Wall clock time and date at job start Mon Mar 30 2020 05:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35837 * 117.00333 * 2 1 4 4 C 1.37971 * 119.83475 * 0.02562 * 3 2 1 5 5 C 1.38507 * 120.17008 * 179.97438 * 4 3 2 6 6 C 1.37711 * 120.17296 * 0.02562 * 5 4 3 7 7 C 1.39836 * 120.60133 * 359.92896 * 6 5 4 8 8 S 1.75893 * 129.68613 * 180.02562 * 7 6 5 9 9 C 1.75180 * 92.74996 * 180.02562 * 8 7 6 10 10 O 1.35267 * 124.57644 * 180.02562 * 9 8 7 11 11 C 1.37471 * 110.84253 * 359.73546 * 9 8 7 12 12 C 1.40687 * 123.23924 * 180.31036 * 11 9 8 13 13 H 1.07999 * 120.00287 * 141.20107 * 12 11 9 14 14 C 1.39515 * 119.99523 * 321.20655 * 12 11 9 15 15 N 1.31279 * 119.99993 * 158.58233 * 14 12 11 16 16 Si 1.86798 * 119.99953 * 338.57020 * 14 12 11 17 17 H 1.48500 * 109.47318 * 94.74944 * 16 14 12 18 18 H 1.48501 * 109.47078 * 214.75035 * 16 14 12 19 19 H 1.48499 * 109.47478 * 334.74769 * 16 14 12 20 20 C 1.39230 * 119.68759 * 0.06793 * 7 6 5 21 21 H 1.09002 * 109.46711 * 60.00408 * 1 2 3 22 22 H 1.09000 * 109.47243 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47384 * 300.00132 * 1 2 3 24 24 H 1.08002 * 119.91378 * 0.02562 * 4 3 2 25 25 H 1.08004 * 119.90941 * 180.02562 * 5 4 3 26 26 H 1.08001 * 119.70198 * 179.97438 * 6 5 4 27 27 H 0.96701 * 113.99729 * 359.25488 * 10 9 8 28 28 H 0.97000 * 119.99953 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2103 0.0000 4 6 1.2911 2.3653 0.0005 5 6 1.9127 3.6030 0.0011 6 6 3.2872 3.6872 0.0005 7 6 4.0713 2.5294 0.0010 8 16 5.8219 2.3583 0.0011 9 6 5.7354 0.6087 0.0009 10 8 6.8099 -0.2130 0.0013 11 6 4.4281 0.1836 0.0067 12 6 4.0587 -1.1739 0.0143 13 1 3.2152 -1.5007 0.6043 14 6 4.7820 -2.0979 -0.7404 15 7 4.7365 -3.3739 -0.4352 16 14 5.8150 -1.5193 -2.1853 17 1 7.2163 -1.3112 -1.7401 18 1 5.7837 -2.5454 -3.2584 19 1 5.2661 -0.2416 -2.7061 20 6 3.4565 1.2802 0.0005 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.2128 2.3041 0.0014 25 1 1.3178 4.5044 0.0019 26 1 3.7640 4.6563 0.0006 27 1 7.6589 0.2498 -0.0097 28 1 5.2392 -4.0163 -0.9601 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396382171.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:16 Heat of formation + Delta-G solvation = -54.070484 kcal Electronic energy + Delta-G solvation = -16068.892613 eV Core-core repulsion = 13369.205952 eV Total energy + Delta-G solvation = -2699.686661 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.02828 -39.03041 -38.17157 -35.81346 -34.21557 -30.98119 -30.11354 -28.30366 -26.87262 -24.01859 -22.93467 -21.32283 -20.02850 -19.03741 -18.65592 -17.00538 -16.75529 -16.53608 -16.49013 -16.27443 -15.28766 -14.96186 -14.83839 -14.49542 -14.11541 -13.81905 -13.42858 -13.04951 -12.81897 -12.56588 -12.13397 -12.06837 -11.91690 -11.69701 -11.38512 -11.00595 -10.80919 -9.72581 -8.92720 -8.69786 -8.29758 -6.20568 0.07173 0.41605 0.75186 1.11050 1.25494 1.36508 1.47931 1.74298 2.32205 2.60182 2.77052 3.20207 3.39427 4.04745 4.20330 4.29705 4.35525 4.44475 4.57973 4.62836 4.73985 5.03607 5.17159 5.38801 5.51615 5.58484 5.61752 5.86081 6.39374 6.57898 6.71331 6.89868 7.09019 8.39084 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.020722 B = 0.012201 C = 0.008367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.875969 B = 2294.254970 C = 3345.625631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.328 6.328 3 C 0.146 3.854 4 C -0.221 4.221 5 C -0.063 4.063 6 C -0.134 4.134 7 C -0.113 4.113 8 S 0.039 5.961 9 C -0.163 4.163 10 O -0.445 6.445 11 C 0.022 3.978 12 C -0.444 4.444 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.871 5.871 16 Si 0.972 3.028 17 H -0.233 1.233 18 H -0.294 1.294 19 H -0.281 1.281 20 C -0.118 4.118 21 H 0.071 0.929 22 H 0.102 0.898 23 H 0.071 0.929 24 H 0.161 0.839 25 H 0.175 0.825 26 H 0.151 0.849 27 H 0.388 0.612 28 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.763 13.470 -1.186 14.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.241 6.241 3 C 0.099 3.901 4 C -0.242 4.242 5 C -0.084 4.084 6 C -0.158 4.158 7 C -0.228 4.228 8 S 0.297 5.703 9 C -0.321 4.321 10 O -0.252 6.252 11 C 0.012 3.988 12 C -0.478 4.478 13 H 0.073 0.927 14 C -0.154 4.154 15 N -0.501 5.501 16 Si 0.799 3.201 17 H -0.158 1.158 18 H -0.222 1.222 19 H -0.206 1.206 20 C -0.127 4.127 21 H 0.090 0.910 22 H 0.120 0.880 23 H 0.090 0.910 24 H 0.179 0.821 25 H 0.192 0.808 26 H 0.168 0.832 27 H 0.240 0.760 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.800 13.450 -1.176 14.026 hybrid contribution -0.358 -1.196 -0.414 1.316 sum -4.158 12.254 -1.590 13.037 Atomic orbital electron populations 1.23343 0.77242 1.04813 1.02512 1.86349 1.22820 1.27257 1.87670 1.19216 0.89964 0.85626 0.95318 1.21317 1.00986 0.91209 1.10720 1.21150 0.93272 0.97826 0.96118 1.20726 0.93871 0.95688 1.05467 1.22290 0.96491 0.96398 1.07624 1.82745 1.01889 1.01555 1.84153 1.22392 0.90168 0.90497 1.29019 1.84812 1.14679 1.32501 1.93215 1.17250 0.88128 0.93452 0.99945 1.18446 1.13049 0.90234 1.26023 0.92674 1.26521 0.94971 0.94116 0.99815 1.69971 1.38439 1.03927 1.37774 0.85366 0.81321 0.77008 0.76447 1.15751 1.22216 1.20646 1.18874 0.92110 0.92876 1.08836 0.91033 0.87997 0.91002 0.82123 0.80804 0.83166 0.75995 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.80 113.37 1.11 1.54 15 2 O -0.33 -14.30 8.61 -91.72 -0.79 -15.09 15 3 C 0.15 6.15 6.75 22.95 0.15 6.31 15 4 C -0.22 -6.68 9.01 22.27 0.20 -6.48 15 5 C -0.06 -1.64 10.03 22.21 0.22 -1.42 15 6 C -0.13 -4.08 10.06 22.53 0.23 -3.85 15 7 C -0.11 -4.57 6.41 22.90 0.15 -4.42 15 8 S 0.04 1.54 23.13 -56.49 -1.31 0.23 15 9 C -0.16 -8.03 6.11 67.64 0.41 -7.62 15 10 O -0.45 -20.98 8.86 -85.51 -0.76 -21.74 15 11 C 0.02 1.22 4.88 -20.70 -0.10 1.12 15 12 C -0.44 -27.44 8.68 23.18 0.20 -27.24 15 13 H 0.06 3.70 7.19 -2.91 -0.02 3.68 15 14 C 0.06 3.39 5.11 85.08 0.43 3.82 15 15 N -0.87 -53.20 13.95 21.77 0.30 -52.90 15 16 Si 0.97 49.17 24.64 68.60 1.69 50.86 15 17 H -0.23 -10.83 5.96 99.48 0.59 -10.24 15 18 H -0.29 -14.17 7.11 99.48 0.71 -13.46 15 19 H -0.28 -14.73 7.11 99.48 0.71 -14.02 15 20 C -0.12 -5.70 6.01 -20.14 -0.12 -5.82 15 21 H 0.07 1.65 7.65 -2.39 -0.02 1.63 15 22 H 0.10 2.64 8.14 -2.39 -0.02 2.62 15 23 H 0.07 1.65 7.64 -2.39 -0.02 1.63 15 24 H 0.16 3.58 6.24 -2.91 -0.02 3.56 15 25 H 0.17 2.73 8.06 -2.91 -0.02 2.70 15 26 H 0.15 3.52 8.06 -2.91 -0.02 3.50 15 27 H 0.39 13.59 9.00 -74.06 -0.67 12.92 15 28 H 0.28 15.77 8.31 -92.71 -0.77 15.00 15 Total: -1.00 -75.61 252.48 2.46 -73.15 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 0.43 Total: 9.52 kcal Atomic # 6 Polarization: -46.93 SS G_CDS: 2.89 Total: -44.04 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.30 Total: -52.90 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -1.55 Total: -36.82 kcal Atomic # 14 Polarization: 49.17 SS G_CDS: 1.69 Total: 50.86 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -1.31 Total: 0.23 kcal Total: -75.61 2.46 -73.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396382171.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.083 kcal (2) G-P(sol) polarization free energy of solvation -75.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds