 -52.49 -0.42 2.03 15 27 H 0.27 6.99 8.31 -40.82 -0.34 6.65 15 28 H 0.35 7.01 9.00 45.56 0.41 7.42 15 LS Contribution 261.21 15.07 3.94 3.94 Total: -1.00 -31.19 261.21 -6.96 -38.14 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -1.53 Total: 4.10 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: -2.07 Total: -21.43 kcal Atomic # 7 Polarization: -21.30 SS G_CDS: 0.61 Total: -20.68 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.39 Total: -16.18 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.05 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -2.48 Total: -2.93 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.19 -6.96 -38.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396380549.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.607 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds