Wall clock time and date at job start Mon Mar 30 2020 05:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36368 * 116.99965 * 2 1 4 4 C 1.32506 * 122.64777 * 270.00717 * 3 2 1 5 5 O 1.35910 * 124.26780 * 0.02562 * 4 3 2 6 6 S 1.75246 * 111.46299 * 179.97438 * 4 3 2 7 7 C 1.75994 * 92.33658 * 359.97438 * 6 4 3 8 8 C 1.40380 * 130.18489 * 179.97438 * 7 6 4 9 9 C 1.35743 * 120.85236 * 179.78505 * 8 7 6 10 10 C 1.41132 * 120.11843 * 0.49782 * 9 8 7 11 11 C 1.41239 * 120.07333 * 179.77296 * 10 9 8 12 12 H 1.08001 * 120.00167 * 154.95256 * 11 10 9 13 13 C 1.39836 * 120.00123 * 334.67516 * 11 10 9 14 14 N 1.30910 * 119.99768 * 342.33731 * 13 11 10 15 15 Si 1.86795 * 120.00380 * 162.33504 * 13 11 10 16 16 H 1.48498 * 109.47253 * 89.99985 * 15 13 11 17 17 H 1.48503 * 109.47213 * 210.00489 * 15 13 11 18 18 H 1.48504 * 109.47259 * 330.00107 * 15 13 11 19 19 C 1.39986 * 119.85692 * 359.49295 * 10 9 8 20 20 C 1.40248 * 109.67391 * 359.97438 * 7 6 4 21 21 H 1.09000 * 109.46946 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46895 * 299.99555 * 1 2 3 23 23 H 1.09000 * 109.47306 * 59.99532 * 1 2 3 24 24 H 0.96698 * 114.00007 * 179.97438 * 5 4 3 25 25 H 1.08001 * 119.56953 * 0.02861 * 8 7 6 26 26 H 1.08006 * 119.94180 * 180.26293 * 9 8 7 27 27 H 0.97006 * 119.99946 * 179.97438 * 14 13 11 28 28 H 1.07995 * 120.00600 * 180.23453 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0481 1.2151 0.0000 4 6 2.3725 1.8520 -1.1157 5 8 2.1300 1.3775 -2.3660 6 16 3.1524 3.3842 -0.7758 7 6 3.0287 3.1434 0.9632 8 6 3.4462 3.9636 2.0232 9 6 3.2494 3.5885 3.3129 10 6 2.6275 2.3557 3.6048 11 6 2.4276 1.9642 4.9471 12 1 1.6356 1.2734 5.1958 13 6 3.2588 2.4665 5.9532 14 7 4.4100 3.0066 5.6421 15 14 2.7265 2.3669 7.7409 16 1 3.2032 1.0894 8.3289 17 1 3.3082 3.5065 8.4948 18 1 1.2448 2.4258 7.8203 19 6 2.2041 1.5243 2.5612 20 6 2.4030 1.9161 1.2266 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 2.4285 1.9644 -3.0742 25 1 3.9266 4.9070 1.8098 26 1 3.5727 4.2330 4.1170 27 1 4.9865 3.3554 6.3400 28 1 1.7245 0.5822 2.7819 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396381946.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:04 Heat of formation + Delta-G solvation = -62.301314 kcal Electronic energy + Delta-G solvation = -15507.210083 eV Core-core repulsion = 12807.166506 eV Total energy + Delta-G solvation = -2700.043577 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.69526 -39.14030 -38.27865 -35.98036 -33.80401 -31.80517 -29.56599 -27.99689 -27.06698 -23.84800 -22.99197 -21.60133 -20.27889 -19.00862 -17.99951 -17.68327 -17.08443 -16.70827 -16.49849 -15.35213 -15.25797 -15.01537 -14.91356 -14.29936 -14.01253 -13.77104 -13.37201 -13.02616 -12.83924 -12.62810 -12.44370 -12.03301 -11.89166 -11.42113 -11.35901 -10.84003 -10.76442 -10.13842 -9.00015 -8.78512 -8.42066 -6.40017 0.06329 0.34296 0.72963 0.98630 1.38939 1.41530 1.49237 1.55763 2.19371 2.57561 2.75871 3.01775 3.57389 4.21446 4.31074 4.43503 4.48562 4.68353 4.74264 4.86985 4.91473 5.08398 5.21151 5.48101 5.58642 5.71623 5.94685 6.15115 6.31990 6.50596 6.57091 6.81706 6.84955 8.24339 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.033818 B = 0.006540 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.758626 B = 4280.510492 C = 4989.285405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.332 6.332 3 C -0.003 4.003 4 C 0.034 3.966 5 O -0.435 6.435 6 S 0.089 5.911 7 C -0.258 4.258 8 C -0.068 4.068 9 C -0.147 4.147 10 C 0.095 3.905 11 C -0.488 4.488 12 H 0.079 0.921 13 C 0.040 3.960 14 N -0.816 5.816 15 Si 0.986 3.014 16 H -0.263 1.263 17 H -0.262 1.262 18 H -0.258 1.258 19 C -0.231 4.231 20 C -0.038 4.038 21 H 0.115 0.885 22 H 0.035 0.965 23 H 0.050 0.950 24 H 0.418 0.582 25 H 0.124 0.876 26 H 0.120 0.880 27 H 0.294 0.706 28 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.351 1.632 -7.962 8.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.249 6.249 3 C -0.060 4.060 4 C -0.128 4.128 5 O -0.242 6.242 6 S 0.343 5.657 7 C -0.372 4.372 8 C -0.090 4.090 9 C -0.168 4.168 10 C 0.091 3.909 11 C -0.516 4.516 12 H 0.097 0.903 13 C -0.177 4.177 14 N -0.441 5.441 15 Si 0.806 3.194 16 H -0.188 1.188 17 H -0.186 1.186 18 H -0.182 1.182 19 C -0.254 4.254 20 C -0.044 4.044 21 H 0.133 0.867 22 H 0.054 0.946 23 H 0.069 0.931 24 H 0.274 0.726 25 H 0.142 0.858 26 H 0.138 0.862 27 H 0.105 0.895 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.745 2.147 -8.534 9.218 hybrid contribution -0.527 -0.716 1.319 1.591 sum -3.273 1.430 -7.215 8.051 Atomic orbital electron populations 1.23130 0.78743 1.04158 1.00297 1.86097 1.20977 1.23733 1.94084 1.18005 1.07771 0.90507 0.89670 1.22543 1.04370 0.97957 0.87922 1.84861 1.79866 1.47896 1.11619 1.83118 1.67343 1.15415 0.99830 1.21744 1.17729 1.01798 0.95969 1.20018 0.99665 0.98281 0.91043 1.21052 1.03501 0.97055 0.95167 1.17775 0.89068 0.90709 0.93315 1.19824 1.14692 1.25247 0.91869 0.90319 1.26786 0.93036 0.91692 1.06194 1.69869 1.07673 1.28450 1.38108 0.85144 0.79859 0.79247 0.75160 1.18779 1.18559 1.18213 1.20707 1.14114 1.00367 0.90170 1.18837 0.99250 0.93391 0.92909 0.86684 0.94640 0.93127 0.72617 0.85845 0.86191 0.89509 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.02 11.14 113.37 1.26 2.28 15 2 O -0.33 -13.91 10.47 -88.70 -0.93 -14.84 15 3 C 0.00 -0.14 5.95 23.05 0.14 -0.01 15 4 C 0.03 1.21 7.50 66.68 0.50 1.71 15 5 O -0.44 -12.26 13.57 -83.46 -1.13 -13.40 15 6 S 0.09 2.99 23.16 -56.49 -1.31 1.68 15 7 C -0.26 -11.59 6.50 23.28 0.15 -11.44 15 8 C -0.07 -3.11 9.98 22.21 0.22 -2.89 15 9 C -0.15 -7.52 8.60 22.40 0.19 -7.32 15 10 C 0.09 5.15 5.55 -21.41 -0.12 5.03 15 11 C -0.49 -25.90 9.02 23.39 0.21 -25.69 15 12 H 0.08 4.06 7.91 -2.91 -0.02 4.04 15 13 C 0.04 1.92 5.13 85.22 0.44 2.35 15 14 N -0.82 -40.78 10.99 21.81 0.24 -40.54 15 15 Si 0.99 36.59 29.59 68.60 2.03 38.62 15 16 H -0.26 -9.50 7.11 99.48 0.71 -8.80 15 17 H -0.26 -9.08 7.11 99.48 0.71 -8.37 15 18 H -0.26 -9.47 7.11 99.48 0.71 -8.76 15 19 C -0.23 -12.22 9.83 23.25 0.23 -11.99 15 20 C -0.04 -1.84 6.03 -20.32 -0.12 -1.96 15 21 H 0.11 2.92 8.14 -2.39 -0.02 2.90 15 22 H 0.03 1.19 8.14 -2.38 -0.02 1.17 15 23 H 0.05 1.48 8.14 -2.39 -0.02 1.46 15 24 H 0.42 6.55 9.01 -74.06 -0.67 5.88 15 25 H 0.12 4.83 8.06 -2.91 -0.02 4.81 15 26 H 0.12 6.19 6.19 -2.91 -0.02 6.17 15 27 H 0.29 13.10 8.30 -92.70 -0.77 12.33 15 28 H 0.09 4.76 8.06 -2.91 -0.02 4.74 15 Total: -1.00 -63.38 266.28 2.54 -60.85 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.54 Total: 17.56 kcal Atomic # 6 Polarization: -53.03 SS G_CDS: 3.10 Total: -49.93 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.24 Total: -40.54 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -2.06 Total: -28.24 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 2.03 Total: 38.62 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -1.31 Total: 1.68 kcal Total: -63.38 2.54 -60.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396381946.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.456 kcal (2) G-P(sol) polarization free energy of solvation -63.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds