Wall clock time and date at job start Mon Mar 30 2020 05:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35743 * 116.99715 * 2 1 4 4 C 1.39051 * 120.15902 * 268.94409 * 3 2 1 5 5 O 1.36066 * 119.70550 * 0.03038 * 4 3 2 6 6 C 1.37727 * 120.58451 * 180.02562 * 4 3 2 7 7 C 1.41701 * 120.98320 * 359.96989 * 6 4 3 8 8 C 1.45454 * 128.98573 * 180.02562 * 7 6 4 9 9 C 1.31921 * 114.88146 * 179.97438 * 8 7 6 10 10 S 1.75297 * 111.28407 * 359.97438 * 9 8 7 11 11 C 1.39182 * 119.13906 * 0.03129 * 7 6 4 12 12 C 1.40826 * 120.15397 * 88.97262 * 3 2 1 13 13 C 1.40777 * 120.10559 * 359.95282 * 12 3 2 14 14 H 1.08005 * 119.99696 * 315.65034 * 13 12 3 15 15 C 1.39843 * 120.00388 * 135.64455 * 13 12 3 16 16 N 1.30949 * 120.00240 * 152.21372 * 15 13 12 17 17 Si 1.86804 * 119.99856 * 332.22090 * 15 13 12 18 18 H 1.48506 * 109.47044 * 94.78663 * 17 15 13 19 19 H 1.48497 * 109.46804 * 214.78894 * 17 15 13 20 20 H 1.48497 * 109.47076 * 334.78600 * 17 15 13 21 21 H 1.09001 * 109.46991 * 305.06833 * 1 2 3 22 22 H 1.08998 * 109.47739 * 65.06954 * 1 2 3 23 23 H 1.08998 * 109.47029 * 185.06896 * 1 2 3 24 24 H 0.96706 * 114.00459 * 89.99501 * 5 4 3 25 25 H 1.07996 * 119.50937 * 180.02562 * 6 4 3 26 26 H 1.08004 * 122.55558 * 359.97438 * 8 7 6 27 27 H 1.08007 * 124.35636 * 180.02562 * 9 8 7 28 28 H 0.96992 * 120.00223 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 2.3821 1.8219 -1.2021 5 8 2.0907 1.2037 -2.3786 6 6 3.0079 3.0487 -1.2123 7 6 3.3232 3.7169 -0.0031 8 6 3.9745 5.0032 0.1886 9 6 4.1314 5.3637 1.4479 10 16 3.4903 4.1526 2.5411 11 6 2.9927 3.1172 1.2086 12 6 2.3469 1.8497 1.2175 13 6 2.0094 1.2379 2.4396 14 1 1.0391 0.7803 2.5646 15 6 2.9305 1.2224 3.4917 16 7 2.5088 1.1772 4.7306 17 14 4.7627 1.2664 3.1298 18 1 5.2458 2.6694 3.1909 19 1 5.4859 0.4494 4.1371 20 1 5.0127 0.7154 1.7737 21 1 -0.3633 0.5905 0.8411 22 1 -0.3634 0.4332 -0.9318 23 1 -0.3633 -1.0236 0.0908 24 1 1.2196 1.4262 -2.7348 25 1 3.2613 3.5088 -2.1559 26 1 4.3045 5.6164 -0.6370 27 1 4.5945 6.2866 1.7646 28 1 3.1477 1.1669 5.4603 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396380607.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:46 Heat of formation + Delta-G solvation = -58.757597 kcal Electronic energy + Delta-G solvation = -16170.551061 eV Core-core repulsion = 13470.661151 eV Total energy + Delta-G solvation = -2699.889910 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.88251 -38.49606 -38.00472 -36.00070 -34.29698 -31.76211 -29.48050 -27.81270 -26.82534 -24.08025 -23.07910 -21.28420 -20.05573 -18.68690 -18.34293 -17.57950 -17.24583 -16.64926 -16.29144 -15.67680 -15.33017 -14.84877 -14.59356 -14.36602 -14.12779 -13.85568 -13.52181 -13.17839 -12.98562 -12.54102 -12.37851 -12.13288 -11.70297 -11.39688 -11.25000 -11.16877 -10.39852 -9.92549 -9.08688 -8.98880 -8.40611 -6.51055 -0.05401 0.44413 0.81843 1.16591 1.30792 1.37556 1.45729 1.53925 2.11527 2.47312 2.91336 3.28867 3.38515 4.05546 4.30641 4.45096 4.55670 4.58415 4.69693 4.77384 4.97118 5.03429 5.10629 5.14593 5.50071 5.55214 5.77684 5.82408 6.11686 6.38456 6.65029 6.74923 7.18015 8.08156 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.018704 B = 0.013950 C = 0.009294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.657664 B = 2006.654480 C = 3012.127225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.335 6.335 3 C -0.050 4.050 4 C 0.124 3.876 5 O -0.499 6.499 6 C -0.202 4.202 7 C -0.049 4.049 8 C -0.129 4.129 9 C -0.194 4.194 10 S 0.044 5.956 11 C -0.220 4.220 12 C 0.098 3.902 13 C -0.484 4.484 14 H 0.066 0.934 15 C 0.082 3.918 16 N -0.820 5.820 17 Si 0.866 3.134 18 H -0.184 1.184 19 H -0.260 1.260 20 H -0.279 1.279 21 H 0.023 0.977 22 H 0.054 0.946 23 H 0.101 0.899 24 H 0.399 0.601 25 H 0.146 0.854 26 H 0.175 0.825 27 H 0.199 0.801 28 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.409 6.995 -7.095 10.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.251 6.251 3 C -0.099 4.099 4 C 0.078 3.922 5 O -0.311 6.311 6 C -0.224 4.224 7 C -0.058 4.058 8 C -0.160 4.160 9 C -0.327 4.327 10 S 0.307 5.693 11 C -0.335 4.335 12 C 0.092 3.908 13 C -0.513 4.513 14 H 0.084 0.916 15 C -0.137 4.137 16 N -0.445 5.445 17 Si 0.687 3.313 18 H -0.106 1.106 19 H -0.185 1.185 20 H -0.204 1.204 21 H 0.042 0.958 22 H 0.073 0.927 23 H 0.120 0.880 24 H 0.256 0.744 25 H 0.163 0.837 26 H 0.192 0.808 27 H 0.216 0.784 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.985 6.522 -5.109 8.519 hybrid contribution -0.354 -0.227 -1.200 1.272 sum 1.631 6.295 -6.310 9.060 Atomic orbital electron populations 1.23001 0.80311 1.03100 0.99770 1.85958 1.19812 1.25229 1.94138 1.19205 1.09714 0.89524 0.91454 1.18299 0.99055 0.90750 0.84085 1.84777 1.40738 1.70282 1.35293 1.20685 1.09714 0.95104 0.96916 1.19468 0.98993 0.95169 0.92154 1.21150 1.01936 0.94768 0.98108 1.25552 1.06800 1.04014 0.96356 1.84385 1.61984 1.12951 1.09962 1.22883 1.14621 0.99779 0.96221 1.17363 0.90947 0.89156 0.93291 1.18910 1.02414 1.34902 0.95092 0.91638 1.26222 1.03593 0.90366 0.93488 1.69808 1.39403 1.34722 1.00536 0.86996 0.80383 0.84621 0.79263 1.10649 1.18481 1.20359 0.95832 0.92716 0.88016 0.74370 0.83666 0.80818 0.78387 0.89423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.21 11.08 113.37 1.26 2.47 15 2 O -0.33 -16.00 9.62 -76.41 -0.74 -16.73 15 3 C -0.05 -2.47 5.76 23.10 0.13 -2.34 15 4 C 0.12 5.26 6.67 22.34 0.15 5.40 15 5 O -0.50 -17.79 13.26 -80.03 -1.06 -18.85 15 6 C -0.20 -7.85 10.01 23.00 0.23 -7.62 15 7 C -0.05 -2.01 6.03 -20.34 -0.12 -2.13 15 8 C -0.13 -4.10 10.39 23.28 0.24 -3.86 15 9 C -0.19 -6.04 11.03 66.97 0.74 -5.31 15 10 S 0.04 1.83 18.22 -56.49 -1.03 0.80 15 11 C -0.22 -10.38 4.98 23.50 0.12 -10.26 15 12 C 0.10 5.15 4.61 -21.03 -0.10 5.05 15 13 C -0.48 -27.38 8.82 23.28 0.21 -27.18 15 14 H 0.07 3.98 7.37 -2.91 -0.02 3.96 15 15 C 0.08 4.42 4.56 85.21 0.39 4.81 15 16 N -0.82 -44.24 13.93 21.81 0.30 -43.93 15 17 Si 0.87 40.87 25.14 68.60 1.72 42.59 15 18 H -0.18 -7.78 5.45 99.38 0.54 -7.24 15 19 H -0.26 -11.48 7.11 99.48 0.71 -10.78 15 20 H -0.28 -14.47 7.11 99.48 0.71 -13.76 15 21 H 0.02 0.94 7.51 -2.39 -0.02 0.92 15 22 H 0.05 1.68 8.14 -2.39 -0.02 1.66 15 23 H 0.10 3.19 8.14 -2.39 -0.02 3.17 15 24 H 0.40 9.75 9.07 -74.05 -0.67 9.08 15 25 H 0.15 4.58 8.06 -2.91 -0.02 4.55 15 26 H 0.17 4.02 8.06 -2.91 -0.02 4.00 15 27 H 0.20 4.35 8.06 -2.91 -0.02 4.33 15 28 H 0.29 14.36 8.30 -92.71 -0.77 13.59 15 Total: -1.00 -66.42 256.49 2.81 -63.61 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.37 Total: 13.48 kcal Atomic # 6 Polarization: -44.21 SS G_CDS: 3.24 Total: -40.97 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.30 Total: -43.93 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -1.80 Total: -35.58 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 1.72 Total: 42.59 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.03 Total: 0.80 kcal Total: -66.42 2.81 -63.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396380607.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.850 kcal (2) G-P(sol) polarization free energy of solvation -66.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds