Wall clock time and date at job start Mon Mar 30 2020 05:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35610 * 117.00151 * 2 1 4 4 C 1.38583 * 119.61982 * 359.97242 * 3 2 1 5 5 C 1.37608 * 120.64380 * 180.02562 * 4 3 2 6 6 C 1.40574 * 119.94375 * 0.02562 * 5 4 3 7 7 C 1.40834 * 120.02385 * 179.97438 * 6 5 4 8 8 H 1.08002 * 120.00115 * 154.35352 * 7 6 5 9 9 C 1.39769 * 120.00342 * 334.34962 * 7 6 5 10 10 N 1.30994 * 120.00014 * 342.49379 * 9 7 6 11 11 Si 1.86801 * 120.00339 * 162.48844 * 9 7 6 12 12 H 1.48498 * 109.46811 * 60.00414 * 11 9 7 13 13 H 1.48498 * 109.47367 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47098 * 300.00438 * 11 9 7 15 15 C 1.42172 * 119.94892 * 0.02562 * 6 5 4 16 16 S 1.75912 * 130.39675 * 179.97438 * 15 6 5 17 17 C 1.75297 * 92.21237 * 180.02562 * 16 15 6 18 18 O 1.35770 * 124.39220 * 180.02562 * 17 16 15 19 19 C 1.32576 * 111.21110 * 359.97438 * 17 16 15 20 20 C 1.39160 * 119.72742 * 359.97274 * 15 6 5 21 21 H 1.08998 * 109.46908 * 60.00400 * 1 2 3 22 22 H 1.08999 * 109.47517 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47060 * 300.00489 * 1 2 3 24 24 H 1.08006 * 119.67499 * 359.97438 * 4 3 2 25 25 H 1.08003 * 120.02774 * 180.02562 * 5 4 3 26 26 H 0.96993 * 120.00156 * 180.02562 * 10 9 7 27 27 H 0.96695 * 113.99774 * 269.99279 * 18 17 16 28 28 H 1.07993 * 122.63234 * 180.27452 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2822 2.3655 -0.0006 5 6 1.8849 3.6026 -0.0011 6 6 3.2873 3.6998 -0.0016 7 6 3.9060 4.9650 -0.0027 8 1 4.9008 5.0800 0.4017 9 6 3.2326 6.0718 -0.5273 10 7 2.1999 5.8977 -1.3142 11 14 3.8051 7.7993 -0.1061 12 1 5.2060 7.9817 -0.5637 13 1 2.9299 8.7897 -0.7830 14 1 3.7344 7.9997 1.3636 15 6 4.0806 2.5200 -0.0021 16 16 5.8285 2.3214 -0.0034 17 6 5.6980 0.5733 -0.0040 18 8 6.7581 -0.2749 -0.0046 19 6 4.4297 0.1870 -0.0027 20 6 3.4627 1.2730 -0.0016 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.2044 2.2957 -0.0014 25 1 1.2811 4.4980 -0.0012 26 1 1.7329 6.6658 -1.6785 27 1 7.0649 -0.5204 -0.8881 28 1 4.1377 -0.8527 0.0016 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396382186.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:18 Heat of formation + Delta-G solvation = -43.216472 kcal Electronic energy + Delta-G solvation = -15564.481155 eV Core-core repulsion = 12865.265159 eV Total energy + Delta-G solvation = -2699.215996 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.00796 -37.67033 -36.53245 -34.25080 -32.42758 -29.53782 -27.92306 -26.59826 -24.79879 -22.43958 -21.00670 -20.08877 -18.19318 -17.22607 -16.86063 -15.64855 -15.02201 -14.94175 -14.86864 -14.59804 -14.10564 -13.42665 -12.62433 -12.30710 -12.19111 -12.09673 -11.78969 -11.26103 -11.13994 -10.90011 -10.73540 -10.62345 -10.07098 -9.78353 -9.69814 -9.45367 -9.07664 -8.08632 -7.34856 -6.92922 -6.63603 -4.36886 1.73271 2.35456 2.53868 2.97863 3.01399 3.05008 3.08217 3.34250 3.85064 4.27429 4.45314 4.69481 5.36292 5.60788 5.67152 5.81146 5.91673 6.05363 6.28483 6.50683 6.62426 6.77076 7.00807 7.10658 7.16403 7.59976 7.74118 7.76688 7.84689 8.23074 8.45852 8.66819 8.73462 10.04737 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.019074 B = 0.009306 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.631528 B = 3007.944089 C = 4386.060538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.328 6.328 3 C 0.030 3.970 4 C -0.165 4.165 5 C -0.130 4.130 6 C 0.125 3.875 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.077 3.923 10 N -0.790 5.790 11 Si 0.911 3.089 12 H -0.263 1.263 13 H -0.277 1.277 14 H -0.262 1.262 15 C -0.177 4.177 16 S 0.041 5.959 17 C -0.007 4.007 18 O -0.463 6.463 19 C -0.125 4.125 20 C -0.064 4.064 21 H 0.045 0.955 22 H 0.083 0.917 23 H 0.044 0.956 24 H 0.105 0.895 25 H 0.130 0.870 26 H 0.284 0.716 27 H 0.381 0.619 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.238 -4.681 0.049 4.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.243 6.243 3 C -0.017 4.017 4 C -0.185 4.185 5 C -0.154 4.154 6 C 0.119 3.881 7 C -0.483 4.483 8 H 0.099 0.901 9 C -0.141 4.141 10 N -0.415 5.415 11 Si 0.735 3.265 12 H -0.188 1.188 13 H -0.202 1.202 14 H -0.186 1.186 15 C -0.293 4.293 16 S 0.302 5.698 17 C -0.166 4.166 18 O -0.271 6.271 19 C -0.159 4.159 20 C -0.070 4.070 21 H 0.064 0.936 22 H 0.102 0.898 23 H 0.063 0.937 24 H 0.123 0.877 25 H 0.147 0.853 26 H 0.095 0.905 27 H 0.235 0.765 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.929 -3.767 0.512 3.913 hybrid contribution -1.206 -0.115 -0.482 1.304 sum -0.277 -3.882 0.031 3.892 Atomic orbital electron populations 1.22758 0.80586 1.01943 1.00600 1.85800 1.19394 1.28403 1.90753 1.18287 0.89163 0.83353 1.10888 1.20689 0.97838 0.92704 1.07254 1.20993 0.93963 0.95670 1.04749 1.16923 0.90985 0.89937 0.90287 1.19356 1.02387 0.91825 1.34780 0.90118 1.25870 0.94068 1.01744 0.92437 1.69860 1.16859 1.33599 1.21229 0.86306 0.79756 0.80392 0.80064 1.18794 1.20197 1.18628 1.22195 0.93554 0.96100 1.17436 1.83766 1.05312 0.99382 1.81368 1.22077 0.88791 0.93173 1.12570 1.84821 1.46533 1.62805 1.32949 1.21278 0.91201 0.99615 1.03806 1.17724 0.90097 0.91257 1.07935 0.93641 0.89846 0.93714 0.87700 0.85267 0.90540 0.76520 0.84835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 9.79 101.05 0.99 1.55 15 2 O -0.33 -6.67 10.38 -18.53 -0.19 -6.86 15 3 C 0.03 0.68 6.78 -38.03 -0.26 0.42 15 4 C -0.16 -3.73 8.96 -39.68 -0.36 -4.09 15 5 C -0.13 -3.25 8.65 -38.93 -0.34 -3.58 15 6 C 0.12 3.25 5.59 -106.53 -0.60 2.66 15 7 C -0.45 -11.68 8.80 -38.03 -0.33 -12.02 15 8 H 0.08 2.04 7.74 -52.49 -0.41 1.63 15 9 C 0.08 1.86 5.12 -17.34 -0.09 1.78 15 10 N -0.79 -19.48 10.99 55.54 0.61 -18.87 15 11 Si 0.91 18.10 29.59 -169.99 -5.03 13.07 15 12 H -0.26 -5.22 7.11 56.52 0.40 -4.82 15 13 H -0.28 -5.33 7.11 56.52 0.40 -4.93 15 14 H -0.26 -5.18 7.11 56.52 0.40 -4.77 15 15 C -0.18 -4.40 6.35 -37.73 -0.24 -4.64 15 16 S 0.04 0.90 22.81 -107.50 -2.45 -1.55 15 17 C -0.01 -0.15 7.48 28.83 0.22 0.07 15 18 O -0.46 -7.69 13.64 -19.02 -0.26 -7.95 15 19 C -0.13 -2.64 10.29 -38.63 -0.40 -3.04 15 20 C -0.06 -1.52 6.03 -105.27 -0.64 -2.15 15 21 H 0.05 0.67 7.63 -51.93 -0.40 0.27 15 22 H 0.08 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.04 0.64 7.63 -51.93 -0.40 0.25 15 24 H 0.11 2.06 6.19 -52.48 -0.32 1.73 15 25 H 0.13 3.25 6.19 -52.48 -0.33 2.92 15 26 H 0.28 6.35 8.30 -40.82 -0.34 6.01 15 27 H 0.38 4.28 9.06 45.56 0.41 4.70 15 28 H 0.13 2.56 8.06 -52.49 -0.42 2.14 15 LS Contribution 261.52 15.07 3.94 3.94 Total: -1.00 -28.73 261.52 -6.83 -35.56 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -1.42 Total: 5.70 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -2.04 Total: -23.05 kcal Atomic # 7 Polarization: -19.48 SS G_CDS: 0.61 Total: -18.87 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.45 Total: -14.80 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.45 Total: -1.55 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.73 -6.83 -35.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396382186.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.657 kcal (2) G-P(sol) polarization free energy of solvation -28.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds