Wall clock time and date at job start Mon Mar 30 2020 05:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35945 * 116.99841 * 2 1 4 4 C 1.38149 * 119.80753 * 359.72900 * 3 2 1 5 5 C 1.38574 * 120.04608 * 180.31763 * 4 3 2 6 6 C 1.37382 * 120.28734 * 359.93372 * 5 4 3 7 7 C 1.40944 * 120.54474 * 0.03910 * 6 5 4 8 8 C 1.46555 * 128.66696 * 179.97438 * 7 6 5 9 9 C 1.40686 * 123.23847 * 0.02660 * 8 7 6 10 10 H 1.07994 * 119.99602 * 33.73742 * 9 8 7 11 11 C 1.39547 * 119.99929 * 213.74403 * 9 8 7 12 12 N 1.31256 * 120.00338 * 20.57067 * 11 9 8 13 13 Si 1.86796 * 119.99861 * 200.56715 * 11 9 8 14 14 H 1.48505 * 109.47058 * 60.00176 * 13 11 9 15 15 H 1.48500 * 109.47286 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47580 * 300.00058 * 13 11 9 17 17 C 1.37462 * 113.52834 * 180.02562 * 8 7 6 18 18 O 1.35263 * 124.58563 * 180.02562 * 17 8 7 19 19 S 1.75185 * 110.83488 * 359.97438 * 17 8 7 20 20 C 1.39164 * 119.09657 * 0.02562 * 7 6 5 21 21 H 1.08997 * 109.47312 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47430 * 299.99799 * 1 2 3 23 23 H 1.09006 * 109.47253 * 59.99502 * 1 2 3 24 24 H 1.07999 * 119.98164 * 0.27695 * 4 3 2 25 25 H 1.08000 * 119.85661 * 179.97438 * 5 4 3 26 26 H 1.07995 * 119.72608 * 180.02562 * 6 5 4 27 27 H 0.96996 * 120.00385 * 179.97438 * 12 11 9 28 28 H 0.96701 * 114.00453 * 179.97438 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2898 2.3674 -0.0057 5 6 1.9137 3.6047 -0.0123 6 6 3.2850 3.6892 -0.0120 7 6 4.0746 2.5217 -0.0057 8 6 5.5354 2.4043 -0.0048 9 6 6.3983 3.5154 -0.0099 10 1 6.1151 4.4214 0.5051 11 6 7.6201 3.4468 -0.6806 12 7 7.8039 2.5484 -1.6197 13 14 8.9942 4.6338 -0.2421 14 1 9.3593 4.4621 1.1871 15 1 10.1790 4.3557 -1.0930 16 1 8.5365 6.0277 -0.4719 17 6 5.9814 1.1040 0.0016 18 8 7.2839 0.7391 0.0042 19 16 4.6349 -0.0166 0.0074 20 6 3.4464 1.2799 -0.0003 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 0.2115 2.3068 -0.0056 25 1 1.3195 4.5065 -0.0172 26 1 3.7618 4.6582 -0.0168 27 1 8.6530 2.5010 -2.0861 28 1 7.4244 -0.2176 0.0091 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396380549.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:44 Heat of formation + Delta-G solvation = -55.953838 kcal Electronic energy + Delta-G solvation = -15697.974540 eV Core-core repulsion = 12998.206210 eV Total energy + Delta-G solvation = -2699.768330 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.94120 -39.05562 -37.93673 -35.54975 -33.82355 -31.26306 -29.54738 -28.26096 -26.94124 -24.01524 -22.89176 -21.34381 -19.95409 -18.64685 -18.09272 -17.44436 -16.79749 -16.62949 -16.54551 -15.57355 -15.26319 -14.84164 -14.67626 -14.26300 -13.66912 -13.54910 -13.24170 -13.02595 -12.78993 -12.62237 -12.34445 -12.05153 -11.89146 -11.71631 -11.21302 -11.13844 -10.75037 -9.64427 -8.73379 -8.52240 -8.20127 -6.06973 0.17076 0.48016 0.90276 1.30761 1.40806 1.41973 1.51015 1.95845 2.32289 2.42288 2.85480 3.37130 3.60005 4.05390 4.16034 4.38189 4.46566 4.48865 4.61513 4.74624 4.77511 5.13780 5.28163 5.33158 5.43881 5.66255 5.86108 5.98578 6.48335 6.51680 6.78522 7.08044 7.32159 8.59208 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.034121 B = 0.007686 C = 0.006455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.419156 B = 3642.283528 C = 4336.681096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.149 3.851 4 C -0.211 4.211 5 C -0.077 4.077 6 C -0.139 4.139 7 C -0.031 4.031 8 C 0.003 3.997 9 C -0.478 4.478 10 H 0.070 0.930 11 C 0.038 3.962 12 N -0.811 5.811 13 Si 0.971 3.029 14 H -0.271 1.271 15 H -0.275 1.275 16 H -0.260 1.260 17 C -0.100 4.100 18 O -0.422 6.422 19 S -0.001 6.001 20 C -0.190 4.190 21 H 0.118 0.882 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.169 0.831 25 H 0.164 0.836 26 H 0.122 0.878 27 H 0.276 0.724 28 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.650 -1.557 2.210 11.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.098 3.902 4 C -0.232 4.232 5 C -0.098 4.098 6 C -0.158 4.158 7 C -0.040 4.040 8 C -0.006 4.006 9 C -0.511 4.511 10 H 0.088 0.912 11 C -0.176 4.176 12 N -0.439 5.439 13 Si 0.793 3.207 14 H -0.196 1.196 15 H -0.200 1.200 16 H -0.184 1.184 17 C -0.260 4.260 18 O -0.223 6.223 19 S 0.255 5.745 20 C -0.305 4.305 21 H 0.136 0.864 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.186 0.814 25 H 0.182 0.818 26 H 0.140 0.860 27 H 0.086 0.914 28 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -11.291 -2.781 2.040 11.805 hybrid contribution 1.017 1.140 -0.091 1.530 sum -10.274 -1.640 1.949 10.585 Atomic orbital electron populations 1.23387 0.75999 1.05572 1.02638 1.86051 1.23930 1.26657 1.88685 1.18370 0.88463 0.85880 0.97440 1.21255 1.00830 0.90694 1.10444 1.21023 0.92895 0.98440 0.97448 1.21025 0.94146 0.96526 1.04144 1.19426 0.93028 0.92765 0.98822 1.17221 0.89412 0.91988 1.02020 1.18717 1.02379 0.98949 1.31065 0.91161 1.26323 1.00863 0.97579 0.92852 1.69982 1.24940 1.32386 1.16544 0.85434 0.77452 0.79024 0.78769 1.19601 1.20003 1.18389 1.22630 0.85017 0.94208 1.24154 1.84833 1.19197 1.25999 1.92285 1.82920 0.96963 1.09637 1.84981 1.21587 0.94649 0.96758 1.17482 0.86364 0.91158 0.91355 0.81408 0.81803 0.86027 0.91428 0.78121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.80 113.37 1.11 1.46 15 2 O -0.34 -11.21 10.45 -92.93 -0.97 -12.18 15 3 C 0.15 5.60 6.72 22.72 0.15 5.76 15 4 C -0.21 -6.39 9.02 22.33 0.20 -6.19 15 5 C -0.08 -2.44 10.01 22.15 0.22 -2.22 15 6 C -0.14 -5.74 9.82 22.73 0.22 -5.51 15 7 C -0.03 -1.56 6.00 -20.22 -0.12 -1.68 15 8 C 0.00 0.16 5.52 -20.69 -0.11 0.05 15 9 C -0.48 -27.38 8.88 23.18 0.21 -27.17 15 10 H 0.07 3.86 7.92 -2.91 -0.02 3.84 15 11 C 0.04 2.08 4.71 85.09 0.40 2.48 15 12 N -0.81 -46.12 11.05 21.78 0.24 -45.88 15 13 Si 0.97 42.23 29.61 68.60 2.03 44.26 15 14 H -0.27 -11.77 7.11 99.48 0.71 -11.07 15 15 H -0.28 -11.47 7.11 99.48 0.71 -10.77 15 16 H -0.26 -10.68 7.11 99.48 0.71 -9.97 15 17 C -0.10 -5.39 7.05 67.64 0.48 -4.92 15 18 O -0.42 -22.02 10.83 -85.47 -0.93 -22.94 15 19 S 0.00 -0.06 23.07 -56.49 -1.30 -1.36 15 20 C -0.19 -8.80 6.37 22.97 0.15 -8.65 15 21 H 0.12 1.72 8.14 -2.39 -0.02 1.70 15 22 H 0.07 1.13 7.65 -2.39 -0.02 1.12 15 23 H 0.07 1.13 7.64 -2.38 -0.02 1.11 15 24 H 0.17 3.47 6.25 -2.91 -0.02 3.45 15 25 H 0.16 3.63 8.06 -2.91 -0.02 3.61 15 26 H 0.12 4.91 8.03 -2.91 -0.02 4.88 15 27 H 0.28 14.56 8.31 -92.71 -0.77 13.79 15 28 H 0.37 15.41 9.00 -74.06 -0.67 14.74 15 Total: -1.00 -70.77 261.21 2.52 -68.25 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.54 Total: 16.45 kcal Atomic # 6 Polarization: -49.49 SS G_CDS: 2.90 Total: -46.59 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.24 Total: -45.88 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -1.90 Total: -35.13 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -1.30 Total: -1.36 kcal Total: -70.77 2.52 -68.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396380549.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.295 kcal (2) G-P(sol) polarization free energy of solvation -70.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds