Wall clock time and date at job start Mon Mar 30 2020 05:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36113 * 116.99944 * 2 1 4 4 C 1.33199 * 122.16040 * 359.70730 * 3 2 1 5 5 S 1.75489 * 110.65994 * 179.86060 * 4 3 2 6 6 C 1.76060 * 91.57831 * 0.33814 * 5 4 3 7 7 C 1.39532 * 130.51142 * 179.83243 * 6 5 4 8 8 C 1.38688 * 121.40648 * 179.97438 * 7 6 5 9 9 O 1.35910 * 119.51081 * 180.02562 * 8 7 6 10 10 C 1.38057 * 120.97345 * 0.02562 * 8 7 6 11 11 C 1.40244 * 120.08595 * 359.97438 * 10 8 7 12 12 C 1.40567 * 120.36032 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99722 * 206.48600 * 12 11 10 14 14 C 1.39870 * 120.00174 * 26.49161 * 12 11 10 15 15 N 1.30897 * 120.00177 * 14.89968 * 14 12 11 16 16 Si 1.86808 * 119.99881 * 194.89929 * 14 12 11 17 17 H 1.48500 * 109.46714 * 59.99793 * 16 14 12 18 18 H 1.48495 * 109.46917 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47154 * 300.00074 * 16 14 12 20 20 C 1.39817 * 109.39504 * 359.81482 * 6 5 4 21 21 H 1.08995 * 109.47281 * 299.99987 * 1 2 3 22 22 H 1.09001 * 109.47101 * 60.00248 * 1 2 3 23 23 H 1.08996 * 109.46766 * 180.02562 * 1 2 3 24 24 H 1.08004 * 124.67195 * 0.02562 * 4 3 2 25 25 H 1.07996 * 119.29278 * 359.95661 * 7 6 5 26 26 H 0.96705 * 113.99595 * 90.00320 * 9 8 7 27 27 H 1.07995 * 119.95461 * 179.97438 * 10 8 7 28 28 H 0.97003 * 119.99974 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2128 0.0000 4 6 1.3641 2.3564 -0.0058 5 16 2.4565 3.7298 0.0000 6 6 3.8641 2.6722 0.0001 7 6 5.2260 2.9758 0.0006 8 6 6.1889 1.9778 0.0011 9 8 7.5050 2.3172 0.0020 10 6 5.8304 0.6445 0.0006 11 6 4.4759 0.2808 0.0002 12 6 4.1044 -1.0749 0.0003 13 1 3.1544 -1.3745 -0.4171 14 6 4.9649 -2.0359 0.5411 15 7 5.9655 -1.6657 1.2995 16 14 4.6860 -3.8476 0.1811 17 1 4.7649 -4.0790 -1.2836 18 1 5.7277 -4.6544 0.8661 19 1 3.3442 -4.2494 0.6742 20 6 3.4430 1.3389 0.0001 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.2865 2.4286 -0.0104 25 1 5.5368 4.0101 0.0002 26 1 7.8852 2.4153 0.8858 27 1 6.5939 -0.1192 0.0006 28 1 6.5625 -2.3322 1.6742 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396381913.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:19 Heat of formation + Delta-G solvation = -45.749165 kcal Electronic energy + Delta-G solvation = -15829.487035 eV Core-core repulsion = 13130.161213 eV Total energy + Delta-G solvation = -2699.325822 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.09156 -37.83297 -35.81364 -34.22697 -31.91919 -29.85106 -27.50540 -26.93196 -25.32811 -22.07914 -21.28136 -19.54268 -18.25416 -16.73811 -16.45842 -15.95711 -15.18576 -15.04531 -14.87201 -14.17255 -13.75183 -13.35855 -12.89869 -12.37272 -11.98908 -11.71791 -11.51492 -11.38194 -11.25635 -11.04471 -10.66856 -10.49319 -10.17750 -10.11195 -9.61781 -9.28192 -9.17058 -8.03245 -7.28143 -7.05781 -6.57540 -4.57831 1.82293 2.58796 2.61629 2.92899 2.95886 3.02699 3.05582 3.48183 3.72102 4.14654 4.28252 5.19621 5.44071 5.53005 5.59576 5.75322 5.87988 6.28982 6.34321 6.67610 6.78424 6.84647 6.90765 7.09937 7.40082 7.56518 7.71197 7.85887 8.13789 8.22863 8.50735 8.52952 8.79425 9.80871 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.017729 B = 0.011064 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.935086 B = 2530.102164 C = 4026.136208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.292 6.292 3 C 0.192 3.808 4 C -0.394 4.394 5 S 0.018 5.982 6 C -0.037 4.037 7 C -0.260 4.260 8 C 0.158 3.842 9 O -0.512 6.512 10 C -0.213 4.213 11 C 0.169 3.831 12 C -0.405 4.405 13 H 0.100 0.900 14 C 0.069 3.931 15 N -0.766 5.766 16 Si 0.921 3.079 17 H -0.259 1.259 18 H -0.275 1.275 19 H -0.260 1.260 20 C -0.212 4.212 21 H 0.047 0.953 22 H 0.046 0.954 23 H 0.090 0.910 24 H 0.147 0.853 25 H 0.100 0.900 26 H 0.378 0.622 27 H 0.132 0.868 28 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.067 0.415 0.159 4.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.205 6.205 3 C 0.137 3.863 4 C -0.527 4.527 5 S 0.276 5.724 6 C -0.152 4.152 7 C -0.287 4.287 8 C 0.111 3.889 9 O -0.321 6.321 10 C -0.235 4.235 11 C 0.163 3.837 12 C -0.432 4.432 13 H 0.118 0.882 14 C -0.153 4.153 15 N -0.388 5.388 16 Si 0.744 3.256 17 H -0.183 1.183 18 H -0.200 1.200 19 H -0.184 1.184 20 C -0.218 4.218 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.108 0.892 24 H 0.165 0.835 25 H 0.119 0.881 26 H 0.232 0.768 27 H 0.149 0.851 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.198 1.599 -0.294 4.502 hybrid contribution -0.164 -1.955 0.524 2.031 sum -4.361 -0.356 0.230 4.382 Atomic orbital electron populations 1.22910 0.80555 1.02718 1.00565 1.86267 1.19284 1.26448 1.88512 1.17563 0.90853 0.83501 0.94348 1.24099 1.01662 0.94798 1.32186 1.83261 0.96216 1.09413 1.83545 1.21732 0.96096 0.94417 1.02906 1.19617 0.89493 0.97602 1.21955 1.18057 0.81397 0.91823 0.97602 1.84696 1.22733 1.92024 1.32675 1.21267 0.96535 0.93895 1.11770 1.18205 0.89114 0.91040 0.85365 1.19855 1.03389 0.90748 1.29212 0.88167 1.26180 0.93544 1.02941 0.92657 1.69842 1.11604 1.37710 1.19682 0.86126 0.79491 0.79718 0.80245 1.18297 1.19956 1.18424 1.18397 0.89807 0.92914 1.20725 0.93486 0.93511 0.89155 0.83538 0.88146 0.76756 0.85078 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.91 101.05 1.00 1.44 15 2 O -0.29 -6.27 8.36 -20.10 -0.17 -6.44 15 3 C 0.19 4.45 6.64 -40.61 -0.27 4.19 15 4 C -0.39 -8.17 9.99 28.98 0.29 -7.88 15 5 S 0.02 0.38 23.29 -107.50 -2.50 -2.13 15 6 C -0.04 -0.88 6.48 -38.51 -0.25 -1.13 15 7 C -0.26 -6.11 9.94 -38.93 -0.39 -6.50 15 8 C 0.16 3.75 6.66 -39.48 -0.26 3.48 15 9 O -0.51 -10.58 13.47 -19.46 -0.26 -10.84 15 10 C -0.21 -5.44 8.56 -38.89 -0.33 -5.77 15 11 C 0.17 4.45 5.74 -104.32 -0.60 3.85 15 12 C -0.41 -10.31 8.51 -38.09 -0.32 -10.64 15 13 H 0.10 2.51 6.28 -52.49 -0.33 2.18 15 14 C 0.07 1.61 5.18 -17.34 -0.09 1.52 15 15 N -0.77 -18.32 10.91 55.54 0.61 -17.71 15 16 Si 0.92 17.50 29.59 -169.99 -5.03 12.47 15 17 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 18 H -0.27 -5.02 7.11 56.52 0.40 -4.62 15 19 H -0.26 -4.90 7.11 56.52 0.40 -4.49 15 20 C -0.21 -5.41 6.03 -104.64 -0.63 -6.04 15 21 H 0.05 0.67 7.83 -51.93 -0.41 0.26 15 22 H 0.05 0.65 7.81 -51.93 -0.41 0.25 15 23 H 0.09 1.15 8.14 -51.93 -0.42 0.72 15 24 H 0.15 2.60 6.90 -52.48 -0.36 2.24 15 25 H 0.10 2.17 8.06 -52.49 -0.42 1.74 15 26 H 0.38 5.93 9.06 45.56 0.41 6.34 15 27 H 0.13 3.40 6.17 -52.49 -0.32 3.08 15 28 H 0.29 6.20 8.30 -40.82 -0.34 5.87 15 LS Contribution 259.11 15.07 3.90 3.90 Total: -1.00 -28.45 259.11 -6.70 -35.15 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -1.39 Total: 9.08 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: -1.85 Total: -23.48 kcal Atomic # 7 Polarization: -18.32 SS G_CDS: 0.61 Total: -17.71 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.43 Total: -17.28 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Atomic # 16 Polarization: 0.38 SS G_CDS: -2.50 Total: -2.13 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.45 -6.70 -35.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396381913.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.596 kcal (2) G-P(sol) polarization free energy of solvation -28.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds