Wall clock time and date at job start Mon Mar 30 2020 05:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35975 * 117.00114 * 2 1 4 4 C 1.39058 * 119.94303 * 0.02982 * 3 2 1 5 5 C 1.37602 * 120.06374 * 179.52329 * 4 3 2 6 6 C 1.39810 * 120.57373 * 0.71887 * 5 4 3 7 7 S 1.75892 * 129.64411 * 179.22210 * 6 5 4 8 8 C 1.75181 * 92.75824 * 180.02562 * 7 6 5 9 9 O 1.35257 * 124.57339 * 180.02562 * 8 7 6 10 10 C 1.37462 * 110.85109 * 0.02562 * 8 7 6 11 11 C 1.40670 * 123.23474 * 179.97438 * 10 8 7 12 12 H 1.07995 * 120.00220 * 318.44834 * 11 10 8 13 13 C 1.39566 * 119.99681 * 138.45406 * 11 10 8 14 14 N 1.31248 * 119.99747 * 156.57255 * 13 11 10 15 15 Si 1.86806 * 119.99956 * 336.29752 * 13 11 10 16 16 H 1.48500 * 109.46731 * 95.22843 * 15 13 11 17 17 H 1.48492 * 109.47218 * 215.22857 * 15 13 11 18 18 H 1.48505 * 109.46843 * 335.23189 * 15 13 11 19 19 C 1.39248 * 119.72627 * 359.48380 * 6 5 4 20 20 C 1.37819 * 119.94232 * 179.97438 * 3 2 1 21 21 H 1.08997 * 109.47161 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47328 * 299.99548 * 1 2 3 23 23 H 1.08999 * 109.47418 * 59.99671 * 1 2 3 24 24 H 1.07996 * 119.96794 * 359.97438 * 4 3 2 25 25 H 1.08001 * 119.71206 * 179.97438 * 5 4 3 26 26 H 0.96696 * 114.00128 * 271.48216 * 9 8 7 27 27 H 0.97007 * 120.00093 * 179.72157 * 14 13 11 28 28 H 1.07999 * 119.79757 * 0.02731 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2878 2.3770 0.0006 5 6 1.9099 3.6044 0.0105 6 6 3.3051 3.6945 0.0049 7 16 4.3376 5.1184 -0.0034 8 6 5.8037 4.1595 -0.0068 9 8 7.0556 4.6714 -0.0130 10 6 5.5100 2.8166 -0.0023 11 6 6.4947 1.8121 -0.0042 12 1 7.3698 1.9149 -0.6287 13 6 6.3406 0.6824 0.8008 14 7 6.9621 -0.4320 0.4935 15 14 5.2559 0.7588 2.3197 16 1 3.8974 0.2621 1.9833 17 1 5.8417 -0.0881 3.3895 18 1 5.1661 2.1634 2.7937 19 6 4.0721 2.5323 0.0001 20 6 3.4227 1.2822 0.0005 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 0.2094 2.3189 0.0007 25 1 1.3153 4.5059 0.0106 26 1 7.4076 4.8392 -0.8978 27 1 6.8582 -1.2161 1.0553 28 1 4.0068 0.3738 0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396382267.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:18 Heat of formation + Delta-G solvation = -58.776022 kcal Electronic energy + Delta-G solvation = -15923.239305 eV Core-core repulsion = 13223.348596 eV Total energy + Delta-G solvation = -2699.890709 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.14899 -39.26618 -38.06031 -35.82112 -34.04140 -31.80226 -29.96836 -28.07437 -27.45015 -23.55087 -23.40812 -21.56189 -20.03925 -18.84877 -18.21618 -17.78328 -16.90790 -16.74211 -16.58641 -16.39732 -15.25032 -14.90730 -14.75771 -14.60119 -14.28351 -13.91191 -13.63691 -13.32884 -12.72327 -12.61703 -12.32756 -12.17734 -12.02475 -11.58853 -11.40787 -10.93460 -10.72578 -10.02613 -9.07610 -8.92908 -8.46502 -6.43755 -0.20017 0.30097 0.83264 1.08715 1.24604 1.34869 1.38710 1.53831 2.08212 2.37131 2.58376 2.97132 3.69453 3.85348 4.06396 4.24251 4.38783 4.46966 4.50203 4.60990 4.75730 4.96630 5.06577 5.14078 5.20366 5.27339 5.61299 5.80875 6.10558 6.44037 6.48415 6.72125 7.00920 8.14914 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.018082 B = 0.012700 C = 0.008231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.132988 B = 2204.235047 C = 3401.062555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.340 6.340 3 C 0.111 3.889 4 C -0.174 4.174 5 C -0.050 4.050 6 C -0.164 4.164 7 S 0.025 5.975 8 C -0.160 4.160 9 O -0.449 6.449 10 C 0.038 3.962 11 C -0.467 4.467 12 H 0.060 0.940 13 C 0.068 3.932 14 N -0.842 5.842 15 Si 0.922 3.078 16 H -0.229 1.229 17 H -0.268 1.268 18 H -0.272 1.272 19 C -0.056 4.056 20 C -0.141 4.141 21 H 0.117 0.883 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.179 0.821 25 H 0.165 0.835 26 H 0.369 0.631 27 H 0.292 0.708 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.132 3.114 -0.206 15.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.255 6.255 3 C 0.064 3.936 4 C -0.194 4.194 5 C -0.073 4.073 6 C -0.279 4.279 7 S 0.283 5.717 8 C -0.319 4.319 9 O -0.256 6.256 10 C 0.026 3.974 11 C -0.500 4.500 12 H 0.078 0.922 13 C -0.148 4.148 14 N -0.469 5.469 15 Si 0.744 3.256 16 H -0.153 1.153 17 H -0.193 1.193 18 H -0.197 1.197 19 C -0.065 4.065 20 C -0.161 4.161 21 H 0.136 0.864 22 H 0.088 0.912 23 H 0.091 0.909 24 H 0.196 0.804 25 H 0.182 0.818 26 H 0.222 0.778 27 H 0.103 0.897 28 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.153 4.190 0.422 15.728 hybrid contribution 0.880 -1.579 -0.180 1.816 sum -14.273 2.611 0.241 14.512 Atomic orbital electron populations 1.23426 0.75937 1.05718 1.02791 1.86080 1.24016 1.26391 1.89014 1.18628 0.91007 0.85698 0.98285 1.21427 1.01487 0.90093 1.06397 1.20714 0.89880 0.99179 0.97523 1.22508 0.98284 0.95917 1.11205 1.82803 0.97310 1.07587 1.84008 1.22363 0.87185 0.91387 1.30989 1.84683 1.25748 1.82694 1.32509 1.18220 0.90795 0.92572 0.95780 1.18490 1.05838 1.01170 1.24505 0.92159 1.26392 0.95465 0.92856 1.00053 1.69928 1.38809 1.01410 1.36757 0.86288 0.81094 0.79591 0.78664 1.15293 1.19304 1.19653 1.19037 0.93034 0.92800 1.01623 1.20178 0.92794 0.96607 1.06568 0.86430 0.91167 0.90911 0.80377 0.81762 0.77754 0.89712 0.87288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 15 2 O -0.34 -10.99 10.49 -93.27 -0.98 -11.96 15 3 C 0.11 4.05 6.66 22.37 0.15 4.20 15 4 C -0.17 -4.91 9.02 22.32 0.20 -4.71 15 5 C -0.05 -1.54 10.05 22.50 0.23 -1.32 15 6 C -0.16 -6.71 6.41 22.89 0.15 -6.56 15 7 S 0.02 1.00 23.19 -56.49 -1.31 -0.31 15 8 C -0.16 -7.94 7.57 67.64 0.51 -7.43 15 9 O -0.45 -21.10 13.37 -85.41 -1.14 -22.24 15 10 C 0.04 2.05 4.70 -20.69 -0.10 1.96 15 11 C -0.47 -27.40 9.33 23.18 0.22 -27.18 15 12 H 0.06 3.79 8.06 -2.91 -0.02 3.77 15 13 C 0.07 3.78 4.48 85.10 0.38 4.17 15 14 N -0.84 -47.48 13.95 21.78 0.30 -47.18 15 15 Si 0.92 44.52 24.39 68.60 1.67 46.19 15 16 H -0.23 -10.41 5.57 99.48 0.55 -9.86 15 17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 15 18 H -0.27 -13.99 7.11 99.48 0.71 -13.28 15 19 C -0.06 -2.70 4.78 -20.22 -0.10 -2.80 15 20 C -0.14 -6.41 6.47 22.81 0.15 -6.26 15 21 H 0.12 1.61 8.14 -2.39 -0.02 1.59 15 22 H 0.07 1.05 7.66 -2.39 -0.02 1.03 15 23 H 0.07 1.06 7.66 -2.39 -0.02 1.04 15 24 H 0.18 3.20 6.29 -2.91 -0.02 3.18 15 25 H 0.16 3.67 8.06 -2.91 -0.02 3.65 15 26 H 0.37 13.79 9.06 -74.06 -0.67 13.12 15 27 H 0.29 14.90 8.31 -92.70 -0.77 14.13 15 28 H 0.11 5.45 5.64 -2.91 -0.02 5.43 15 Total: -1.00 -69.43 253.34 1.84 -67.60 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.39 Total: 12.46 kcal Atomic # 6 Polarization: -47.46 SS G_CDS: 2.90 Total: -44.56 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.30 Total: -47.18 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -2.12 Total: -34.20 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.67 Total: 46.19 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -1.31 Total: -0.31 kcal Total: -69.43 1.84 -67.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396382267.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.819 kcal (2) G-P(sol) polarization free energy of solvation -69.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds