Wall clock time and date at job start Mon Mar 30 2020 05:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36026 * 116.99576 * 2 1 4 4 C 1.40111 * 119.87607 * 90.00092 * 3 2 1 5 5 S 1.75785 * 130.14846 * 359.69906 * 4 3 2 6 6 C 1.69985 * 93.22638 * 180.02562 * 5 4 3 7 7 C 1.36466 * 111.94036 * 359.97438 * 6 5 4 8 8 C 1.40810 * 123.29645 * 179.97438 * 7 6 5 9 9 H 1.07994 * 119.99820 * 202.42298 * 8 7 6 10 10 C 1.39663 * 119.99697 * 22.42758 * 8 7 6 11 11 N 1.31101 * 120.00121 * 11.09419 * 10 8 7 12 12 Si 1.86793 * 119.99660 * 191.10292 * 10 8 7 13 13 H 1.48499 * 109.47639 * 59.99831 * 12 10 8 14 14 H 1.48499 * 109.47261 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47308 * 299.99521 * 12 10 8 16 16 C 1.39293 * 119.64390 * 179.71901 * 4 3 2 17 17 C 1.40693 * 119.35064 * 0.02562 * 16 4 3 18 18 C 1.37405 * 120.48167 * 359.97438 * 17 16 4 19 19 C 1.38573 * 119.87635 * 269.72401 * 3 2 1 20 20 O 1.35993 * 119.98915 * 0.28165 * 19 3 2 21 21 H 1.08998 * 109.47165 * 299.99767 * 1 2 3 22 22 H 1.09004 * 109.47271 * 60.00081 * 1 2 3 23 23 H 1.09008 * 109.46735 * 180.02562 * 1 2 3 24 24 H 1.07996 * 124.02818 * 180.02562 * 6 5 4 25 25 H 0.96999 * 120.00248 * 180.02562 * 11 10 8 26 26 H 1.07993 * 119.75993 * 180.02562 * 17 16 4 27 27 H 1.07997 * 119.87366 * 180.02562 * 18 17 16 28 28 H 0.96701 * 114.00289 * 89.99957 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2120 0.0000 4 6 2.3633 1.8339 1.2149 5 16 2.0844 1.3020 2.8670 6 6 2.7977 2.6921 3.5367 7 6 3.2433 3.5507 2.5741 8 6 3.8728 4.7766 2.8632 9 1 3.8808 5.5664 2.1267 10 6 4.4870 4.9711 4.1024 11 7 4.6705 3.9546 4.9097 12 14 5.0466 6.6795 4.6095 13 1 3.8774 7.5945 4.6411 14 1 5.6631 6.6183 5.9591 15 1 6.0438 7.1843 3.6318 16 6 3.0008 3.0724 1.2093 17 6 3.3164 3.6800 -0.0198 18 6 3.0007 3.0604 -1.2050 19 6 2.3649 1.8245 -1.2016 20 8 2.0549 1.2162 -2.3777 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0278 0.0005 24 1 2.8883 2.8736 4.5974 25 1 5.0967 4.0897 5.7705 26 1 3.8110 4.6399 -0.0319 27 1 3.2478 3.5355 -2.1428 28 1 1.1798 1.4446 -2.7200 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396381812.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:46 Heat of formation + Delta-G solvation = -66.713799 kcal Electronic energy + Delta-G solvation = -15647.155385 eV Core-core repulsion = 12946.920469 eV Total energy + Delta-G solvation = -2700.234917 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.16375 -38.72712 -38.16987 -36.08024 -33.66754 -31.24062 -29.30127 -28.01291 -27.48737 -24.17223 -23.21576 -21.57631 -19.73457 -18.90803 -18.16732 -17.60154 -16.94446 -16.70113 -16.41640 -15.66776 -15.30350 -15.13230 -14.64874 -14.12112 -13.72481 -13.49986 -13.23755 -12.82930 -12.77964 -12.63195 -12.36873 -12.12441 -11.67047 -11.58024 -11.28458 -11.04459 -10.78234 -10.06516 -9.12418 -8.60174 -8.45835 -6.30377 -0.02815 0.20735 1.04669 1.30188 1.39531 1.51278 1.82350 1.93251 2.23335 2.52988 2.83412 3.24206 3.34569 4.04990 4.25308 4.34761 4.45095 4.50761 4.55321 4.73451 4.86171 5.15604 5.22390 5.27554 5.43097 5.57619 5.82713 5.96701 6.35287 6.50383 6.81128 6.91433 6.93919 8.40594 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.033516 B = 0.007244 C = 0.006115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.224164 B = 3864.595108 C = 4578.015894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.344 6.344 3 C 0.078 3.922 4 C -0.167 4.167 5 S 0.072 5.928 6 C -0.388 4.388 7 C 0.056 3.944 8 C -0.464 4.464 9 H 0.084 0.916 10 C 0.023 3.977 11 N -0.835 5.835 12 Si 0.989 3.011 13 H -0.260 1.260 14 H -0.274 1.274 15 H -0.256 1.256 16 C -0.091 4.091 17 C -0.070 4.070 18 C -0.138 4.138 19 C 0.094 3.906 20 O -0.487 6.487 21 H 0.036 0.964 22 H 0.063 0.937 23 H 0.117 0.883 24 H 0.140 0.860 25 H 0.283 0.717 26 H 0.139 0.861 27 H 0.168 0.832 28 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.341 -0.588 -9.482 11.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.261 6.261 3 C 0.028 3.972 4 C -0.283 4.283 5 S 0.336 5.664 6 C -0.524 4.524 7 C 0.047 3.953 8 C -0.496 4.496 9 H 0.102 0.898 10 C -0.190 4.190 11 N -0.462 5.462 12 Si 0.810 3.190 13 H -0.184 1.184 14 H -0.199 1.199 15 H -0.180 1.180 16 C -0.101 4.101 17 C -0.090 4.090 18 C -0.159 4.159 19 C 0.046 3.954 20 O -0.299 6.299 21 H 0.055 0.945 22 H 0.082 0.918 23 H 0.135 0.865 24 H 0.157 0.843 25 H 0.093 0.907 26 H 0.157 0.843 27 H 0.185 0.815 28 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -6.251 -2.318 -8.427 10.745 hybrid contribution 0.443 2.065 0.290 2.132 sum -5.808 -0.253 -8.137 10.001 Atomic orbital electron populations 1.23196 0.77748 1.04749 1.01000 1.86060 1.21504 1.24169 1.94346 1.18373 1.01008 0.87935 0.89928 1.23128 1.07856 0.99256 0.98041 1.81596 1.65717 1.24886 0.94240 1.24377 1.22036 1.03162 1.02845 1.17768 0.94100 0.95541 0.87881 1.19278 1.30932 0.98762 1.00675 0.89756 1.26757 0.94077 1.02449 0.95670 1.69969 1.33599 1.33318 1.09355 0.85130 0.79153 0.76707 0.77985 1.18406 1.19874 1.18037 1.19870 1.00829 0.94003 0.95410 1.21023 0.98187 1.00113 0.89651 1.21253 1.01674 0.94054 0.98949 1.18310 1.01181 0.91796 0.84074 1.84836 1.40683 1.70179 1.34250 0.94499 0.91824 0.86483 0.84302 0.90671 0.84289 0.81499 0.73773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.13 113.37 1.26 1.95 15 2 O -0.34 -12.38 10.15 -79.40 -0.81 -13.19 15 3 C 0.08 3.05 5.76 22.80 0.13 3.19 15 4 C -0.17 -7.66 6.39 22.98 0.15 -7.51 15 5 S 0.07 3.41 22.92 -56.49 -1.30 2.12 15 6 C -0.39 -21.44 9.51 67.41 0.64 -20.80 15 7 C 0.06 3.07 5.69 -20.87 -0.12 2.95 15 8 C -0.46 -24.80 9.07 23.24 0.21 -24.59 15 9 H 0.08 4.17 7.68 -2.91 -0.02 4.14 15 10 C 0.02 1.19 5.36 85.15 0.46 1.64 15 11 N -0.83 -45.38 10.79 21.79 0.24 -45.15 15 12 Si 0.99 38.58 29.57 68.60 2.03 40.61 15 13 H -0.26 -9.80 7.11 99.48 0.71 -9.10 15 14 H -0.27 -10.34 7.11 99.48 0.71 -9.63 15 15 H -0.26 -9.50 7.11 99.48 0.71 -8.79 15 16 C -0.09 -4.37 6.02 -20.23 -0.12 -4.49 15 17 C -0.07 -2.73 9.85 22.67 0.22 -2.51 15 18 C -0.14 -4.40 9.95 22.25 0.22 -4.18 15 19 C 0.09 3.16 6.71 22.53 0.15 3.31 15 20 O -0.49 -13.07 13.27 -79.03 -1.05 -14.12 15 21 H 0.04 1.02 8.14 -2.39 -0.02 1.00 15 22 H 0.06 1.29 8.14 -2.39 -0.02 1.27 15 23 H 0.12 2.31 8.14 -2.38 -0.02 2.29 15 24 H 0.14 8.21 6.26 -2.91 -0.02 8.20 15 25 H 0.28 14.06 8.30 -92.71 -0.77 13.29 15 26 H 0.14 4.96 7.87 -2.91 -0.02 4.94 15 27 H 0.17 3.96 8.06 -2.91 -0.02 3.94 15 28 H 0.40 6.29 9.06 -74.06 -0.67 5.61 15 Total: -1.00 -66.47 265.12 2.85 -63.61 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.53 Total: 17.16 kcal Atomic # 6 Polarization: -54.25 SS G_CDS: 3.20 Total: -51.05 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: 0.24 Total: -45.15 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -1.85 Total: -27.31 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -1.30 Total: 2.12 kcal Total: -66.47 2.85 -63.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396381812.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.100 kcal (2) G-P(sol) polarization free energy of solvation -66.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds