Wall clock time and date at job start Mon Mar 30 2020 05:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35610 * 117.00151 * 2 1 4 4 C 1.38583 * 119.61982 * 359.97242 * 3 2 1 5 5 C 1.37608 * 120.64380 * 180.02562 * 4 3 2 6 6 C 1.40574 * 119.94375 * 0.02562 * 5 4 3 7 7 C 1.40834 * 120.02385 * 179.97438 * 6 5 4 8 8 H 1.08002 * 120.00115 * 154.35352 * 7 6 5 9 9 C 1.39769 * 120.00342 * 334.34962 * 7 6 5 10 10 N 1.30994 * 120.00014 * 342.49379 * 9 7 6 11 11 Si 1.86801 * 120.00339 * 162.48844 * 9 7 6 12 12 H 1.48498 * 109.46811 * 60.00414 * 11 9 7 13 13 H 1.48498 * 109.47367 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47098 * 300.00438 * 11 9 7 15 15 C 1.42172 * 119.94892 * 0.02562 * 6 5 4 16 16 S 1.75912 * 130.39675 * 179.97438 * 15 6 5 17 17 C 1.75297 * 92.21237 * 180.02562 * 16 15 6 18 18 O 1.35770 * 124.39220 * 180.02562 * 17 16 15 19 19 C 1.32576 * 111.21110 * 359.97438 * 17 16 15 20 20 C 1.39160 * 119.72742 * 359.97274 * 15 6 5 21 21 H 1.08998 * 109.46908 * 60.00400 * 1 2 3 22 22 H 1.08999 * 109.47517 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47060 * 300.00489 * 1 2 3 24 24 H 1.08006 * 119.67499 * 359.97438 * 4 3 2 25 25 H 1.08003 * 120.02774 * 180.02562 * 5 4 3 26 26 H 0.96993 * 120.00156 * 180.02562 * 10 9 7 27 27 H 0.96695 * 113.99774 * 269.99279 * 18 17 16 28 28 H 1.07993 * 122.63234 * 180.27452 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2822 2.3655 -0.0006 5 6 1.8849 3.6026 -0.0011 6 6 3.2873 3.6998 -0.0016 7 6 3.9060 4.9650 -0.0027 8 1 4.9008 5.0800 0.4017 9 6 3.2326 6.0718 -0.5273 10 7 2.1999 5.8977 -1.3142 11 14 3.8051 7.7993 -0.1061 12 1 5.2060 7.9817 -0.5637 13 1 2.9299 8.7897 -0.7830 14 1 3.7344 7.9997 1.3636 15 6 4.0806 2.5200 -0.0021 16 16 5.8285 2.3214 -0.0034 17 6 5.6980 0.5733 -0.0040 18 8 6.7581 -0.2749 -0.0046 19 6 4.4297 0.1870 -0.0027 20 6 3.4627 1.2730 -0.0016 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.2044 2.2957 -0.0014 25 1 1.2811 4.4980 -0.0012 26 1 1.7329 6.6658 -1.6785 27 1 7.0649 -0.5204 -0.8881 28 1 4.1377 -0.8527 0.0016 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396382186.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:18 Heat of formation + Delta-G solvation = -62.036416 kcal Electronic energy + Delta-G solvation = -15565.297249 eV Core-core repulsion = 12865.265159 eV Total energy + Delta-G solvation = -2700.032090 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.67267 -39.14432 -38.18013 -35.97324 -34.16000 -31.32862 -29.48786 -28.14952 -26.51783 -24.13100 -22.74165 -21.75510 -19.80377 -18.98784 -18.43215 -17.30984 -16.61947 -16.60778 -16.34683 -16.20195 -15.64493 -15.07897 -14.27563 -13.99812 -13.84545 -13.73183 -13.40049 -12.83700 -12.77729 -12.53665 -12.26479 -12.13454 -11.77794 -11.45775 -11.42398 -11.09262 -10.83651 -9.81002 -9.10607 -8.71974 -8.40239 -6.24263 0.05438 0.68714 0.74530 1.33977 1.35211 1.40295 1.50373 1.65290 2.20170 2.65708 2.79442 3.23911 3.50368 4.23132 4.33976 4.46031 4.49415 4.62564 4.76040 4.84245 4.94980 4.99111 5.20413 5.39041 5.40729 5.81694 5.88716 5.97627 6.39926 6.59267 6.69669 6.81684 6.96137 8.28575 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.019074 B = 0.009306 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.631528 B = 3007.944089 C = 4386.060538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.337 6.337 3 C 0.032 3.968 4 C -0.167 4.167 5 C -0.152 4.152 6 C 0.094 3.906 7 C -0.487 4.487 8 H 0.074 0.926 9 C 0.041 3.959 10 N -0.818 5.818 11 Si 0.979 3.021 12 H -0.262 1.262 13 H -0.264 1.264 14 H -0.260 1.260 15 C -0.206 4.206 16 S 0.039 5.961 17 C 0.018 3.982 18 O -0.457 6.457 19 C -0.140 4.140 20 C -0.083 4.083 21 H 0.050 0.950 22 H 0.120 0.880 23 H 0.052 0.948 24 H 0.132 0.868 25 H 0.119 0.881 26 H 0.292 0.708 27 H 0.410 0.590 28 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.121 -5.598 0.049 5.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.253 6.253 3 C -0.015 4.015 4 C -0.187 4.187 5 C -0.175 4.175 6 C 0.089 3.911 7 C -0.516 4.516 8 H 0.092 0.908 9 C -0.175 4.175 10 N -0.444 5.444 11 Si 0.800 3.200 12 H -0.186 1.186 13 H -0.188 1.188 14 H -0.185 1.185 15 C -0.322 4.322 16 S 0.299 5.701 17 C -0.141 4.141 18 O -0.269 6.269 19 C -0.173 4.173 20 C -0.090 4.090 21 H 0.069 0.931 22 H 0.138 0.862 23 H 0.071 0.929 24 H 0.150 0.850 25 H 0.137 0.863 26 H 0.102 0.898 27 H 0.269 0.731 28 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.039 -4.720 0.491 4.858 hybrid contribution -1.232 -0.043 -0.502 1.331 sum -0.192 -4.763 -0.011 4.767 Atomic orbital electron populations 1.23137 0.77832 1.04683 1.01203 1.85786 1.22183 1.26914 1.90398 1.18442 0.89347 0.84324 1.09407 1.20921 0.99308 0.91952 1.06535 1.20990 0.93840 0.96276 1.06410 1.17263 0.91866 0.90780 0.91214 1.19510 1.02684 0.92899 1.36505 0.90835 1.26638 0.94004 1.05118 0.91711 1.69895 1.17763 1.35029 1.21735 0.85288 0.79356 0.75653 0.79744 1.18604 1.18797 1.18467 1.22482 0.95299 0.96381 1.18003 1.83642 1.03557 1.01457 1.81441 1.21956 0.89328 0.92437 1.10385 1.84757 1.45212 1.61474 1.35469 1.21352 0.90960 0.99870 1.05095 1.18178 0.91230 0.91837 1.07735 0.93136 0.86151 0.92913 0.84988 0.86331 0.89765 0.73126 0.82809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 9.79 113.37 1.11 1.84 15 2 O -0.34 -13.08 10.38 -89.21 -0.93 -14.01 15 3 C 0.03 1.44 6.78 23.27 0.16 1.60 15 4 C -0.17 -7.58 8.96 22.20 0.20 -7.38 15 5 C -0.15 -7.79 8.65 22.69 0.20 -7.59 15 6 C 0.09 5.09 5.59 -21.10 -0.12 4.98 15 7 C -0.49 -25.89 8.80 23.28 0.20 -25.68 15 8 H 0.07 3.86 7.74 -2.91 -0.02 3.83 15 9 C 0.04 2.02 5.12 85.19 0.44 2.45 15 10 N -0.82 -41.19 10.99 21.80 0.24 -40.95 15 11 Si 0.98 37.39 29.59 68.60 2.03 39.42 15 12 H -0.26 -9.83 7.11 99.48 0.71 -9.12 15 13 H -0.26 -9.40 7.11 99.48 0.71 -8.70 15 14 H -0.26 -9.79 7.11 99.48 0.71 -9.08 15 15 C -0.21 -10.42 6.35 23.47 0.15 -10.27 15 16 S 0.04 1.70 22.81 -56.49 -1.29 0.41 15 17 C 0.02 0.70 7.48 66.67 0.50 1.20 15 18 O -0.46 -13.71 13.64 -90.97 -1.24 -14.95 15 19 C -0.14 -5.68 10.29 22.97 0.24 -5.44 15 20 C -0.08 -3.94 6.03 -20.29 -0.12 -4.06 15 21 H 0.05 1.36 7.63 -2.39 -0.02 1.34 15 22 H 0.12 2.44 8.14 -2.39 -0.02 2.42 15 23 H 0.05 1.39 7.63 -2.39 -0.02 1.37 15 24 H 0.13 5.06 6.19 -2.91 -0.02 5.04 15 25 H 0.12 6.20 6.19 -2.91 -0.02 6.18 15 26 H 0.29 13.20 8.30 -92.71 -0.77 12.43 15 27 H 0.41 7.65 9.06 -74.06 -0.67 6.98 15 28 H 0.15 5.52 8.06 -2.91 -0.02 5.50 15 Total: -1.00 -62.55 261.52 2.30 -60.25 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.54 Total: 18.20 kcal Atomic # 6 Polarization: -51.32 SS G_CDS: 2.95 Total: -48.37 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.24 Total: -40.95 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -2.17 Total: -28.96 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -1.29 Total: 0.41 kcal Total: -62.55 2.30 -60.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396382186.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.788 kcal (2) G-P(sol) polarization free energy of solvation -62.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds