Wall clock time and date at job start Mon Mar 30 2020 05:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36026 * 116.99576 * 2 1 4 4 C 1.40111 * 119.87607 * 90.00092 * 3 2 1 5 5 S 1.75785 * 130.14846 * 359.69906 * 4 3 2 6 6 C 1.69985 * 93.22638 * 180.02562 * 5 4 3 7 7 C 1.36466 * 111.94036 * 359.97438 * 6 5 4 8 8 C 1.40810 * 123.29645 * 179.97438 * 7 6 5 9 9 H 1.07994 * 119.99820 * 202.42298 * 8 7 6 10 10 C 1.39663 * 119.99697 * 22.42758 * 8 7 6 11 11 N 1.31101 * 120.00121 * 11.09419 * 10 8 7 12 12 Si 1.86793 * 119.99660 * 191.10292 * 10 8 7 13 13 H 1.48499 * 109.47639 * 59.99831 * 12 10 8 14 14 H 1.48499 * 109.47261 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47308 * 299.99521 * 12 10 8 16 16 C 1.39293 * 119.64390 * 179.71901 * 4 3 2 17 17 C 1.40693 * 119.35064 * 0.02562 * 16 4 3 18 18 C 1.37405 * 120.48167 * 359.97438 * 17 16 4 19 19 C 1.38573 * 119.87635 * 269.72401 * 3 2 1 20 20 O 1.35993 * 119.98915 * 0.28165 * 19 3 2 21 21 H 1.08998 * 109.47165 * 299.99767 * 1 2 3 22 22 H 1.09004 * 109.47271 * 60.00081 * 1 2 3 23 23 H 1.09008 * 109.46735 * 180.02562 * 1 2 3 24 24 H 1.07996 * 124.02818 * 180.02562 * 6 5 4 25 25 H 0.96999 * 120.00248 * 180.02562 * 11 10 8 26 26 H 1.07993 * 119.75993 * 180.02562 * 17 16 4 27 27 H 1.07997 * 119.87366 * 180.02562 * 18 17 16 28 28 H 0.96701 * 114.00289 * 89.99957 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2120 0.0000 4 6 2.3633 1.8339 1.2149 5 16 2.0844 1.3020 2.8670 6 6 2.7977 2.6921 3.5367 7 6 3.2433 3.5507 2.5741 8 6 3.8728 4.7766 2.8632 9 1 3.8808 5.5664 2.1267 10 6 4.4870 4.9711 4.1024 11 7 4.6705 3.9546 4.9097 12 14 5.0466 6.6795 4.6095 13 1 3.8774 7.5945 4.6411 14 1 5.6631 6.6183 5.9591 15 1 6.0438 7.1843 3.6318 16 6 3.0008 3.0724 1.2093 17 6 3.3164 3.6800 -0.0198 18 6 3.0007 3.0604 -1.2050 19 6 2.3649 1.8245 -1.2016 20 8 2.0549 1.2162 -2.3777 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0278 0.0005 24 1 2.8883 2.8736 4.5974 25 1 5.0967 4.0897 5.7705 26 1 3.8110 4.6399 -0.0319 27 1 3.2478 3.5355 -2.1428 28 1 1.1798 1.4446 -2.7200 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396381812.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:47 Heat of formation + Delta-G solvation = -47.434185 kcal Electronic energy + Delta-G solvation = -15646.319358 eV Core-core repulsion = 12946.920469 eV Total energy + Delta-G solvation = -2699.398890 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.67886 -37.18480 -36.77053 -34.33736 -31.91169 -29.69848 -27.66730 -26.51349 -25.86147 -22.54554 -21.65091 -19.81038 -18.30862 -17.28895 -16.44428 -15.99587 -15.50567 -15.02916 -14.95056 -14.24568 -13.76766 -13.75963 -13.00213 -12.47958 -12.15125 -11.84672 -11.68458 -11.32351 -11.15750 -11.11324 -10.66601 -10.50597 -10.09050 -9.94028 -9.56705 -9.33066 -9.22173 -8.40529 -7.42235 -6.75977 -6.65553 -4.34915 1.54942 1.77551 2.74285 2.95566 3.06816 3.09237 3.51185 3.76548 3.96396 4.07886 4.33368 4.60934 5.24077 5.41298 5.50669 5.56639 5.73623 5.84096 5.95998 6.15106 6.32886 6.77275 6.81092 6.99518 7.14007 7.22563 7.60985 7.66253 7.92493 8.16876 8.41863 8.73348 8.84944 10.26399 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.033516 B = 0.007244 C = 0.006115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.224164 B = 3864.595108 C = 4578.015894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.326 6.326 3 C 0.088 3.912 4 C -0.152 4.152 5 S 0.064 5.936 6 C -0.352 4.352 7 C 0.077 3.923 8 C -0.434 4.434 9 H 0.075 0.925 10 C 0.068 3.932 11 N -0.800 5.800 12 Si 0.914 3.086 13 H -0.265 1.265 14 H -0.279 1.279 15 H -0.267 1.267 16 C -0.057 4.057 17 C -0.062 4.062 18 C -0.157 4.157 19 C 0.076 3.924 20 O -0.489 6.489 21 H 0.046 0.954 22 H 0.037 0.963 23 H 0.089 0.911 24 H 0.165 0.835 25 H 0.278 0.722 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.074 -1.237 -6.902 9.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.243 6.243 3 C 0.038 3.962 4 C -0.268 4.268 5 S 0.329 5.671 6 C -0.488 4.488 7 C 0.069 3.931 8 C -0.467 4.467 9 H 0.094 0.906 10 C -0.148 4.148 11 N -0.427 5.427 12 Si 0.739 3.261 13 H -0.190 1.190 14 H -0.204 1.204 15 H -0.191 1.191 16 C -0.068 4.068 17 C -0.082 4.082 18 C -0.180 4.180 19 C 0.029 3.971 20 O -0.297 6.297 21 H 0.065 0.935 22 H 0.056 0.944 23 H 0.107 0.893 24 H 0.182 0.818 25 H 0.089 0.911 26 H 0.145 0.855 27 H 0.143 0.857 28 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -5.950 -2.956 -5.811 8.827 hybrid contribution 0.449 2.383 -0.306 2.444 sum -5.501 -0.573 -6.118 8.247 Atomic orbital electron populations 1.22889 0.80352 1.02562 1.00209 1.86109 1.18989 1.24876 1.94298 1.18190 1.00502 0.87445 0.90079 1.22909 1.07347 0.98932 0.97650 1.81996 1.65379 1.26210 0.93535 1.24522 1.19632 1.00923 1.03697 1.17312 0.94377 0.95235 0.86201 1.18886 1.30102 0.98222 0.99528 0.90639 1.25769 0.94473 0.98369 0.96175 1.69847 1.33042 1.30976 1.08869 0.86268 0.79454 0.82178 0.78207 1.19017 1.20420 1.19136 1.19738 0.98848 0.92967 0.95257 1.20817 0.97905 0.99378 0.90055 1.20873 1.04068 0.94718 0.98339 1.18264 1.02738 0.92233 0.83833 1.84905 1.38460 1.70391 1.35927 0.93494 0.94408 0.89277 0.81774 0.91093 0.85504 0.85652 0.77146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.13 101.05 1.12 1.61 15 2 O -0.33 -6.19 10.15 -34.93 -0.35 -6.54 15 3 C 0.09 1.79 5.76 -38.76 -0.22 1.57 15 4 C -0.15 -3.47 6.39 -38.49 -0.25 -3.72 15 5 S 0.06 1.46 22.92 -107.50 -2.46 -1.00 15 6 C -0.35 -9.17 9.51 30.09 0.29 -8.88 15 7 C 0.08 2.03 5.69 -106.17 -0.60 1.43 15 8 C -0.43 -11.30 9.07 -38.08 -0.35 -11.65 15 9 H 0.08 1.84 7.68 -52.49 -0.40 1.44 15 10 C 0.07 1.70 5.36 -17.33 -0.09 1.61 15 11 N -0.80 -20.90 10.79 55.54 0.60 -20.31 15 12 Si 0.91 18.71 29.57 -169.99 -5.03 13.68 15 13 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15 14 H -0.28 -5.62 7.11 56.52 0.40 -5.21 15 15 H -0.27 -5.37 7.11 56.52 0.40 -4.96 15 16 C -0.06 -1.36 6.02 -105.19 -0.63 -1.99 15 17 C -0.06 -1.25 9.85 -38.96 -0.38 -1.63 15 18 C -0.16 -2.81 9.95 -39.61 -0.39 -3.20 15 19 C 0.08 1.41 6.71 -39.18 -0.26 1.15 15 20 O -0.49 -7.72 13.27 -34.83 -0.46 -8.18 15 21 H 0.05 0.68 8.14 -51.93 -0.42 0.25 15 22 H 0.04 0.45 8.14 -51.93 -0.42 0.03 15 23 H 0.09 1.01 8.14 -51.92 -0.42 0.59 15 24 H 0.17 4.51 6.26 -52.49 -0.33 4.18 15 25 H 0.28 6.67 8.30 -40.82 -0.34 6.33 15 26 H 0.13 2.36 7.87 -52.49 -0.41 1.94 15 27 H 0.13 1.84 8.06 -52.49 -0.42 1.42 15 28 H 0.37 3.95 9.06 45.56 0.41 4.36 15 LS Contribution 265.12 15.07 4.00 4.00 Total: -1.00 -29.62 265.12 -7.05 -36.66 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -1.56 Total: 5.40 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -1.77 Total: -23.70 kcal Atomic # 7 Polarization: -20.90 SS G_CDS: 0.60 Total: -20.31 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.82 Total: -14.73 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.46 Total: -1.00 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.62 -7.05 -36.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396381812.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.774 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds